Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002369

Physical Location & Seq

Genomic Coordinates Forward (+)

5782676 .. 5785682

Gene Structure 3007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1815 bp

ATGGAGAATGGCAGTGGAAGCGGCAGTAGTAGCGGTGGTAGAAGTCGTGGTGGAAGTGGCAATGGGGTCAATAAAATTTGCATATGCAGCAAAGAAGATTTCTTGCCGGAGGAGTCATTCAAGAATTGGGGAAACTATGTGCATGCCCTTGCCAGCATCAAAACAAGGCTCAAGGACCGCCTCTTGGCACGGTCATTGGACCGCCATGAGTTAGAAGAAATGCGTGCAAGAAGCGAGAATGAGATGAAGAAAACCCTAAACTGGTGGGATCTCATTTGGTTTGGGATTGGTGCAGTCATGGGGGCAGGCATTTTCGTGCTCACCGGTGAGGCGGCTAGGGATCTTGCAGGCCCTGCAGTTGTAATCTCTTACTTGATATCCGGAGTTTCGGCATTGCTGTCAGTTTTGTGCTACACTGAGTTTGCGGTGGAGCTTCCTGTGGCTGGAGGCTCATTTGCCTATCTTAGAGTGGAACTTGGTGACTTCATGGCCTATATTGCTGCAGGGAACATTCTATTTGAGTATATAGTAGCAGGTGCTAGTGTGGCAAGGTCATGGACCTCCTATTTTGCTACATTGTGCAACCATAGTCCCAATGATTTTCGGATCTATGCCCATTCCCTAGCTGAGAACTATAACCAGTTGGATCCAATTGCGGTCTTTGTCTCCTTTGTGGCTTGTGTTGGTGCTGCCTGGAGCATCAAGGCATCGTCTAGGTTCAATTCGATTACATCCATCATCCATCTGGTGGTTTTGGTATTCATCCTTGTTGCCGGCTTGACAAAGGCTAACACTTCTAATTTCACAACAGACTTTACTCCATTTGGCCTTCATGGCATCTTGAAAGCTTCGGCTGTGCTGTTTTTCGCTTATGTAGGGTTTGATGGTGTGGCAACTTTGGGGGAGGAGACTAAAAACCCTGGTAGAGATATCCCAATAGGGCTCATTGGCTCCATGGTGATTACCATAGTGACTTATTGTGGTCTTGCAGCAACATTGTGTTTGATGCAGCCCTACAGCCAAATTGACCCCGATGCATCATTCAGTGTGGCATTTCAGGCCGCAGGTATGAACTGGGCAAAGTTCATTGTTGCATTGGGAGCACTTAAAGGCATGTCCACGGTTCTACTAGCTAACCTTCTCGGGCAGGCTCGATACTTCACTCACATTGGAAGAACCCACATGGCGCCACCAATCCTTGCAAGGATCAATGCCAAGACCGGTACCCCCGTGACCGCCACGATCATCATGACTGTTGCAAACTCACTTGTTGCTTTCTTCACAAGCCTTGATGTCTTGGCAAACCTTCTCTCCATATCAACCCTGTTTATATTTTCCCTCGTTGCATTAGCACTGATTGTTAGGCGGTACTACGTTACGGGTGAAACATCAGCAACAGATAGAAACAAACTCGTTGGTTTCTTGACATTAATCGTAGGTGCATCGATTGCAGCTGCAGTGTATTGGGTGCTTAGCAACGGTGGTTGGGTTGGTTACGTAGTGACAGTTCCAATATGGTTCTTTGCTACTCTAGGCTTGCAGTTGACCGTCAAACAAGCAAAAAATCCTAAACTTTGGGGGGTGCCACTGGTTCCTTGGTTACCATCGATTAGTATCGCATTCAATATCTTCATCCTCGGATCCATTGATGGAGAATCATTCATAAGATTCAGTATTTGGACATTGGTTTTGCTTGTCTACTATATATTTGTGGCACTACATGCTTCCTATGATGCAGCTAAAGAGACAGAGAGTATAGCTAATGCTGAAACATACATGGAGGCTGGAAGTAACAAAACCCCTGAAGTAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

605

Amino Acids

65.13

Weight (kDa)

7.1

Isoelectric Point (pI)

25.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	86 - 456	1.2e-39	Amino acid permease
