Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002369

Physical Location & Seq

Genomic Coordinates Reverse (-)

26943427 .. 26947683

Gene Structure 4257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1836 bp

ATGGGAGCGGGCGGCGGAGGAGACGATGAGGGAATACGGCGGAGAGGCTGCACGTACCGAAAGGACGATTTTCTTCCCGAGGAGTCGTTCCAGAGCTGGGGCAATTACGTCGATGCGCTGAAGAAGACACCGTGCCGGTTCGTGGATCGCGTCCTTTCCCGGTCGGCGGACAACACGGAGCTGGTGGAGGTGAAGGCGCGGAGTCATCACGAGATGAAGAAGAAGCTCAACTGGTGGGACCTCATCTGGTTCGGAATCGGCGTTGTCATCGGCGCCGGAATATTCGTGCTCACAGGACTGGAGGCGAAAAGGCACGCAGGCGCCGCCGTCGTGCTGTCGTACCTCGTCTCGGGCGTCTCCGCTATGCTCTCTGTTTTCTGTTACACCGAGTTCGCCGTCGAGATTCCTGTTGCAGGTGGCTCATTTGCCTACCTAAGGGTGGAGCTTGGGGACTTCGTGGCCTTCATTGCAGCAGGCAACATCCTCCTCGAGTACGTCATAAGTGGCGCAGCCGTTGCTCGTTCCTGGACATCCTACTTCACCACCCTCTGCAATCGCAGCGACACCAATGATTTCCGCATCATAGCCCACGGTTTCCCAGAGGACTACAAGTACCTCGATCCCATTGCTGTCGCTGTCCTTATCGGCATCTGCTGCCTCGCAGTCCTCAGCATAAAGGGCTCTTCTCGTCTCAACTACATTGCCTCGATTTTCCATATAATTGTCATTGTCTTCATCATCATCGCCGGCCTCACCAAAGCTGATACCAAAAACTACATCGATTTCGCCCCTTTTGGCCCGCGCGGCGTGTTCCAAGCGTCGGCTGTTGTGTTCTTCGCGTACGTTGGATTTGATGCTGTTTCAACCATGGCAGAGGAGACCAAGAATCCCGCAAAGGACATCCCAATTGGTCTTGTCGGCTCAATGGTGATTATTACAGTGCTCTATTGCTTGCTTGCACTGACATTAGGCCTTATGCAGCCGTATAACCAAATCGACGAACAAGCTGCATTTCCGGTTGCGTTTGAAGCTGTTGGGATGGGATGGGCTAAGTACATTGTGGCAGCGGGCGCATTGGAAGGCATGACAAGCGCGCTGCTTGGCGGGGCAGTTGGACAGGCTAGGTACCTCACTCACATTGCCCGAACCCACATGGTGCCACCATGGTTTGCACAAGTTGATTGCAAAACCGGCACTCCTGTCAATGCCACGGTCACCTTACTCGCAGCCACCGCAGTCATTGCCTTCTTCACGAGCCTCGATGTTCTGGCCAACCTTGTCTCCATTTCCACTCTGTTCATCTTCAGCCTTGTTGCCATCGCTCTCCTTGTTCGCCGCTACTATGTCAGCGGCGTCACAACTCAGGCCAACAGGAACAAGTTCATTGCCTGCCTTTTCATCATAATTAGCTCTTCAATTGCCACCTCTGTCTATTGGAGCAGAACAGATGATTGGATTGCCTACGTGGTAACCGCGCCGCTTTGGTTCTTGGGTACTTTAGGGATTTGGTTACTTGTCCCCCAAGCAAGGAGTCCGAAGCTCTGGGGAGTGCCACTGGTGCCATGGTTGCCATCTCTTTCAATTGCCATCAACATTTTCCTGCTCGGGTCAATCGATCACGCCTCATTCATAAGGTTTGGAGTGTGGACTCTGATCATCTTGGTTTACTACTTCATCTTCGGATTGCACGCGTCTTATGACACGGTAAAGGACTCAGAAGCGAAGAGGCTGGAGGGCGGCAGAAACAATGAGTTGAGGAAGGTTGAAGCTGCAAGGGTGGCCACGAGGGACGCCGGCTTAGACGGCGGAAATGGTAGCAATGCCTCTGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

612

Amino Acids

66.5

Weight (kDa)

7.09

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	76 - 470	8.8e-50	Amino acid permease
AA_permease	PF00324	81 - 478	9.5e-35	Amino acid permease
