Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002369

Physical Location & Seq

Genomic Coordinates Reverse (-)

26958957 .. 26964417

Gene Structure 5461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

ATGAAGAAGACGCTCAGCTGGTGGGACCTCATCTGGTTCGGACTCGGCGCTGTCATCGGCGCGGGAATATTCGTGCTCACGGGACTGGAGGCGAGAGAGCACGCGGGCCCCGCCGTCGTGCTGTCGTACGTCGTCTCGGGCGTCTCCGCCTTGCTCTCTGTTTTCTGTTATACCGAGTTCGCCGTTGAGATTCCTGTTGCAGGTGGCTCATTTGCCTACCTAAGGGTGGAGCTTGGGGACTTCGTAGCGTTCATTGCAGCAGGCAACATCCTCCTCGAGTACGTCATAGGTGGCGCAGCCGTTGCTCGTTCTTGGACATCCTACTTCACCACCCTCTGCAATCGCAGCAACACCAATGATTTCCGCATCATAGCCCACGGTTTCCCGGAGGACTACAAGTACCTCGATCCCATTGCTGTCGCTGTCATTATCGGCATCTGCTGCCTCGCAGTCCTCAGCACAAAGGGTTCTTCTCGTCTCAACTACATTGCCTCGATTGTCCACATCATTGTCATTCTCTTCATCATCATCGCTGGCCTCACCAAAGCAGATATCAATAACTACCGCGATTTCTCCCACTTTGGCCCTCGCGGTGTATTTCAAGCTTCAGCTGTTCTATTCTTTGCGTACGTTGGATTTGATGCTGTTTCAACCATGGCGGAGGAGACCAAGAATCCTGCAAAGGACATCCCAATTGGTCTTGTCGGCTCAATGGTGATTACCACAGTGCTCTATTGCTTGCTTGCAGTGACATTATGCCTTATGCAGCCGTATGGCCAAATCGACAAACAAGCTCCATTTTCGGTTGCGTTTGAAGATGTTGGGATGGGATGGGCCAAGTACGTTGTGGCAGCGGGTGCATTGAAAGGCATGACAAGCGTGCTGCTTGTTGGGGCAGTTGGACAGGCGCGGTACCTCACTCACATTGCCCGAACCCACATGGTGCCGCCATGGTTTGCGCAAGTTGATTTCAAAACCGGCACTCCTGTCAATGCCACGGTCACCATGCTTGCAGCCACCGCAATCATTGCCTTCTTCACGAGCCTTGACATTCTGGCCAACCTTCTCTCCATCTCCACTCTGTTCATCTTCAGCCTTGTTGCCATCGCTCTCCTTGTTCGCCGCTACTATGTCAGCAGCGTCACAACTCAGGCCAACAGAAACAAGTTCGTTGCCTTCCTTTTCATCATAATTAGCTCTTCAATTGCCACCTCTGTCTATTGGAGCAGAACAGATGATTGGACTGCCTACGTGGTAACCGCGCCGCTTTGGTTCTTGGGTACTTTAGGGATTTGGTTACTTGTCCCCCAAGCAAGGAGTCCGAAGCTCTGGGGAGTGCCACTGGTGCCATGGTTGCCATCTCTTTCAATTGCCATCAACATTTTCCTGCTCGGGTCAATCGATCACGCCTCATTCATAAGGTTTGGAGTGTGGACTCTGATCATCTTGGTTTACTACTTCATCTTCGGATTGCACGCGTCTTATGACACGGCAAAGGACTCCGAAGAGAGGAGGCTGGAGGGCGGCACAAACAATGAGTTGAAGAAGGTTCAAGCTGCAAGGGTGGCCACGAGGGACGCCGGCTTAGACGCTGGAAATGGTAGCAATGCCTCTGCACCTCCTGCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

544

Amino Acids

58.84

Weight (kDa)