AA_permease	PF00324	91 - 488	7.8e-30	Amino acid permease
AA_permease_C	PF13906	526 - 576	8.4e-17	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21120 AT4G21120
fragaria_vesca	FvH4_3g09930 FvH4_3g09940
malus_domestica	MD05G1274600.v1.1 MD05G1274700.v1.1 MD05G1274900.v1.1 MD10G1254300.v1.1
prunus_persica	Prupe.4G089000_v2.0.a1 Prupe.4G089100_v2.0.a1
pyrus_communis	pycom05g25610 pycom05g25630 pycom10g21000
rosa_chinensis	RchiOBHm_Chr5g0015621 RchiOBHm_Chr5g0015661 RchiOBHm_Chr5g0015691 RchiOBHm_Chr5g0015791
rosa_laevigata	RLG00000032214 RLG00000032217 RLG00000032219
rosa_multiflora	Rmu_sc0000843.1_g000004 Rmu_sc0000843.1_g000008 Rmu_sc0003230.1_g000003 Rmu_sc0003230.1_g000005
rosa_roxburghii	Rroxscaffold_1G00060830
rosa_rugosa	Rorug01G0078300 Rorug05G0029000 Rorug05G0029100
rosa_samantha	Rh5AG122300 Rh5AG122400 Rh5AG122600 Rh5BG120900 Rh5BG121200 Rh5BG121700 Rh5CG131300 Rh5CG131900 Rh5CG132800 Rh5DG119900 Rh5DG120600
rosa_wichuraiana	Rw5G010550 Rw5G010560 Rw5G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	524
Acc36I	ACCTGC	2 cut(s)	524, 1055
Acc65I	GGTACC	1 cut(s)	1223
AccB1I	GGYRCC	3 cut(s)	1186, 1223, 1582
AccB7I	CCANNNNNTGG	1 cut(s)	748
AccI	GTMKAC	1 cut(s)	1698
AccIII	TCCGGA	1 cut(s)	380
AclWI	GGATC	8 cut(s)	276, 348, 614, 641, 654, 1214, 1635, 1648
AcsI	RAATTY	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	1187
AfaI	GTAC	2 cut(s)	1225, 1370
AfiI	CCNNNNNNNGG	5 cut(s)	184, 261, 443, 748, 1808
AgeI	ACCGGT	2 cut(s)	323, 1220
AgsI	TTSAA	4 cut(s)	121, 721, 844, 1624
AjnI	CCWGG	2 cut(s)	692, 919
AluBI	AGCT	7 cut(s)	433, 626, 848, 1133, 1454, 1739, 1760
AluI	AGCT	7 cut(s)	433, 626, 848, 1133, 1454, 1739, 1760
Alw21I	GWGCWC	2 cut(s)	321, 1105
Alw26I	GTCTC	3 cut(s)	670, 902, 1739
AlwI	GGATC	8 cut(s)	276, 348, 614, 641, 654, 1214, 1635, 1648
AlwNI	CAGNNNCTG	1 cut(s)	353
Ama87I	CYCGRG	1 cut(s)	1142
Aor13HI	TCCGGA	1 cut(s)	380
AoxI	GGCC	4 cut(s)	349, 489, 826, 1059
ApeKI	GCWGC	8 cut(s)	87, 500, 689, 989, 1009, 1451, 1454, 1736
ApoI	RAATTY	1 cut(s)	75
ArsI	GACNNNNNNTTYG	2 cut(s)	1672, 1704
AseI	ATTAAT	1 cut(s)	1430
AsiGI	ACCGGT	2 cut(s)	323, 1220
Asp718I	GGTACC	1 cut(s)	1223
AspLEI	GCGC	1 cut(s)	1189
AspS9I	GGNCC	4 cut(s)	175, 199, 350, 558