AA_permease_C	PF13906	515 - 565	7.8e-19	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21120 AT4G21120
fragaria_vesca	FvH4_3g09930 FvH4_3g09940
malus_domestica	MD05G1274600.v1.1 MD05G1274700.v1.1 MD05G1274900.v1.1 MD10G1254300.v1.1
prunus_persica	Prupe.4G089000_v2.0.a1 Prupe.4G089100_v2.0.a1
pyrus_communis	pycom05g25610 pycom05g25630 pycom10g21000
rosa_chinensis	RchiOBHm_Chr5g0015621 RchiOBHm_Chr5g0015661 RchiOBHm_Chr5g0015691 RchiOBHm_Chr5g0015791
rosa_laevigata	RLG00000032214 RLG00000032217 RLG00000032219
rosa_multiflora	Rmu_sc0000843.1_g000004 Rmu_sc0000843.1_g000008 Rmu_sc0003230.1_g000003 Rmu_sc0003230.1_g000005
rosa_roxburghii	Rroxscaffold_1G00060830
rosa_rugosa	Rorug01G0078300 Rorug05G0029000 Rorug05G0029100
rosa_samantha	Rh5AG122300 Rh5AG122400 Rh5AG122600 Rh5BG120900 Rh5BG121200 Rh5BG121700 Rh5CG131300 Rh5CG131900 Rh5CG132800 Rh5DG119900 Rh5DG120600
rosa_wichuraiana	Rw5G010550 Rw5G010560 Rw5G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	404
Acc65I	GGTACC	1 cut(s)	1125
AccB1I	GGYRCC	5 cut(s)	272, 320, 1125, 1156, 1558
AccBSI	CCGCTC	1 cut(s)	8
AccII	CGCG	8 cut(s)	150, 199, 802, 804, 839, 1094, 1475, 1691
AclWI	GGATC	2 cut(s)	153, 614
AcoI	YGGCCR	2 cut(s)	1269, 1779
AcsI	RAATTY	1 cut(s)	1830
AcuI	CTGAAG	2 cut(s)	140, 1288
AcyI	GRCGYC	5 cut(s)	273, 321, 354, 1353, 1791
AdeI	CACNNNGTG	1 cut(s)	1156
AfaI	GTAC	8 cut(s)	56, 341, 494, 614, 842, 1055, 1127, 1495
AfiI	CCNNNNNNNGG	9 cut(s)	97, 142, 166, 349, 413, 435, 439, 820, 1527
AflIII	ACRYGT	1 cut(s)	1689
AgsI	TTSAA	5 cut(s)	864, 1028, 1416, 1581, 1766
AjnI	CCWGG	1 cut(s)	524
AjuI	GAANNNNNNNTTGG	2 cut(s)	1435, 1467
Alw21I	GWGCWC	2 cut(s)	291, 945
Alw26I	GTCTC	6 cut(s)	15, 352, 361, 695, 872, 1285
AlwI	GGATC	2 cut(s)	153, 614
Ama87I	CYCGRG	4 cut(s)	77, 349, 488, 1604
AoxI	GGCC	7 cut(s)	459, 748, 796, 970, 1269, 1365, 1779
ApoI	RAATTY	1 cut(s)	1830
Asp700I	GAANNNNTTC	1 cut(s)	1379
Asp718I	GGTACC	1 cut(s)	1125
AspS9I	GGNCC	2 cut(s)	238, 797
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	5 cut(s)	202, 532, 745, 940, 1207
AvaI	CYCGRG	4 cut(s)	77, 349, 488, 1604
AvaII	GGWCC	1 cut(s)	238
AxyI	CCTNAGG	1 cut(s)	434
BalI	TGGCCA	2 cut(s)	1271, 1781
BanI	GGYRCC	5 cut(s)	272, 320, 1125, 1156, 1558
BanII	GRGCYC	1 cut(s)	683
BauI	CACGAG	3 cut(s)	209, 1252, 1783
BbsI	GAAGAC	2 cut(s)	131, 724
Bbv12I	GWGCWC	2 cut(s)	291, 945
BbvCI	CCTCAGC	1 cut(s)	668
BccI	CCATC	5 cut(s)	1033, 1038, 1325, 1579, 1595