8.1

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	5 - 399	2.4e-49	Amino acid permease
AA_permease	PF00324	10 - 403	8.6e-33	Amino acid permease
AA_permease_C	PF13906	444 - 494	6.7e-19	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21120 AT4G21120
fragaria_vesca	FvH4_3g09930 FvH4_3g09940
malus_domestica	MD05G1274600.v1.1 MD05G1274700.v1.1 MD05G1274900.v1.1 MD10G1254300.v1.1
prunus_persica	Prupe.4G089000_v2.0.a1 Prupe.4G089100_v2.0.a1
pyrus_communis	pycom05g25610 pycom05g25630 pycom10g21000
rosa_chinensis	RchiOBHm_Chr5g0015621 RchiOBHm_Chr5g0015661 RchiOBHm_Chr5g0015691 RchiOBHm_Chr5g0015791
rosa_laevigata	RLG00000032214 RLG00000032217 RLG00000032219
rosa_multiflora	Rmu_sc0000843.1_g000004 Rmu_sc0000843.1_g000008 Rmu_sc0003230.1_g000003 Rmu_sc0003230.1_g000005
rosa_roxburghii	Rroxscaffold_1G00060830
rosa_rugosa	Rorug01G0078300 Rorug05G0029000 Rorug05G0029100
rosa_samantha	Rh5AG122300 Rh5AG122400 Rh5AG122600 Rh5BG120900 Rh5BG121200 Rh5BG121700 Rh5CG131300 Rh5CG131900 Rh5CG132800 Rh5DG119900 Rh5DG120600
rosa_wichuraiana	Rw5G010550 Rw5G010560 Rw5G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	191
Acc16I	TGCGCA	1 cut(s)	960
Acc36I	ACCTGC	1 cut(s)	191
Acc65I	GGTACC	1 cut(s)	912
AccB1I	GGYRCC	3 cut(s)	912, 943, 1345
AccII	CGCG	7 cut(s)	62, 104, 567, 591, 910, 1262, 1478
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	3 cut(s)	775, 1056, 1566
AcuI	CTGAAG	2 cut(s)	591, 1075
AcyI	GRCGYC	2 cut(s)	141, 1578
AdeI	CACNNNGTG	1 cut(s)	943
AfaI	GTAC	7 cut(s)	128, 281, 401, 629, 842, 914, 1282
AfiI	CCNNNNNNNGG	5 cut(s)	200, 222, 226, 1314, 1509
AflIII	ACRYGT	1 cut(s)	1476
AgsI	TTSAA	9 cut(s)	602, 651, 815, 865, 973, 1203, 1368, 1543, 1553
AjuI	GAANNNNNNNTTGG	2 cut(s)	1222, 1254
AluBI	AGCT	8 cut(s)	18, 232, 605, 611, 794, 1197, 1327, 1556
AluI	AGCT	8 cut(s)	18, 232, 605, 611, 794, 1197, 1327, 1556
Alw21I	GWGCWC	3 cut(s)	78, 102, 732
Alw26I	GTCTC	4 cut(s)	139, 148, 482, 659
AlwI	GGATC	1 cut(s)	401
Ama87I	CYCGRG	3 cut(s)	136, 275, 1391
AoxI	GGCC	8 cut(s)	106, 535, 583, 775, 834, 1056, 1152, 1566
ApaI	GGGCCC	1 cut(s)	110
Asp718I	GGTACC	1 cut(s)	912
AspLEI	GCGC	6 cut(s)	50, 62, 296, 910, 961, 1264
AspS9I	GGNCC	5 cut(s)	25, 106, 107, 584, 834
AsuC2I	CCSGG	1 cut(s)	386
AsuHPI	GGTGA	4 cut(s)	319, 532, 727, 994
AvaI	CYCGRG	3 cut(s)	136, 275, 1391
AvaII	GGWCC	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	110
BalI	TGGCCA	3 cut(s)	777, 1058, 1568
BanI	GGYRCC	3 cut(s)	912, 943, 1345
BanII	GRGCYC	1 cut(s)	110
BauI	CACGAG	2 cut(s)	1039, 1570
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	3 cut(s)	78, 102, 732
BbvCI	CCTCAGC	1 cut(s)	455
BccI	CCATC	6 cut(s)	820, 825, 1079, 1112, 1366, 1382