AsuHPI	GGTGA	5 cut(s)	313, 338, 491, 970, 1394
AvaI	CYCGRG	1 cut(s)	1142
AvaII	GGWCC	3 cut(s)	175, 199, 558
BaeI	ACNNNNGTAYC	2 cut(s)	1215, 1248
BamHI	GGATCC	2 cut(s)	646, 1640
BanI	GGYRCC	3 cut(s)	1186, 1223, 1582
BanII	GRGCYC	1 cut(s)	945
Bbv12I	GWGCWC	2 cut(s)	321, 1105
BbvI	GCAGC	8 cut(s)	99, 487, 676, 1001, 1021, 1441, 1463, 1748
BccI	CCATC	5 cut(s)	743, 750, 878, 1612, 1643
BciT130I	CCWGG	2 cut(s)	694, 921
BcoDI	GTCTC	3 cut(s)	670, 902, 1739
BfaI	CTAG	6 cut(s)	336, 540, 623, 714, 1130, 1532
BfmI	CTRYAG	4 cut(s)	354, 501, 1015, 1455
BfoI	RGCGCY	1 cut(s)	1190
BfuAI	ACCTGC	2 cut(s)	524, 1055
BglI	GCCNNNNNGGC	1 cut(s)	834
BlpI	GCTNAGC	1 cut(s)	1472
Bme1390I	CCNGG	2 cut(s)	694, 921
Bme18I	GGWCC	3 cut(s)	175, 199, 558
BmeT110I	CYCGRG	1 cut(s)	1142
BmgT120I	GGNCC	4 cut(s)	175, 199, 350, 558
BmiI	GGNNCC	7 cut(s)	648, 952, 1188, 1225, 1584, 1593, 1642
BmrFI	CCNGG	2 cut(s)	694, 921
BmrI	ACTGGG	1 cut(s)	1084
BmsI	GCATC	9 cut(s)	165, 708, 716, 846, 996, 1024, 1046, 1451, 1723
BmuI	ACTGGG	1 cut(s)	1084
BpmI	CTGGAG	2 cut(s)	465, 715
Bpu1102I	GCTNAGC	1 cut(s)	1472
BpuEI	CTTGAG	1 cut(s)	155
Bsa29I	ATCGAT	2 cut(s)	1445, 1607
BsaAI	YACGTR	1 cut(s)	1498
BsaBI	GATNNNNATC	1 cut(s)	1613
BsaHI	GRCGYC	1 cut(s)	1187
BsaJI	CCNNGG	5 cut(s)	919, 954, 1119, 1595, 1636
BsaWI	WCCGGW	3 cut(s)	323, 380, 1220
BsaXI	ACNNNNNCTCC	2 cut(s)	1295, 1325
Bsc4I	CCNNNNNNNGG	5 cut(s)	184, 261, 443, 748, 1808
Bse118I	RCCGGY	3 cut(s)	323, 773, 1220
Bse1I	ACTGG	4 cut(s)	266, 640, 1079, 1593
Bse3DI	GCAATG	2 cut(s)	67, 392
Bse8I	GATNNNNATC	1 cut(s)	1613
BseAI	TCCGGA	1 cut(s)	380
BseBI	CCWGG	2 cut(s)	694, 921
BseCI	ATCGAT	2 cut(s)	1445, 1607
BseDI	CCNNGG	5 cut(s)	919, 954, 1119, 1595, 1636
BseGI	GGATG	4 cut(s)	731, 738, 762, 1632
BseJI	GATNNNNATC	1 cut(s)	1613
BseLI	CCNNNNNNNGG	5 cut(s)	184, 261, 443, 748, 1808
BseMI	GCAATG	2 cut(s)	67, 392
BseMII	CTCAG	2 cut(s)	408, 618
BseNI	ACTGG	4 cut(s)	266, 640, 1079, 1593
BseRI	GAGGAG	2 cut(s)	125, 920
BseXI	GCAGC	8 cut(s)	99, 487, 676, 1001, 1021, 1441, 1463, 1748
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	4 cut(s)	351, 491, 828, 1061
BshNI	GGYRCC	3 cut(s)	1186, 1223, 1582
BshTI	ACCGGT	2 cut(s)	323, 1220
BshVI	ATCGAT	2 cut(s)	1445, 1607
BsiHKAI	GWGCWC	2 cut(s)	321, 1105
BsiHKCI	CYCGRG	1 cut(s)	1142