BceAI	ACGGC	6 cut(s)	53, 311, 380, 497, 967, 1819
BcgI	CGANNNNNNTGC	6 cut(s)	91, 125, 608, 642, 989, 1023
BciT130I	CCWGG	1 cut(s)	526
BclI	TGATCA	1 cut(s)	1653
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	6 cut(s)	15, 352, 361, 695, 872, 1285
BfaI	CTAG	1 cut(s)	1122
BfoI	RGCGCY	2 cut(s)	276, 324
BfuAI	ACCTGC	1 cut(s)	404
BglI	GCCNNNNNGGC	1 cut(s)	804
Bme1390I	CCNGG	2 cut(s)	160, 526
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	4 cut(s)	77, 349, 488, 1604
BmgT120I	GGNCC	2 cut(s)	238, 797
BmiI	GGNNCC	6 cut(s)	239, 274, 322, 1127, 1158, 1560
BmrFI	CCNGG	2 cut(s)	160, 526
BmsI	GCATC	4 cut(s)	103, 588, 657, 844
BpiI	GAAGAC	2 cut(s)	131, 724
BpmI	CTGGAG	2 cut(s)	320, 1751
Bpu10I	CCTNAGC	1 cut(s)	668
BpuMI	CCSGG	1 cut(s)	160
Bsa29I	ATCGAT	2 cut(s)	780, 1614
BsaAI	YACGTR	2 cut(s)	54, 1465
BsaHI	GRCGYC	5 cut(s)	273, 321, 354, 1353, 1791
BsaI	GGTCTC	1 cut(s)	872
BsaJI	CCNNGG	6 cut(s)	78, 589, 867, 1163, 1209, 1562
BsaWI	WCCGGW	1 cut(s)	1015
BsaXI	ACNNNNNCTCC	4 cut(s)	1180, 1210, 1265, 1295
Bsc4I	CCNNNNNNNGG	9 cut(s)	97, 142, 166, 349, 413, 435, 439, 820, 1527
Bse118I	RCCGGY	4 cut(s)	135, 746, 1190, 1793
Bse1I	ACTGG	3 cut(s)	236, 303, 1560
Bse21I	CCTNAGG	1 cut(s)	434
Bse3DI	GCAATG	7 cut(s)	465, 624, 699, 1137, 1239, 1383, 1825
BseBI	CCWGG	1 cut(s)	526
BseCI	ATCGAT	2 cut(s)	780, 1614
BseDI	CCNNGG	6 cut(s)	78, 589, 867, 1163, 1209, 1562
BseGI	GGATG	5 cut(s)	480, 530, 900, 1044, 1049
BseLI	CCNNNNNNNGG	9 cut(s)	97, 142, 166, 349, 413, 435, 439, 820, 1527
BseMI	GCAATG	7 cut(s)	465, 624, 699, 1137, 1239, 1383, 1825
BseMII	CTCAG	3 cut(s)	682, 1376, 1728
BseNI	ACTGG	3 cut(s)	236, 303, 1560
BsePI	GCGCGC	1 cut(s)	1092
BseRI	GAGGAG	4 cut(s)	33, 95, 476, 890
BseYI	CCCAGC	1 cut(s)	96
BsgI	GTGCAG	1 cut(s)	34
Bsh1236I	CGCG	8 cut(s)	150, 199, 802, 804, 839, 1094, 1475, 1691
Bsh1285I	CGRYCG	1 cut(s)	164
BshFI	GGCC	7 cut(s)	461, 750, 798, 972, 1271, 1367, 1781
BshNI	GGYRCC	5 cut(s)	272, 320, 1125, 1156, 1558
BshVI	ATCGAT	2 cut(s)	780, 1614
BsiEI	CGRYCG	1 cut(s)	164
BsiHKAI	GWGCWC	2 cut(s)	291, 945
BsiHKCI	CYCGRG	4 cut(s)	77, 349, 488, 1604
BsiSI	CCGG	7 cut(s)	136, 160, 276, 747, 1016, 1191, 1794
BsiWI	CGTACG	1 cut(s)	840
BslFI	GGGAC	4 cut(s)	251, 464, 1502, 1802
BslI	CCNNNNNNNGG	9 cut(s)	97, 142, 166, 349, 413, 435, 439, 820, 1527
BsmAI	GTCTC	6 cut(s)	15, 352, 361, 695, 872, 1285
