Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002369

Physical Location & Seq

Genomic Coordinates Forward (+)

11462437 .. 11463753

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG121200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGCCTATATTGCTGCAGGGAACATCCTATTTGAAGATATAGTAGCTGGTGCTAGTGTGGCAAGGTCATGGACCTCGTATTTTGCTACATTGTGCAACCATAGTCCCAATGATTTTCGGATCATTGTGTCTTCCCTAGCTGAGGACTATAACAAGTTAGATCCAATTGCAGTTTTTGTCTCCATTATGGCTTGTGTTGGTGCGTCCTGGAGCATCAAGGCATTGTCTAGGTTCAATTCGATTACATCCATAATCTTGTTATTCATCCTCGTTGCCGGCTTAACAAAGGCTAACCCTGCTAATTTCACAACAAGCTTTACTCCATTTGGTATTAATGGCATCTTGAAAGCTTCGGCTGTGCTGTTTTTTGCTTATGTAGGGTTTGATGGTGTGGCAACTTTGGGGGAGGAGACTAAAAACCCCGGTAGAGATATCCCAATAGGGCTAATTGGCTCAATGGTGATTACCATTGTAACTTATTCTGCTCTTACAGCGACATTATGTATGATGCAACCCTACAGCCCAATTGACGCAGATGCATCCTTCACTGTGGCATTTCAGGCCGCAGGTATGAACTGGGCAAAGTACATTGTTGCATTGGGAGCACTTAAAGGCATGTCCACGGTTCTACTAGCCAACCTCATCGGGCAGGCTCGATACTTCACTCACATCGGAAGAACCCACATGGCGCCACCTATCCTTGCAAGGATCAATGCCAAAACCGGTACCCCGGTGCCTGCCACGATTATCATGACTGTTGCAAACTCACTTGTTGCTTTCTTCACAAGCCTTGATGTCTTGGCAAACCTTCTCTCCATATCAACCCTGTTTATATTTTCCCTTGTTGCATTAGCATTGATTGTAAGGCGGTACTACGTTACGGGTGAAACATCAGCAACAGACAAAAACAAACTCATTGGTTTCTTGACACTAATCATAGGTGCATCAATTGCATCTGCTGGGTATTGTGTACTTAGCAACGGTGGCTGGATTGGTTACGTAGTGACAGTTCCAATATGGTTCTGTGCTACTCTAGGCTTGCAGTTGACCGTCAAACTAGCAAAGAAACCTAGACTTTGGGGGGTGCCATTGGTTCCTTGGTTGTCATCGGCTAGTATCGCAGTCAACATCTTCATCCTGGGATCCATTGATGGAGCTTCATACCTAAGATTCGGTATTTGGACATTGGTTTTGCTAGTCTACTATATATTTGTGGCACTACATGCTTCATATGATGCAGCTCAGGAGGCAGAGAGTATAGCTAATGCTGAAACAAACATGGAGGCTAGAACTAGCAAAACCGCTAAAGCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

438

Amino Acids

46.72

Weight (kDa)

8.96

Isoelectric Point (pI)