BsiSI	CCGG	5 cut(s)	107, 324, 381, 774, 1221
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	5 cut(s)	184, 261, 443, 748, 1808
BsmAI	GTCTC	3 cut(s)	670, 902, 1739
BsmFI	GGGAC	1 cut(s)	576
BsmI	GAATGC	1 cut(s)	1619
BsnI	GGCC	4 cut(s)	351, 491, 828, 1061
BsoBI	CYCGRG	1 cut(s)	1142
Bsp1286I	GDGCHC	3 cut(s)	321, 945, 1105
Bsp13I	TCCGGA	1 cut(s)	380
Bsp143I	GATC	7 cut(s)	268, 340, 606, 646, 1206, 1242, 1640
Bsp1720I	GCTNAGC	1 cut(s)	1472
Bsp19I	CCATGG	1 cut(s)	954
BspANI	GGCC	4 cut(s)	351, 491, 828, 1061
BspCNI	CTCAG	2 cut(s)	409, 619
BspDI	ATCGAT	2 cut(s)	1445, 1607
BspEI	TCCGGA	1 cut(s)	380
BspHI	TCATGA	1 cut(s)	1248
BspLI	GGNNCC	7 cut(s)	648, 952, 1188, 1225, 1584, 1593, 1642
BspMAI	CTGCAG	3 cut(s)	358, 505, 1459
BspMI	ACCTGC	2 cut(s)	524, 1055
BspPI	GGATC	8 cut(s)	276, 348, 614, 641, 654, 1214, 1635, 1648
BspT107I	GGYRCC	3 cut(s)	1186, 1223, 1582
BsrDI	GCAATG	2 cut(s)	67, 392
BsrFI	RCCGGY	3 cut(s)	323, 773, 1220
BsrI	ACTGG	4 cut(s)	266, 640, 1079, 1593
BssAI	RCCGGY	3 cut(s)	323, 773, 1220
BssECI	CCNNGG	5 cut(s)	919, 954, 1119, 1595, 1636
BssMI	GATC	7 cut(s)	268, 340, 606, 646, 1206, 1242, 1640
BssNI	GRCGYC	1 cut(s)	1187
BssT1I	CCWWGG	2 cut(s)	954, 1595
Bst2UI	CCWGG	2 cut(s)	694, 921
Bst4CI	ACNGT	6 cut(s)	192, 1123, 1255, 1481, 1507, 1549
BstACI	GRCGYC	1 cut(s)	1187
BstAPI	GCANNNNNTGC	3 cut(s)	353, 1448, 1721
BstBAI	YACGTR	1 cut(s)	1498
BstC8I	GCNNGC	8 cut(s)	144, 154, 225, 307, 349, 775, 1149, 1538
BstDEI	CTNAG	4 cut(s)	417, 464, 627, 1472
BstDSI	CCRYGG	2 cut(s)	954, 1119
BstEII	GGTNACC	1 cut(s)	1599
BstENI	CCTNNNNNAGG	1 cut(s)	1806
BstF5I	GGATG	4 cut(s)	731, 738, 762, 1632
BstH2I	RGCGCY	1 cut(s)	1190
BstHHI	GCGC	1 cut(s)	1189
BstKTI	GATC	7 cut(s)	271, 343, 609, 649, 1209, 1245, 1643
BstMAI	GTCTC	3 cut(s)	670, 902, 1739
BstMBI	GATC	7 cut(s)	268, 340, 606, 646, 1206, 1242, 1640
BstNI	CCWGG	2 cut(s)	694, 921
BstNSI	RCATGY	3 cut(s)	146, 1117, 1724
BstPI	GGTNACC	1 cut(s)	1599
BstSCI	CCNGG	2 cut(s)	692, 919
BstSFI	CTRYAG	4 cut(s)	354, 501, 1015, 1455
BstSNI	TACGTA	1 cut(s)	1498
BstV1I	GCAGC	8 cut(s)	99, 487, 676, 1001, 1021, 1441, 1463, 1748
BstX2I	RGATCY	5 cut(s)	268, 340, 606, 646, 1640
BstYI	RGATCY	5 cut(s)	268, 340, 606, 646, 1640
Bsu15I	ATCGAT	2 cut(s)	1445, 1607