BsmBI	CGTCTC	4 cut(s)	15, 352, 361, 695
BsmFI	GGGAC	4 cut(s)	251, 464, 1502, 1802
BsnI	GGCC	7 cut(s)	461, 750, 798, 972, 1271, 1367, 1781
Bso31I	GGTCTC	1 cut(s)	872
BsoBI	CYCGRG	4 cut(s)	77, 349, 488, 1604
Bsp1286I	GDGCHC	3 cut(s)	291, 683, 945
Bsp143I	GATC	4 cut(s)	145, 619, 1615, 1653
Bsp19I	CCATGG	3 cut(s)	867, 1163, 1562
BspANI	GGCC	7 cut(s)	461, 750, 798, 972, 1271, 1367, 1781
BspCNI	CTCAG	3 cut(s)	681, 1375, 1727
BspDI	ATCGAT	2 cut(s)	780, 1614
BspFNI	CGCG	8 cut(s)	150, 199, 802, 804, 839, 1094, 1475, 1691
BspLI	GGNNCC	6 cut(s)	239, 274, 322, 1127, 1158, 1560
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	2 cut(s)	153, 614
BspQI	GCTCTTC	2 cut(s)	688, 1417
BspT107I	GGYRCC	5 cut(s)	272, 320, 1125, 1156, 1558
BspTNI	GGTCTC	1 cut(s)	872
BsrBI	CCGCTC	1 cut(s)	8
BsrDI	GCAATG	7 cut(s)	465, 624, 699, 1137, 1239, 1383, 1825
BsrFI	RCCGGY	4 cut(s)	135, 746, 1190, 1793
BsrI	ACTGG	3 cut(s)	236, 303, 1560
BssAI	RCCGGY	4 cut(s)	135, 746, 1190, 1793
BssECI	CCNNGG	6 cut(s)	78, 589, 867, 1163, 1209, 1562
BssHII	GCGCGC	1 cut(s)	1092
BssMI	GATC	4 cut(s)	145, 619, 1615, 1653
BssNI	GRCGYC	5 cut(s)	273, 321, 354, 1353, 1791
BssSI	CACGAG	3 cut(s)	209, 1252, 1783
BssT1I	CCWWGG	3 cut(s)	867, 1163, 1562
Bst2BI	CACGAG	3 cut(s)	209, 1252, 1783
Bst2UI	CCWGG	1 cut(s)	526
Bst4CI	ACNGT	5 cut(s)	132, 593, 940, 1213, 1705
Bst6I	CTCTTC	3 cut(s)	688, 1417, 1718
BstACI	GRCGYC	5 cut(s)	273, 321, 354, 1353, 1791
BstAPI	GCANNNNNTGC	3 cut(s)	515, 654, 1241
BstBAI	YACGTR	2 cut(s)	54, 1465
BstDEI	CTNAG	6 cut(s)	434, 668, 1050, 1362, 1714, 1798
BstDSI	CCRYGG	5 cut(s)	589, 867, 1163, 1209, 1562
BstEII	GGTNACC	2 cut(s)	1213, 1468
BstENI	CCTNNNNNAGG	2 cut(s)	411, 433
BstF5I	GGATG	5 cut(s)	480, 530, 900, 1044, 1049
BstFNI	CGCG	8 cut(s)	150, 199, 802, 804, 839, 1094, 1475, 1691
BstH2I	RGCGCY	2 cut(s)	276, 324
BstKTI	GATC	4 cut(s)	148, 622, 1618, 1656
BstMAI	GTCTC	6 cut(s)	15, 352, 361, 695, 872, 1285
BstMBI	GATC	4 cut(s)	145, 619, 1615, 1653
BstMCI	CGRYCG	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	526
BstPI	GGTNACC	2 cut(s)	1213, 1468
BstSCI	CCNGG	2 cut(s)	158, 524
BstUI	CGCG	8 cut(s)	150, 199, 802, 804, 839, 1094, 1475, 1691
BstV2I	GAAGAC	2 cut(s)	131, 724
Bsu15I	ATCGAT	2 cut(s)	780, 1614
Bsu36I	CCTNAGG	1 cut(s)	434
BsuRI	GGCC	7 cut(s)	461, 750, 798, 972, 1271, 1367, 1781
BsuTUI	ATCGAT	2 cut(s)	780, 1614
BtgI	CCRYGG	5 cut(s)	589, 867, 1163, 1209, 1562