BceAI	ACGGC	5 cut(s)	98, 167, 284, 754, 1506
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BclI	TGATCA	1 cut(s)	1440
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	4 cut(s)	139, 148, 482, 659
BfaI	CTAG	1 cut(s)	1626
BfoI	RGCGCY	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	191
BlpI	GCTNAGC	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	386
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	3 cut(s)	136, 275, 1391
BmgT120I	GGNCC	5 cut(s)	25, 106, 107, 584, 834
BmiI	GGNNCC	6 cut(s)	26, 108, 109, 914, 945, 1347
BmrFI	CCNGG	1 cut(s)	386
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	2 cut(s)	107, 1538
Bpu10I	CCTNAGC	1 cut(s)	455
Bpu1102I	GCTNAGC	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	386
Bsa29I	ATCGAT	1 cut(s)	1401
BsaAI	YACGTR	1 cut(s)	1252
BsaHI	GRCGYC	2 cut(s)	141, 1578
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	5 cut(s)	376, 654, 950, 996, 1349
BsaXI	ACNNNNNCTCC	4 cut(s)	967, 997, 1052, 1082
Bsc4I	CCNNNNNNNGG	5 cut(s)	200, 222, 226, 1314, 1509
Bse118I	RCCGGY	2 cut(s)	977, 1580
Bse1I	ACTGG	2 cut(s)	90, 1347
Bse21I	CCTNAGG	1 cut(s)	221
Bse3DI	GCAATG	6 cut(s)	252, 411, 486, 924, 1026, 1612
BseCI	ATCGAT	1 cut(s)	1401
BseDI	CCNNGG	5 cut(s)	376, 654, 950, 996, 1349
BseGI	GGATG	5 cut(s)	267, 317, 687, 831, 836
BseLI	CCNNNNNNNGG	5 cut(s)	200, 222, 226, 1314, 1509
BseMI	GCAATG	6 cut(s)	252, 411, 486, 924, 1026, 1612
BseMII	CTCAG	3 cut(s)	28, 469, 1163
BseNI	ACTGG	2 cut(s)	90, 1347
BseRI	GAGGAG	3 cut(s)	263, 677, 1525
BseSI	GKGCMC	1 cut(s)	110
BsgI	GTGCAG	1 cut(s)	1599
Bsh1236I	CGCG	7 cut(s)	62, 104, 567, 591, 910, 1262, 1478
BshFI	GGCC	8 cut(s)	108, 537, 585, 777, 836, 1058, 1154, 1568
BshNI	GGYRCC	3 cut(s)	912, 943, 1345
BshVI	ATCGAT	1 cut(s)	1401
BsiHKAI	GWGCWC	3 cut(s)	78, 102, 732
BsiHKCI	CYCGRG	3 cut(s)	136, 275, 1391
BsiSI	CCGG	3 cut(s)	386, 978, 1581
BsiWI	CGTACG	2 cut(s)	126, 627
BslFI	GGGAC	5 cut(s)	38, 96, 251, 1289, 1589
BslI	CCNNNNNNNGG	5 cut(s)	200, 222, 226, 1314, 1509
BsmAI	GTCTC	4 cut(s)	139, 148, 482, 659
BsmBI	CGTCTC	3 cut(s)	139, 148, 482
BsmFI	GGGAC	5 cut(s)	38, 96, 251, 1289, 1589
BsnI	GGCC	8 cut(s)	108, 537, 585, 777, 836, 1058, 1154, 1568
Bso31I	GGTCTC	1 cut(s)	659
BsoBI	CYCGRG	3 cut(s)	136, 275, 1391
Bsp120I	GGGCCC	1 cut(s)	106
Bsp1286I	GDGCHC	4 cut(s)	78, 102, 110, 732
Bsp143I	GATC	3 cut(s)	406, 1402, 1440
Bsp1720I	GCTNAGC	1 cut(s)	14
Bsp19I	CCATGG	3 cut(s)	654, 950, 1349
BspANI	GGCC	8 cut(s)	108, 537, 585, 777, 836, 1058, 1154, 1568
BspCNI	CTCAG	3 cut(s)	27, 468, 1162
BspDI	ATCGAT	1 cut(s)	1401
BspFNI	CGCG	7 cut(s)	62, 104, 567, 591, 910, 1262, 1478
BspLI	GGNNCC	6 cut(s)	26, 108, 109, 914, 945, 1347
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	401