25.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	15 - 296	1.1e-19	Amino acid permease
AA_permease	PF00324	58 - 315	1e-16	Amino acid permease
AA_permease_C	PF13906	360 - 410	1e-14	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21120 AT4G21120
fragaria_vesca	FvH4_3g09930 FvH4_3g09940
malus_domestica	MD05G1274600.v1.1 MD05G1274700.v1.1 MD05G1274900.v1.1 MD10G1254300.v1.1
prunus_persica	Prupe.4G089000_v2.0.a1 Prupe.4G089100_v2.0.a1
pyrus_communis	pycom05g25610 pycom05g25630 pycom10g21000
rosa_chinensis	RchiOBHm_Chr5g0015621 RchiOBHm_Chr5g0015661 RchiOBHm_Chr5g0015691 RchiOBHm_Chr5g0015791
rosa_laevigata	RLG00000032214 RLG00000032217 RLG00000032219
rosa_multiflora	Rmu_sc0000843.1_g000004 Rmu_sc0000843.1_g000008 Rmu_sc0003230.1_g000003 Rmu_sc0003230.1_g000005
rosa_roxburghii	Rroxscaffold_1G00060830
rosa_rugosa	Rorug01G0078300 Rorug05G0029000 Rorug05G0029100
rosa_samantha	Rh5AG122300 Rh5AG122400 Rh5AG122600 Rh5BG120900 Rh5BG121200 Rh5BG121700 Rh5CG131300 Rh5CG131900 Rh5CG132800 Rh5DG119900 Rh5DG120600
rosa_wichuraiana	Rw5G010550 Rw5G010560 Rw5G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	557, 1301
Acc65I	GGTACC	1 cut(s)	725
AccB1I	GGYRCC	4 cut(s)	688, 725, 733, 1084
AccI	GTMKAC	1 cut(s)	1200
AciI	CCGC	3 cut(s)	564, 868, 1302
AclWI	GGATC	5 cut(s)	128, 155, 716, 1137, 1150
AcyI	GRCGYC	1 cut(s)	689
AfaI	GTAC	4 cut(s)	587, 727, 872, 972
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgeI	ACCGGT	1 cut(s)	722
AgsI	TTSAA	3 cut(s)	35, 235, 346
AjnI	CCWGG	2 cut(s)	206, 1137
AluBI	AGCT	7 cut(s)	47, 140, 315, 350, 1157, 1241, 1262
AluI	AGCT	7 cut(s)	47, 140, 315, 350, 1157, 1241, 1262
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	2 cut(s)	184, 404
AlwI	GGATC	5 cut(s)	128, 155, 716, 1137, 1150
AoxI	GGCC	2 cut(s)	3, 561
ApeKI	GCWGC	2 cut(s)	14, 1238
ArsI	GACNNNNNNTTYG	2 cut(s)	1174, 1206
AseI	ATTAAT	1 cut(s)	333
AsiGI	ACCGGT	1 cut(s)	722
Asp718I	GGTACC	1 cut(s)	725
AspLEI	GCGC	1 cut(s)	691
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	2 cut(s)	423, 731
AsuHPI	GGTGA	2 cut(s)	472, 896
AvaII	GGWCC	1 cut(s)	72
BaeI	ACNNNNGTAYC	2 cut(s)	717, 750
BamHI	GGATCC	1 cut(s)	1142
BanI	GGYRCC	4 cut(s)	688, 725, 733, 1084
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	607
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	1250
BccI	CCATC	2 cut(s)	380, 1145
BciT130I	CCWGG	2 cut(s)	208, 1139
BcnI	CCSGG	2 cut(s)	423, 731
BcoDI	GTCTC	2 cut(s)	184, 404
BfmI	CTRYAG	2 cut(s)	15, 517
BfoI	RGCGCY	1 cut(s)	692
BfuAI	ACCTGC	2 cut(s)	557, 1301
BisI	GCNGC	3 cut(s)	15, 564, 1239
BlsI	GCNGC	3 cut(s)	16, 565, 1240
Bme1390I	CCNGG	4 cut(s)	208, 423, 731, 1139
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	6 cut(s)	690, 727, 735, 1086, 1095, 1144