BtgZI	GCGATG	2 cut(s)	727, 1303
BtsCI	GGATG	5 cut(s)	480, 530, 900, 1044, 1049
BtsIMutI	CAGTG	3 cut(s)	945, 959, 1553
BveI	ACCTGC	1 cut(s)	404
Cfr10I	RCCGGY	4 cut(s)	135, 746, 1190, 1793
Cfr13I	GGNCC	2 cut(s)	238, 797
ClaI	ATCGAT	2 cut(s)	780, 1614
CseI	GACGC	6 cut(s)	139, 343, 807, 1342, 1680, 1799
Csp6I	GTAC	8 cut(s)	55, 340, 493, 613, 841, 1054, 1126, 1494
CviAII	CATG	5 cut(s)	868, 1084, 1153, 1164, 1563
CviQI	GTAC	8 cut(s)	55, 340, 493, 613, 841, 1054, 1126, 1494
DdeI	CTNAG	6 cut(s)	434, 668, 1050, 1362, 1714, 1798
DinI	GGCGCC	2 cut(s)	274, 322
DpnI	GATC	4 cut(s)	147, 621, 1617, 1655
DpnII	GATC	4 cut(s)	145, 619, 1615, 1653
DraIII	CACNNNGTG	1 cut(s)	1156
EaeI	YGGCCR	2 cut(s)	1269, 1779
Eam1104I	CTCTTC	3 cut(s)	688, 1417, 1718
EarI	CTCTTC	3 cut(s)	688, 1417, 1718
EciI	GGCGGA	4 cut(s)	30, 55, 182, 1821
Eco130I	CCWWGG	3 cut(s)	867, 1163, 1562
Eco147I	AGGCCT	1 cut(s)	972
Eco24I	GRGCYC	1 cut(s)	683
Eco31I	GGTCTC	1 cut(s)	872
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	2 cut(s)	140, 1288
Eco81I	CCTNAGG	1 cut(s)	434
Eco88I	CYCGRG	4 cut(s)	77, 349, 488, 1604
Eco91I	GGTNACC	2 cut(s)	1213, 1468
EcoNI	CCTNNNNNAGG	2 cut(s)	411, 433
EcoO109I	RGGNCCY	1 cut(s)	238
EcoO65I	GGTNACC	2 cut(s)	1213, 1468
EcoRII	CCWGG	1 cut(s)	524
EcoT14I	CCWWGG	3 cut(s)	867, 1163, 1562
EcoT38I	GRGCYC	1 cut(s)	683
EgeI	GGCGCC	2 cut(s)	274, 322
EheI	GGCGCC	2 cut(s)	274, 322
ErhI	CCWWGG	3 cut(s)	867, 1163, 1562
Esp3I	CGTCTC	4 cut(s)	15, 352, 361, 695
FaeI	CATG	5 cut(s)	871, 1087, 1156, 1167, 1566
FaqI	GGGAC	4 cut(s)	251, 464, 1502, 1802
FatI	CATG	5 cut(s)	867, 1083, 1152, 1163, 1562
FauI	CCCGC	4 cut(s)	807, 898, 1060, 1097
FbaI	TGATCA	1 cut(s)	1653
FokI	GGATG	5 cut(s)	467, 517, 887, 1051, 1056
FriOI	GRGCYC	1 cut(s)	683
FspBI	CTAG	1 cut(s)	1122
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	2 cut(s)	320, 1751
HaeII	RGCGCY	2 cut(s)	276, 324
HaeIII	GGCC	7 cut(s)	461, 750, 798, 972, 1271, 1367, 1781
HapII	CCGG	7 cut(s)	136, 160, 276, 747, 1016, 1191, 1794
HgaI	GACGC	6 cut(s)	139, 343, 807, 1342, 1680, 1799
Hin1I	GRCGYC	5 cut(s)	273, 321, 354, 1353, 1791
Hin1II	CATG	5 cut(s)	871, 1087, 1156, 1167, 1566
HinfI	GANTC	8 cut(s)	83, 202, 255, 403, 886, 1531, 1648, 1712
HpaII	CCGG	7 cut(s)	136, 160, 276, 747, 1016, 1191, 1794
HphI	GGTGA	5 cut(s)	202, 532, 745, 940, 1207
Hpy166II	GTNNAC	2 cut(s)	1647, 1666