BspQI	GCTCTTC	1 cut(s)	1204
BspT107I	GGYRCC	3 cut(s)	912, 943, 1345
BspTNI	GGTCTC	1 cut(s)	659
BsrDI	GCAATG	6 cut(s)	252, 411, 486, 924, 1026, 1612
BsrFI	RCCGGY	2 cut(s)	977, 1580
BsrI	ACTGG	2 cut(s)	90, 1347
BssAI	RCCGGY	2 cut(s)	977, 1580
BssECI	CCNNGG	5 cut(s)	376, 654, 950, 996, 1349
BssMI	GATC	3 cut(s)	406, 1402, 1440
BssNI	GRCGYC	2 cut(s)	141, 1578
BssSI	CACGAG	2 cut(s)	1039, 1570
BssT1I	CCWWGG	3 cut(s)	654, 950, 1349
Bst2BI	CACGAG	2 cut(s)	1039, 1570
Bst4CI	ACNGT	3 cut(s)	380, 727, 1000
Bst6I	CTCTTC	3 cut(s)	524, 1204, 1500
BstACI	GRCGYC	2 cut(s)	141, 1578
BstAPI	GCANNNNNTGC	5 cut(s)	302, 441, 857, 1028, 1622
BstBAI	YACGTR	1 cut(s)	1252
BstDEI	CTNAG	5 cut(s)	14, 221, 455, 1149, 1585
BstDSI	CCRYGG	5 cut(s)	376, 654, 950, 996, 1349
BstEII	GGTNACC	2 cut(s)	1000, 1255
BstENI	CCTNNNNNAGG	2 cut(s)	198, 220
BstF5I	GGATG	5 cut(s)	267, 317, 687, 831, 836
BstFNI	CGCG	7 cut(s)	62, 104, 567, 591, 910, 1262, 1478
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	6 cut(s)	50, 62, 296, 910, 961, 1264
BstKTI	GATC	3 cut(s)	409, 1405, 1443
BstMAI	GTCTC	4 cut(s)	139, 148, 482, 659
BstMBI	GATC	3 cut(s)	406, 1402, 1440
BstPI	GGTNACC	2 cut(s)	1000, 1255
BstSCI	CCNGG	1 cut(s)	384
BstSLI	GKGCMC	1 cut(s)	110
BstUI	CGCG	7 cut(s)	62, 104, 567, 591, 910, 1262, 1478
BstV2I	GAAGAC	1 cut(s)	14
Bsu15I	ATCGAT	1 cut(s)	1401
Bsu36I	CCTNAGG	1 cut(s)	221
BsuRI	GGCC	8 cut(s)	108, 537, 585, 777, 836, 1058, 1154, 1568
BsuTUI	ATCGAT	1 cut(s)	1401
BtgI	CCRYGG	5 cut(s)	376, 654, 950, 996, 1349
BtgZI	GCGATG	2 cut(s)	514, 1090
BtsCI	GGATG	5 cut(s)	267, 317, 687, 831, 836
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	3 cut(s)	732, 753, 1340
BveI	ACCTGC	1 cut(s)	191
CfoI	GCGC	6 cut(s)	50, 62, 296, 910, 961, 1264
Cfr10I	RCCGGY	2 cut(s)	977, 1580
Cfr13I	GGNCC	5 cut(s)	25, 106, 107, 584, 834
ClaI	ATCGAT	1 cut(s)	1401
CseI	GACGC	6 cut(s)	19, 130, 1129, 1467, 1586, 1598
Csp6I	GTAC	7 cut(s)	127, 280, 400, 628, 841, 913, 1281
CviAII	CATG	6 cut(s)	655, 871, 940, 951, 1006, 1350
CviQI	GTAC	7 cut(s)	127, 280, 400, 628, 841, 913, 1281
DdeI	CTNAG	5 cut(s)	14, 221, 455, 1149, 1585
DpnI	GATC	3 cut(s)	408, 1404, 1442
DpnII	GATC	3 cut(s)	406, 1402, 1440
DraIII	CACNNNGTG	1 cut(s)	943
EaeI	YGGCCR	3 cut(s)	775, 1056, 1566
Eam1104I	CTCTTC	3 cut(s)	524, 1204, 1500
EarI	CTCTTC	3 cut(s)	524, 1204, 1500
EciI	GGCGGA	2 cut(s)	136, 674
Eco130I	CCWWGG	3 cut(s)	654, 950, 1349
Eco24I	GRGCYC	1 cut(s)	110
Eco31I	GGTCTC	1 cut(s)	659
Eco32I	GATATC	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	25
Eco57I	CTGAAG	2 cut(s)	591, 1075
Eco81I	CCTNAGG	1 cut(s)	221
Eco88I	CYCGRG	3 cut(s)	136, 275, 1391
Eco91I	GGTNACC	2 cut(s)	1000, 1255