BmrFI	CCNGG	4 cut(s)	208, 423, 731, 1139
BmrI	ACTGGG	1 cut(s)	586
BmsI	GCATC	8 cut(s)	222, 348, 498, 526, 548, 953, 962, 1225
BmuI	ACTGGG	1 cut(s)	586
BpiI	GAAGAC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	229
Bpu10I	CCTNAGC	2 cut(s)	141, 1242
BpuMI	CCSGG	2 cut(s)	423, 731
BsaAI	YACGTR	1 cut(s)	1000
BsaHI	GRCGYC	1 cut(s)	689
BsaJI	CCNNGG	5 cut(s)	421, 621, 729, 1097, 1138
BsaWI	WCCGGW	1 cut(s)	722
BsaXI	ACNNNNNCTCC	2 cut(s)	797, 827
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse118I	RCCGGY	2 cut(s)	275, 722
Bse1I	ACTGG	1 cut(s)	581
BseBI	CCWGG	2 cut(s)	208, 1139
BseDI	CCNNGG	5 cut(s)	421, 621, 729, 1097, 1138
BseGI	GGATG	5 cut(s)	24, 245, 264, 539, 1134
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	2 cut(s)	132, 1256
BseNI	ACTGG	1 cut(s)	581
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	1250
BseYI	CCCAGC	1 cut(s)	959
BshFI	GGCC	2 cut(s)	5, 563
BshNI	GGYRCC	4 cut(s)	688, 725, 733, 1084
BshTI	ACCGGT	1 cut(s)	722
BsiHKAI	GWGCWC	1 cut(s)	607
BsiSI	CCGG	4 cut(s)	276, 423, 723, 731
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	2 cut(s)	184, 404
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	2 cut(s)	5, 563
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	4 cut(s)	120, 160, 708, 1142
BspACI	CCGC	3 cut(s)	564, 868, 1302
BspANI	GGCC	2 cut(s)	5, 563
BspCNI	CTCAG	2 cut(s)	133, 1255
BspHI	TCATGA	1 cut(s)	750
BspLI	GGNNCC	6 cut(s)	690, 727, 735, 1086, 1095, 1144
BspMAI	CTGCAG	1 cut(s)	19
BspMI	ACCTGC	2 cut(s)	557, 1301
BspPI	GGATC	5 cut(s)	128, 155, 716, 1137, 1150
BspT107I	GGYRCC	4 cut(s)	688, 725, 733, 1084
BsrFI	RCCGGY	2 cut(s)	275, 722
BsrI	ACTGG	1 cut(s)	581
BssAI	RCCGGY	2 cut(s)	275, 722
BssECI	CCNNGG	5 cut(s)	421, 621, 729, 1097, 1138
BssMI	GATC	4 cut(s)	120, 160, 708, 1142
BssNI	GRCGYC	1 cut(s)	689
BssT1I	CCWWGG	1 cut(s)	1097
Bst2UI	CCWGG	2 cut(s)	208, 1139
Bst4CI	ACNGT	6 cut(s)	550, 625, 757, 983, 1009, 1051
BstACI	GRCGYC	1 cut(s)	689
BstAPI	GCANNNNNTGC	2 cut(s)	950, 1223
BstBAI	YACGTR	1 cut(s)	1000
BstC8I	GCNNGC	4 cut(s)	277, 651, 738, 1040
BstDEI	CTNAG	4 cut(s)	141, 974, 1166, 1242
BstDSI	CCRYGG	1 cut(s)	621
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	5 cut(s)	24, 245, 264, 539, 1134
BstH2I	RGCGCY	1 cut(s)	692
BstHHI	GCGC	1 cut(s)	691
BstKTI	GATC	4 cut(s)	123, 163, 711, 1145
BstMAI	GTCTC	2 cut(s)	184, 404
BstMBI	GATC	4 cut(s)	120, 160, 708, 1142
BstNI	CCWGG	2 cut(s)	208, 1139
BstNSI	RCATGY	2 cut(s)	619, 1226
BstSCI	CCNGG	4 cut(s)	206, 421, 729, 1137
BstSFI	CTRYAG	2 cut(s)	15, 517
BstSNI	TACGTA	1 cut(s)	1000
BstV1I	GCAGC	1 cut(s)	1250
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	2 cut(s)	160, 1142
BstYI	RGATCY	2 cut(s)	160, 1142
BsuRI	GGCC	2 cut(s)	5, 563
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	5 cut(s)	24, 245, 264, 539, 1134