Hpy188I	TCNGA	6 cut(s)	254, 1536, 1653, 1682, 1717, 1828
Hpy188III	TCNNGA	5 cut(s)	77, 91, 209, 400, 1252
Hpy8I	GTNNAC	2 cut(s)	1647, 1666
Hpy99I	CGWCG	5 cut(s)	113, 332, 401, 823, 1001
HpyAV	CCTTC	5 cut(s)	187, 472, 1073, 1255, 1753
HpyCH4III	ACNGT	5 cut(s)	132, 593, 940, 1213, 1705
HpyCH4IV	ACGT	5 cut(s)	53, 108, 495, 843, 1464
HpyF3I	CTNAG	6 cut(s)	434, 668, 1050, 1362, 1714, 1798
HpySE526I	ACGT	5 cut(s)	53, 108, 495, 843, 1464
Hsp92I	GRCGYC	5 cut(s)	273, 321, 354, 1353, 1791
Hsp92II	CATG	5 cut(s)	871, 1087, 1156, 1167, 1566
KasI	GGCGCC	2 cut(s)	272, 320
KpnI	GGTACC	1 cut(s)	1129
KroI	GCCGGC	2 cut(s)	746, 1793
KroNI	GCCGGC	2 cut(s)	748, 1795
Ksp22I	TGATCA	1 cut(s)	1653
Kzo9I	GATC	4 cut(s)	145, 619, 1615, 1653
LguI	GCTCTTC	2 cut(s)	688, 1417
LmnI	GCTCC	4 cut(s)	5, 178, 442, 1437
LweI	GCATC	4 cut(s)	103, 588, 657, 844
MaeI	CTAG	1 cut(s)	1122
MaeII	ACGT	5 cut(s)	53, 108, 495, 843, 1464
MaeIII	GTNAC	5 cut(s)	380, 1213, 1354, 1468, 1509
MalI	GATC	4 cut(s)	147, 621, 1617, 1655
MbiI	CCGCTC	1 cut(s)	8
MboI	GATC	4 cut(s)	145, 619, 1615, 1653
MfeI	CAATTG	3 cut(s)	906, 1416, 1581
MhlI	GDGCHC	3 cut(s)	291, 683, 945
MlsI	TGGCCA	2 cut(s)	1271, 1781
MluCI	AATT	7 cut(s)	103, 720, 906, 1404, 1416, 1581, 1830
MluI	ACGCGT	1 cut(s)	1689
MluNI	TGGCCA	2 cut(s)	1271, 1781
Mly113I	GGCGCC	2 cut(s)	273, 321
MlyI	GAGTC	5 cut(s)	92, 211, 1540, 1642, 1706
MmeI	TCCRAC	2 cut(s)	826, 1093
Mox20I	TGGCCA	2 cut(s)	1271, 1781
MroNI	GCCGGC	2 cut(s)	746, 1793
MroXI	GAANNNNTTC	1 cut(s)	1379
MscI	TGGCCA	2 cut(s)	1271, 1781
MseI	TTAA	1 cut(s)	1834
Msp20I	TGGCCA	2 cut(s)	1271, 1781
MspA1I	CMGCKG	2 cut(s)	1067, 1350
MspI	CCGG	7 cut(s)	136, 160, 276, 747, 1016, 1191, 1794
MspR9I	CCNGG	2 cut(s)	160, 526
MunI	CAATTG	3 cut(s)	906, 1416, 1581
MvaI	CCWGG	1 cut(s)	526
MvnI	CGCG	8 cut(s)	150, 199, 802, 804, 839, 1094, 1475, 1691
NaeI	GCCGGC	2 cut(s)	748, 1795
NarI	GGCGCC	2 cut(s)	273, 321
NciI	CCSGG	1 cut(s)	160
NcoI	CCATGG	3 cut(s)	867, 1163, 1562
NdeII	GATC	4 cut(s)	145, 619, 1615, 1653
NgoMIV	GCCGGC	2 cut(s)	746, 1793
NlaIII	CATG	5 cut(s)	871, 1087, 1156, 1167, 1566
NlaIV	GGNNCC	6 cut(s)	239, 274, 322, 1127, 1158, 1560
NmuCI	GTSAC	2 cut(s)	1213, 1354
PaeR7I	CTCGAG	1 cut(s)	488
PaqCI	CACCTGC	1 cut(s)	404
PauI	GCGCGC	1 cut(s)	1092
PceI	AGGCCT	1 cut(s)	972
PciSI	GCTCTTC	2 cut(s)	688, 1417
PcsI	WCGNNNNNNNCGW	4 cut(s)	147, 258, 351, 1611