EcoNI	CCTNNNNNAGG	2 cut(s)	198, 220
EcoO109I	RGGNCCY	2 cut(s)	25, 107
EcoO65I	GGTNACC	2 cut(s)	1000, 1255
EcoRV	GATATC	1 cut(s)	553
EcoT14I	CCWWGG	3 cut(s)	654, 950, 1349
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	3 cut(s)	654, 950, 1349
Esp3I	CGTCTC	3 cut(s)	139, 148, 482
FaeI	CATG	6 cut(s)	658, 874, 943, 954, 1009, 1353
FaqI	GGGAC	5 cut(s)	38, 96, 251, 1289, 1589
FatI	CATG	6 cut(s)	654, 870, 939, 950, 1005, 1349
FauI	CCCGC	4 cut(s)	55, 97, 118, 847
FbaI	TGATCA	1 cut(s)	1440
FokI	GGATG	5 cut(s)	254, 304, 674, 838, 843
FriOI	GRGCYC	1 cut(s)	110
FspBI	CTAG	1 cut(s)	1626
FspI	TGCGCA	1 cut(s)	960
GlaI	GCGC	6 cut(s)	49, 61, 295, 909, 960, 1263
GsuI	CTGGAG	2 cut(s)	107, 1538
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	8 cut(s)	108, 537, 585, 777, 836, 1058, 1154, 1568
HapII	CCGG	3 cut(s)	386, 978, 1581
HgaI	GACGC	6 cut(s)	19, 130, 1129, 1467, 1586, 1598
HhaI	GCGC	6 cut(s)	50, 62, 296, 910, 961, 1264
Hin1I	GRCGYC	2 cut(s)	141, 1578
Hin1II	CATG	6 cut(s)	658, 874, 943, 954, 1009, 1353
Hin6I	GCGC	6 cut(s)	48, 60, 294, 908, 959, 1262
HinP1I	GCGC	6 cut(s)	48, 60, 294, 908, 959, 1262
HindIII	AAGCTT	1 cut(s)	603
HinfI	GANTC	6 cut(s)	42, 190, 673, 1318, 1435, 1499
HpaII	CCGG	3 cut(s)	386, 978, 1581
HphI	GGTGA	4 cut(s)	319, 532, 727, 994
Hpy166II	GTNNAC	3 cut(s)	502, 1434, 1453
Hpy188I	TCNGA	5 cut(s)	41, 1323, 1440, 1469, 1504
Hpy188III	TCNNGA	1 cut(s)	1039
Hpy8I	GTNNAC	3 cut(s)	502, 1434, 1453
Hpy99I	CGWCG	2 cut(s)	119, 134
HpyAV	CCTTC	4 cut(s)	1042, 1073, 1186, 1540
HpyCH4III	ACNGT	3 cut(s)	380, 727, 1000
HpyCH4IV	ACGT	5 cut(s)	129, 282, 630, 843, 1251
HpyF3I	CTNAG	5 cut(s)	14, 221, 455, 1149, 1585
HpySE526I	ACGT	5 cut(s)	129, 282, 630, 843, 1251
Hsp92I	GRCGYC	2 cut(s)	141, 1578
Hsp92II	CATG	6 cut(s)	658, 874, 943, 954, 1009, 1353
HspAI	GCGC	6 cut(s)	48, 60, 294, 908, 959, 1262
KpnI	GGTACC	1 cut(s)	916
KroI	GCCGGC	1 cut(s)	1580
KroNI	GCCGGC	1 cut(s)	1582
Ksp22I	TGATCA	1 cut(s)	1440
Kzo9I	GATC	3 cut(s)	406, 1402, 1440
LguI	GCTCTTC	1 cut(s)	1204
LmnI	GCTCC	3 cut(s)	229, 799, 1224
LweI	GCATC	3 cut(s)	375, 444, 631
MaeI	CTAG	1 cut(s)	1626
MaeII	ACGT	5 cut(s)	129, 282, 630, 843, 1251
MaeIII	GTNAC	5 cut(s)	748, 1000, 1141, 1255, 1296
MalI	GATC	3 cut(s)	408, 1404, 1442
MboI	GATC	3 cut(s)	406, 1402, 1440
MfeI	CAATTG	3 cut(s)	693, 1203, 1368
MhlI	GDGCHC	4 cut(s)	78, 102, 110, 732
MlsI	TGGCCA	3 cut(s)	777, 1058, 1568
MluCI	AATT	4 cut(s)	693, 1191, 1203, 1368
MluI	ACGCGT	1 cut(s)	1476
MluNI	TGGCCA	3 cut(s)	777, 1058, 1568
MlyI	GAGTC	4 cut(s)	36, 1327, 1429, 1493
MmeI	TCCRAC	2 cut(s)	613, 880
Mox20I	TGGCCA	3 cut(s)	777, 1058, 1568
MroNI	GCCGGC	1 cut(s)	1580
MscI	TGGCCA	3 cut(s)	777, 1058, 1568
MseI	TTAA	1 cut(s)	1630