BsuRI	GGCC	4 cut(s)	351, 491, 828, 1061
BsuTUI	ATCGAT	2 cut(s)	1445, 1607
BtgI	CCRYGG	2 cut(s)	954, 1119
BtsCI	GGATG	4 cut(s)	731, 738, 762, 1632
BtsI	GCAGTG	2 cut(s)	19, 1464
BtsIMutI	CAGTG	6 cut(s)	19, 414, 1051, 1352, 1464, 1586
BveI	ACCTGC	2 cut(s)	524, 1055
Cac8I	GCNNGC	8 cut(s)	144, 154, 225, 307, 349, 775, 1149, 1538
CaiI	CAGNNNCTG	1 cut(s)	353
CciI	TCATGA	1 cut(s)	1248
CfoI	GCGC	1 cut(s)	1189
Cfr10I	RCCGGY	3 cut(s)	323, 773, 1220
Cfr13I	GGNCC	4 cut(s)	175, 199, 350, 558
ClaI	ATCGAT	2 cut(s)	1445, 1607
Csp6I	GTAC	2 cut(s)	1224, 1369
CspAI	ACCGGT	2 cut(s)	323, 1220
CviQI	GTAC	2 cut(s)	1224, 1369
DdeI	CTNAG	4 cut(s)	417, 464, 627, 1472
DinI	GGCGCC	1 cut(s)	1188
DpnI	GATC	7 cut(s)	270, 342, 608, 648, 1208, 1244, 1642
DpnII	GATC	7 cut(s)	268, 340, 606, 646, 1206, 1242, 1640
Eco105I	TACGTA	1 cut(s)	1498
Eco130I	CCWWGG	2 cut(s)	954, 1595
Eco24I	GRGCYC	1 cut(s)	945
Eco32I	GATATC	2 cut(s)	378, 931
Eco47I	GGWCC	3 cut(s)	175, 199, 558
Eco88I	CYCGRG	1 cut(s)	1142
Eco91I	GGTNACC	1 cut(s)	1599
EcoNI	CCTNNNNNAGG	1 cut(s)	1806
EcoO109I	RGGNCCY	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	1599
EcoRII	CCWGG	2 cut(s)	692, 919
EcoRV	GATATC	2 cut(s)	378, 931
EcoT14I	CCWWGG	2 cut(s)	954, 1595
EcoT22I	ATGCAT	1 cut(s)	1039
EcoT38I	GRGCYC	1 cut(s)	945
EgeI	GGCGCC	1 cut(s)	1188
EheI	GGCGCC	1 cut(s)	1188
ErhI	CCWWGG	2 cut(s)	954, 1595
FaqI	GGGAC	1 cut(s)	576
FauNDI	CATATG	1 cut(s)	83
FblI	GTMKAC	1 cut(s)	1698
FokI	GGATG	4 cut(s)	718, 725, 749, 1619
FriOI	GRGCYC	1 cut(s)	945
FspBI	CTAG	6 cut(s)	336, 540, 623, 714, 1130, 1532
GlaI	GCGC	1 cut(s)	1188
GsuI	CTGGAG	2 cut(s)	465, 715
HaeII	RGCGCY	1 cut(s)	1190
HaeIII	GGCC	4 cut(s)	351, 491, 828, 1061
HapII	CCGG	5 cut(s)	107, 324, 381, 774, 1221
HhaI	GCGC	1 cut(s)	1189
Hin1I	GRCGYC	1 cut(s)	1187
Hin6I	GCGC	1 cut(s)	1187
HinP1I	GCGC	1 cut(s)	1187
HincII	GTYRAC	1 cut(s)	1545
HindII	GTYRAC	1 cut(s)	1545
HindIII	AAGCTT	1 cut(s)	846
HinfI	GANTC	3 cut(s)	113, 1655, 1668
HpaII	CCGG	5 cut(s)	107, 324, 381, 774, 1221
HphI	GGTGA	5 cut(s)	313, 338, 491, 970, 1394
Hpy166II	GTNNAC	3 cut(s)	1119, 1545, 1699
Hpy188I	TCNGA	2 cut(s)	606, 1640
Hpy188III	TCNNGA	5 cut(s)	121, 381, 841, 1249, 1423
Hpy8I	GTNNAC	3 cut(s)	1119, 1545, 1699
HpyAV	CCTTC	3 cut(s)	839, 1148, 1316