BtsIMutI	CAGTG	1 cut(s)	546
BveI	ACCTGC	2 cut(s)	557, 1301
Cac8I	GCNNGC	4 cut(s)	277, 651, 738, 1040
CciI	TCATGA	1 cut(s)	750
CfoI	GCGC	1 cut(s)	691
Cfr10I	RCCGGY	2 cut(s)	275, 722
Cfr13I	GGNCC	1 cut(s)	72
CseI	GACGC	2 cut(s)	192, 539
Csp6I	GTAC	4 cut(s)	586, 726, 871, 971
CspAI	ACCGGT	1 cut(s)	722
CviAII	CATG	6 cut(s)	69, 616, 685, 751, 1223, 1279
CviQI	GTAC	4 cut(s)	586, 726, 871, 971
DdeI	CTNAG	4 cut(s)	141, 974, 1166, 1242
DinI	GGCGCC	1 cut(s)	690
DpnI	GATC	4 cut(s)	122, 162, 710, 1144
DpnII	GATC	4 cut(s)	120, 160, 708, 1142
Eco105I	TACGTA	1 cut(s)	1000
Eco130I	CCWWGG	1 cut(s)	1097
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	206, 1137
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	1097
EcoT22I	ATGCAT	1 cut(s)	541
EgeI	GGCGCC	1 cut(s)	690
EheI	GGCGCC	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	1097
FaeI	CATG	6 cut(s)	72, 619, 688, 754, 1226, 1282
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	6 cut(s)	68, 615, 684, 750, 1222, 1278
FauNDI	CATATG	1 cut(s)	1231
FblI	GTMKAC	1 cut(s)	1200
Fnu4HI	GCNGC	3 cut(s)	15, 564, 1239
FokI	GGATG	5 cut(s)	11, 232, 251, 526, 1121
Fsp4HI	GCNGC	3 cut(s)	15, 564, 1239
GlaI	GCGC	1 cut(s)	690
GluI	GCNGC	3 cut(s)	15, 564, 1239
GsaI	CCCAGC	1 cut(s)	963
GsuI	CTGGAG	1 cut(s)	229
HaeII	RGCGCY	1 cut(s)	692
HaeIII	GGCC	2 cut(s)	5, 563
HapII	CCGG	4 cut(s)	276, 423, 723, 731
HgaI	GACGC	2 cut(s)	192, 539
HhaI	GCGC	1 cut(s)	691
Hin1I	GRCGYC	1 cut(s)	689
Hin1II	CATG	6 cut(s)	72, 619, 688, 754, 1226, 1282
Hin6I	GCGC	1 cut(s)	689
HinP1I	GCGC	1 cut(s)	689
HincII	GTYRAC	2 cut(s)	1047, 1126
HindII	GTYRAC	2 cut(s)	1047, 1126
HindIII	AAGCTT	2 cut(s)	313, 348
HinfI	GANTC	1 cut(s)	1170
HpaII	CCGG	4 cut(s)	276, 423, 723, 731
HphI	GGTGA	2 cut(s)	472, 896
Hpy166II	GTNNAC	5 cut(s)	621, 971, 1047, 1126, 1201
Hpy188I	TCNGA	2 cut(s)	120, 674
Hpy188III	TCNNGA	4 cut(s)	343, 751, 925, 1244
Hpy8I	GTNNAC	5 cut(s)	621, 971, 1047, 1126, 1201
HpyAV	CCTTC	2 cut(s)	553, 818
HpyCH4III	ACNGT	6 cut(s)	550, 625, 757, 983, 1009, 1051
HpyCH4IV	ACGT	2 cut(s)	876, 999
HpyF3I	CTNAG	4 cut(s)	141, 974, 1166, 1242
HpySE526I	ACGT	2 cut(s)	876, 999
Hsp92I	GRCGYC	1 cut(s)	689
Hsp92II	CATG	6 cut(s)	72, 619, 688, 754, 1226, 1282
HspAI	GCGC	1 cut(s)	689
KasI	GGCGCC	1 cut(s)	688
KpnI	GGTACC	1 cut(s)	729
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	120, 160, 708, 1142
LmnI	GCTCC	3 cut(s)	210, 602, 1154
Lsp1109I	GCAGC	1 cut(s)	1250
LweI	GCATC	8 cut(s)	222, 348, 498, 526, 548, 953, 962, 1225
MaeII	ACGT	2 cut(s)	876, 999
MaeIII	GTNAC	4 cut(s)	472, 877, 995, 1003
MalI	GATC	4 cut(s)	122, 162, 710, 1144
MboI	GATC	4 cut(s)	120, 160, 708, 1142
MboII	GAAGA	5 cut(s)	47, 123, 687, 772, 1123
MfeI	CAATTG	3 cut(s)	165, 525, 948