Msp20I	TGGCCA	3 cut(s)	777, 1058, 1568
MspA1I	CMGCKG	3 cut(s)	18, 611, 854
MspI	CCGG	3 cut(s)	386, 978, 1581
MspR9I	CCNGG	1 cut(s)	386
MunI	CAATTG	3 cut(s)	693, 1203, 1368
MvnI	CGCG	7 cut(s)	62, 104, 567, 591, 910, 1262, 1478
NaeI	GCCGGC	1 cut(s)	1582
NciI	CCSGG	1 cut(s)	386
NcoI	CCATGG	3 cut(s)	654, 950, 1349
NdeII	GATC	3 cut(s)	406, 1402, 1440
NgoMIV	GCCGGC	1 cut(s)	1580
NlaIII	CATG	6 cut(s)	658, 874, 943, 954, 1009, 1353
NlaIV	GGNNCC	6 cut(s)	26, 108, 109, 914, 945, 1347
NmeAIII	GCCGAG	1 cut(s)	24
NmuCI	GTSAC	3 cut(s)	748, 1000, 1141
NsbI	TGCGCA	1 cut(s)	960
PaeR7I	CTCGAG	1 cut(s)	275
PaqCI	CACCTGC	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	1204
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 1398
PdiI	GCCGGC	1 cut(s)	1582
PfeI	GAWTC	2 cut(s)	190, 673
Pfl23II	CGTACG	2 cut(s)	126, 627
PfoI	TCCNGGA	1 cut(s)	384
PleI	GAGTC	4 cut(s)	36, 1326, 1429, 1493
PpsI	GAGTC	4 cut(s)	36, 1326, 1429, 1493
Ppu21I	YACGTR	1 cut(s)	1252
PpuMI	RGGWCCY	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	25
PspEI	GGTNACC	2 cut(s)	1000, 1255
PspLI	CGTACG	2 cut(s)	126, 627
PspN4I	GGNNCC	6 cut(s)	26, 108, 109, 914, 945, 1347
PspOMI	GGGCCC	1 cut(s)	106
PspPI	GGNCC	5 cut(s)	25, 106, 107, 584, 834
PspPPI	RGGWCCY	1 cut(s)	25
PspXI	VCTCGAGB	1 cut(s)	275
PvuII	CAGCTG	2 cut(s)	18, 611
RsaI	GTAC	7 cut(s)	128, 281, 401, 629, 842, 914, 1282
RsaNI	GTAC	7 cut(s)	127, 280, 400, 628, 841, 913, 1281
SapI	GCTCTTC	1 cut(s)	1204
SaqAI	TTAA	1 cut(s)	1630
Sau3AI	GATC	3 cut(s)	406, 1402, 1440
Sau96I	GGNCC	5 cut(s)	25, 106, 107, 584, 834
SchI	GAGTC	4 cut(s)	36, 1327, 1429, 1493
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	4 cut(s)	78, 102, 110, 732
SfaNI	GCATC	3 cut(s)	375, 444, 631
Sfr274I	CTCGAG	1 cut(s)	275
SinI	GGWCC	1 cut(s)	25
SlaI	CTCGAG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	4 cut(s)	693, 1191, 1203, 1368
SspI	AATATT	1 cut(s)	69
SspMI	CTAG	1 cut(s)	1626
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	3 cut(s)	654, 950, 1349
TaaI	ACNGT	3 cut(s)	380, 727, 1000
TaiI	ACGT	5 cut(s)	132, 285, 633, 846, 1254
TaqI	TCGA	5 cut(s)	276, 405, 494, 783, 1401
TasI	AATT	4 cut(s)	693, 1191, 1203, 1368
TauI	GCSGC	4 cut(s)	949, 1125, 1267, 1527
TfiI	GAWTC	2 cut(s)	190, 673
Tru1I	TTAA	1 cut(s)	1630
Tru9I	TTAA	1 cut(s)	1630
TscAI	CASTG	3 cut(s)	732, 753, 1347
TseFI	GTSAC	3 cut(s)	748, 1000, 1141
Tsp45I	GTSAC	3 cut(s)	748, 1000, 1141
TspDTI	ATGAA	7 cut(s)	17, 241, 511, 1075, 1174, 1405, 1450
TspRI	CASTG	3 cut(s)	732, 753, 1347
VpaK11BI	GGWCC	1 cut(s)	25
XagI	CCTNNNNNAGG	2 cut(s)	198, 220
XcmI	CCANNNNNNNNNTGG	2 cut(s)	844, 1347
XhoI	CTCGAG	1 cut(s)	275
XspI	CTAG	1 cut(s)	1626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.