HpyCH4III	ACNGT	6 cut(s)	192, 1123, 1255, 1481, 1507, 1549
HpyCH4IV	ACGT	2 cut(s)	1374, 1497
HpyF3I	CTNAG	4 cut(s)	417, 464, 627, 1472
HpySE526I	ACGT	2 cut(s)	1374, 1497
Hsp92I	GRCGYC	1 cut(s)	1187
HspAI	GCGC	1 cut(s)	1187
KasI	GGCGCC	1 cut(s)	1186
Kpn2I	TCCGGA	1 cut(s)	380
KpnI	GGTACC	1 cut(s)	1227
KroI	GCCGGC	1 cut(s)	773
KroNI	GCCGGC	1 cut(s)	775
Kzo9I	GATC	7 cut(s)	268, 340, 606, 646, 1206, 1242, 1640
LmnI	GCTCC	4 cut(s)	430, 696, 956, 1100
Lsp1109I	GCAGC	8 cut(s)	99, 487, 676, 1001, 1021, 1441, 1463, 1748
LweI	GCATC	9 cut(s)	165, 708, 716, 846, 996, 1024, 1046, 1451, 1723
MaeI	CTAG	6 cut(s)	336, 540, 623, 714, 1130, 1532
MaeII	ACGT	2 cut(s)	1374, 1497
MaeIII	GTNAC	8 cut(s)	479, 970, 1231, 1375, 1493, 1501, 1599, 1790
MalI	GATC	7 cut(s)	270, 342, 608, 648, 1208, 1244, 1642
MboI	GATC	7 cut(s)	268, 340, 606, 646, 1206, 1242, 1640
MboII	GAAGA	6 cut(s)	107, 227, 259, 1185, 1270, 1621
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	5 cut(s)	268, 340, 606, 646, 1640
MhlI	GDGCHC	3 cut(s)	321, 945, 1105
MluCI	AATT	6 cut(s)	75, 124, 651, 721, 799, 1023
Mly113I	GGCGCC	1 cut(s)	1187
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	9 cut(s)	103, 191, 322, 440, 571, 898, 1349, 1646, 1774
Mph1103I	ATGCAT	1 cut(s)	1039
MroI	TCCGGA	1 cut(s)	380
MroNI	GCCGGC	1 cut(s)	773
MseI	TTAA	2 cut(s)	1107, 1430
MslI	CAYNNNNRTG	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	1454
MspI	CCGG	5 cut(s)	107, 324, 381, 774, 1221
MspR9I	CCNGG	2 cut(s)	694, 921
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	1619
MvaI	CCWGG	2 cut(s)	694, 921
NaeI	GCCGGC	1 cut(s)	775
NarI	GGCGCC	1 cut(s)	1187
NcoI	CCATGG	1 cut(s)	954
NdeI	CATATG	1 cut(s)	83
NdeII	GATC	7 cut(s)	268, 340, 606, 646, 1206, 1242, 1640
NgoMIV	GCCGGC	1 cut(s)	773
NlaIV	GGNNCC	7 cut(s)	648, 952, 1188, 1225, 1584, 1593, 1642
NmuCI	GTSAC	4 cut(s)	479, 970, 1231, 1501
NsiI	ATGCAT	1 cut(s)	1039
NspI	RCATGY	3 cut(s)	146, 1117, 1724
PaeI	GCATGC	1 cut(s)	146
PagI	TCATGA	1 cut(s)	1248
PaqCI	CACCTGC	1 cut(s)	524
PctI	GAATGC	1 cut(s)	1619
PdiI	GCCGGC	1 cut(s)	775
PfeI	GAWTC	2 cut(s)	1655, 1668
PflMI	CCANNNNNTGG	1 cut(s)	748
PinAI	ACCGGT	2 cut(s)	323, 1220
PleI	GAGTC	1 cut(s)	121
PluTI	GGCGCC	1 cut(s)	1190
PpsI	GAGTC	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	1498