MflI	RGATCY	2 cut(s)	160, 1142
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	6 cut(s)	165, 235, 301, 447, 525, 948
Mly113I	GGCGCC	1 cut(s)	689
MnlI	CCTC	7 cut(s)	85, 136, 278, 400, 650, 1240, 1276
Mph1103I	ATGCAT	1 cut(s)	541
MroNI	GCCGGC	1 cut(s)	275
MseI	TTAA	3 cut(s)	281, 333, 609
MspI	CCGG	4 cut(s)	276, 423, 723, 731
MspR9I	CCNGG	4 cut(s)	208, 423, 731, 1139
MunI	CAATTG	3 cut(s)	165, 525, 948
MvaI	CCWGG	2 cut(s)	208, 1139
NaeI	GCCGGC	1 cut(s)	277
NarI	GGCGCC	1 cut(s)	689
NciI	CCSGG	2 cut(s)	423, 731
NdeI	CATATG	1 cut(s)	1231
NdeII	GATC	4 cut(s)	120, 160, 708, 1142
NgoMIV	GCCGGC	1 cut(s)	275
NlaIII	CATG	6 cut(s)	72, 619, 688, 754, 1226, 1282
NlaIV	GGNNCC	6 cut(s)	690, 727, 735, 1086, 1095, 1144
NmuCI	GTSAC	1 cut(s)	1003
NsiI	ATGCAT	1 cut(s)	541
NspI	RCATGY	2 cut(s)	619, 1226
PagI	TCATGA	1 cut(s)	750
PdiI	GCCGGC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	1170
PfoI	TCCNGGA	1 cut(s)	206
PinAI	ACCGGT	1 cut(s)	722
PkrI	GCNGC	3 cut(s)	16, 565, 1240
PluTI	GGCGCC	1 cut(s)	692
Ppu21I	YACGTR	1 cut(s)	1000
PshBI	ATTAAT	1 cut(s)	333
Psp6I	CCWGG	2 cut(s)	206, 1137
PspFI	CCCAGC	1 cut(s)	959
PspGI	CCWGG	2 cut(s)	206, 1137
PspN4I	GGNNCC	6 cut(s)	690, 727, 735, 1086, 1095, 1144
PspPI	GGNCC	1 cut(s)	72
PsrI	GAACNNNNNNTAC	2 cut(s)	993, 1025
PstI	CTGCAG	1 cut(s)	19
PsuI	RGATCY	2 cut(s)	160, 1142
RsaI	GTAC	4 cut(s)	587, 727, 872, 972
RsaNI	GTAC	4 cut(s)	586, 726, 871, 971
SaqAI	TTAA	3 cut(s)	281, 333, 609
SatI	GCNGC	3 cut(s)	15, 564, 1239
Sau3AI	GATC	4 cut(s)	120, 160, 708, 1142
Sau96I	GGNCC	1 cut(s)	72
ScrFI	CCNGG	4 cut(s)	208, 423, 731, 1139
SduI	GDGCHC	1 cut(s)	607
SfaNI	GCATC	8 cut(s)	222, 348, 498, 526, 548, 953, 962, 1225
SfcI	CTRYAG	2 cut(s)	15, 517
SfoI	GGCGCC	1 cut(s)	690
SinI	GGWCC	1 cut(s)	72
SnaBI	TACGTA	1 cut(s)	1000
Sse9I	AATT	6 cut(s)	165, 235, 301, 447, 525, 948
SsiI	CCGC	3 cut(s)	564, 868, 1302
SspDI	GGCGCC	1 cut(s)	688
StyD4I	CCNGG	4 cut(s)	206, 421, 729, 1137
StyI	CCWWGG	1 cut(s)	1097
TaaI	ACNGT	6 cut(s)	550, 625, 757, 983, 1009, 1051
TaiI	ACGT	2 cut(s)	879, 1002
TaqI	TCGA	2 cut(s)	239, 655
TasI	AATT	6 cut(s)	165, 235, 301, 447, 525, 948
TatI	WGTACW	2 cut(s)	585, 970
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	1 cut(s)	1170
Tru1I	TTAA	3 cut(s)	281, 333, 609
Tru9I	TTAA	3 cut(s)	281, 333, 609
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	1 cut(s)	1003
TseI	GCWGC	2 cut(s)	14, 1238
Tsp45I	GTSAC	1 cut(s)	1003
TspDTI	ATGAA	5 cut(s)	253, 587, 1123, 1149, 1218
TspRI	CASTG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	72
VspI	ATTAAT	1 cut(s)	333
XagI	CCTNNNNNAGG	1 cut(s)	140
XceI	RCATGY	2 cut(s)	619, 1226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1095
XmiI	GTMKAC	1 cut(s)	1200
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.