PdiI	GCCGGC	2 cut(s)	748, 1795
PdmI	GAANNNNTTC	1 cut(s)	1379
PfeI	GAWTC	3 cut(s)	255, 403, 886
Pfl23II	CGTACG	1 cut(s)	840
PfoI	TCCNGGA	1 cut(s)	524
PleI	GAGTC	5 cut(s)	91, 210, 1539, 1642, 1706
PluTI	GGCGCC	2 cut(s)	276, 324
PpsI	GAGTC	5 cut(s)	91, 210, 1539, 1642, 1706
Ppu21I	YACGTR	2 cut(s)	54, 1465
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	524
PspEI	GGTNACC	2 cut(s)	1213, 1468
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	524
PspLI	CGTACG	1 cut(s)	840
PspN4I	GGNNCC	6 cut(s)	239, 274, 322, 1127, 1158, 1560
PspPI	GGNCC	2 cut(s)	238, 797
PspPPI	RGGWCCY	1 cut(s)	238
PspXI	VCTCGAGB	1 cut(s)	488
PteI	GCGCGC	1 cut(s)	1092
RsaI	GTAC	8 cut(s)	56, 341, 494, 614, 842, 1055, 1127, 1495
RsaNI	GTAC	8 cut(s)	55, 340, 493, 613, 841, 1054, 1126, 1494
SapI	GCTCTTC	2 cut(s)	688, 1417
SaqAI	TTAA	1 cut(s)	1834
Sau3AI	GATC	4 cut(s)	145, 619, 1615, 1653
Sau96I	GGNCC	2 cut(s)	238, 797
SchI	GAGTC	5 cut(s)	92, 211, 1540, 1642, 1706
ScrFI	CCNGG	2 cut(s)	160, 526
SduI	GDGCHC	3 cut(s)	291, 683, 945
SfaNI	GCATC	4 cut(s)	103, 588, 657, 844
SfoI	GGCGCC	2 cut(s)	274, 322
Sfr274I	CTCGAG	1 cut(s)	488
SinI	GGWCC	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	7 cut(s)	103, 720, 906, 1404, 1416, 1581, 1830
SseBI	AGGCCT	1 cut(s)	972
SspDI	GGCGCC	2 cut(s)	272, 320
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	1 cut(s)	1122
StuI	AGGCCT	1 cut(s)	972
StyD4I	CCNGG	2 cut(s)	158, 524
StyI	CCWWGG	3 cut(s)	867, 1163, 1562
TaaI	ACNGT	5 cut(s)	132, 593, 940, 1213, 1705
TaiI	ACGT	5 cut(s)	56, 111, 498, 846, 1467
TaqI	TCGA	9 cut(s)	111, 399, 489, 618, 707, 780, 996, 1260, 1614
TasI	AATT	7 cut(s)	103, 720, 906, 1404, 1416, 1581, 1830
TatI	WGTACW	1 cut(s)	1053
TauI	GCSGC	7 cut(s)	15, 326, 807, 1338, 1353, 1480, 1740
TfiI	GAWTC	3 cut(s)	255, 403, 886
Tru1I	TTAA	1 cut(s)	1834
Tru9I	TTAA	1 cut(s)	1834
TscAI	CASTG	3 cut(s)	945, 966, 1560
TseFI	GTSAC	2 cut(s)	1213, 1354
Tsp45I	GTSAC	2 cut(s)	1213, 1354
TspDTI	ATGAA	8 cut(s)	230, 454, 724, 1288, 1372, 1387, 1618, 1663
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	3 cut(s)	945, 966, 1560
VpaK11BI	GGWCC	1 cut(s)	238
XagI	CCTNNNNNAGG	2 cut(s)	411, 433
XapI	RAATTY	1 cut(s)	1830
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1560
XhoI	CTCGAG	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	1379
XspI	CTAG	1 cut(s)	1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.