PshBI	ATTAAT	1 cut(s)	1430
Psp6I	CCWGG	2 cut(s)	692, 919
PspEI	GGTNACC	1 cut(s)	1599
PspGI	CCWGG	2 cut(s)	692, 919
PspN4I	GGNNCC	7 cut(s)	648, 952, 1188, 1225, 1584, 1593, 1642
PspPI	GGNCC	4 cut(s)	175, 199, 350, 558
PsrI	GAACNNNNNNTAC	2 cut(s)	1491, 1523
PstI	CTGCAG	3 cut(s)	358, 505, 1459
PstNI	CAGNNNCTG	1 cut(s)	353
PsuI	RGATCY	5 cut(s)	268, 340, 606, 646, 1640
PvuII	CAGCTG	1 cut(s)	1454
RsaI	GTAC	2 cut(s)	1225, 1370
RsaNI	GTAC	2 cut(s)	1224, 1369
RseI	CAYNNNNRTG	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	1107, 1430
Sau3AI	GATC	7 cut(s)	268, 340, 606, 646, 1206, 1242, 1640
Sau96I	GGNCC	4 cut(s)	175, 199, 350, 558
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	694, 921
SduI	GDGCHC	3 cut(s)	321, 945, 1105
SfaNI	GCATC	9 cut(s)	165, 708, 716, 846, 996, 1024, 1046, 1451, 1723
SfcI	CTRYAG	4 cut(s)	354, 501, 1015, 1455
SfoI	GGCGCC	1 cut(s)	1188
SgrAI	CRCCGGYG	1 cut(s)	323
SinI	GGWCC	3 cut(s)	175, 199, 558
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SnaBI	TACGTA	1 cut(s)	1498
SphI	GCATGC	1 cut(s)	146
Sse9I	AATT	6 cut(s)	75, 124, 651, 721, 799, 1023
SspDI	GGCGCC	1 cut(s)	1186
SspMI	CTAG	6 cut(s)	336, 540, 623, 714, 1130, 1532
StyD4I	CCNGG	2 cut(s)	692, 919
StyI	CCWWGG	2 cut(s)	954, 1595
TaaI	ACNGT	6 cut(s)	192, 1123, 1255, 1481, 1507, 1549
TaiI	ACGT	2 cut(s)	1377, 1500
TaqI	TCGA	4 cut(s)	725, 1153, 1445, 1607
TasI	AATT	6 cut(s)	75, 124, 651, 721, 799, 1023
TauI	GCSGC	3 cut(s)	24, 335, 1064
TfiI	GAWTC	2 cut(s)	1655, 1668
Tru1I	TTAA	2 cut(s)	1107, 1430
Tru9I	TTAA	2 cut(s)	1107, 1430
TscAI	CASTG	6 cut(s)	19, 421, 1051, 1359, 1464, 1593
TseFI	GTSAC	4 cut(s)	479, 970, 1231, 1501
TseI	GCWGC	8 cut(s)	87, 500, 689, 989, 1009, 1451, 1454, 1736
Tsp45I	GTSAC	4 cut(s)	479, 970, 1231, 1501
TspDTI	ATGAA	8 cut(s)	260, 475, 751, 821, 1075, 1085, 1621, 1651
TspRI	CASTG	6 cut(s)	19, 421, 1051, 1359, 1464, 1593
Van91I	CCANNNNNTGG	1 cut(s)	748
VpaK11BI	GGWCC	3 cut(s)	175, 199, 558
VspI	ATTAAT	1 cut(s)	1430
XagI	CCTNNNNNAGG	1 cut(s)	1806
XapI	RAATTY	1 cut(s)	75
XceI	RCATGY	3 cut(s)	146, 1117, 1724
XcmI	CCANNNNNNNNNTGG	2 cut(s)	742, 1593
XmiI	GTMKAC	1 cut(s)	1698
XspI	CTAG	6 cut(s)	336, 540, 623, 714, 1130, 1532
Zsp2I	ATGCAT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.