Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002369

Physical Location & Seq

Genomic Coordinates Forward (+)

11001982 .. 11005881

Gene Structure 3900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG131300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1836 bp

ATGGGGATGAGCGGAACGGAACCGACCGGCGGCGGCGGCGAGGGGCTGAAGAGGAGGGGGTGTTCGTGCGGAAAGAACGATTTTCTCCCGGAGGAGTCGTTCGAGAGCTGGGGCAATTACGCCAATGCGCTCCGGTCGACTCCGGCGAGGTTCAAGGACAGGTTCTTCACGCGGTCCTCCGACAGCACCGAGCTGGTGGAGGTGAAGGCGCGGAGCCAGCACGAGATGAAGAAGACGCTTAACTGGTGGGACCTCATCTGGTTCGGGCTCGGAGCTGTCATCGGCGCCGGAATCTTCGTCCTCACTGGACTCGAGGCCAAGAAACACGCCGGACCCGCCGTCGTCATGTCCTACGTCGTCTCCGGCGTCTCCGCCTTGCTCTCTGTTTTCTGTTACACAGAGTTCGCCGTCGAGATTCCCGTTGCAGGCGGCTCATTTGCCTACCTAAGAGTGGAGCTTGGGGACTTCGTGGCCTACATTGCAGCAGGCAACATCCTTCTCGAATATGTCATAGGCGGGGCGGCGGTTGCGCGTTCGTGGACCTCCTACTTCACCTCCCTATGCAACCAGGACGATTCCAATGCTTTCCGAATCACTGTCCACGGTTGGTCGGAGGACTACAAGTACCTGGACCCCATCGCCATTGGGGTTATCATCTGTATCTGCATACTCGCCGTCTTGAGCACAAAGGGCTCCTCGCGCCTCAACTACGTCGCCTCCATAGTCCACGTCATCGTCATTCTCTTCATCATCATAGCAGGTCTCACCAAAGCAGATACTGACAACTACAAGGAGTTTGCCCCAAATGGTGCTCGCGGCATCTTCCAAGCCTCGGCAGTTCTCTTCTTTGCATACGTTGGATTTGACGCCGTTTCAACCATGGCCGAAGAGACCAAGAATCCTGCTCGAGACATCCCAATAGGGCTGGTTGGGTCCATGGTGATCACCACCACGCTTTATTGCTTGCTAGCCGTGACACTCTGCCTTATGGTACCATATCAGGTAATTGATGTGGACGCTCCATTTTCAAAAGCGTTTGAGACCGTTGGTATGGGTTGGGCCAAGTATGTGGTTGCAGCTGGAGCTCTAAAAGGCATGACTAGTGTTTTGCTCGTCGGGGCAGTGGGTCAGGCCCGGTATTTGACCCACATTGCCCGAACCCACATGATGCCCCCATGGTTTGCTCAAGTTGATGCCAAGACAGGTACTCCAGTCCATGCCACAATTGTCATGCTCGCAGCCACAGCTGTAATCGCTTTCTTCACCAGCCTCGAAATTCTTGCTAACCTTCTCTCCATTTCTACGCTATTCATCTTCAGCCTCGTTGCCATTGCTCTACTCGTACGCCGTTACTATGTAACCGGCGTGACCACGGATGCAAACAGGAATAAGCTCATACTGTGCATTGTTATGATTCTCGCGGGTGCAATTGCCACTTCTGCTTACTGGGGTGTCAGCCATGATTGGGTAGGGTATTGCGTGACGGCTCCTATTTGGTTCTTGGGGACTTTGGGGATTTGGTTTCTTGTTCCACAAGCAAGGAGTCCAAAGCTTTGGGGGGTGCCATTGGTTCCATGGTTGCCTTCACTTTCGATTGGCATCAACATTTTCTTGCTTGGTTCGATTGATGGTGCTTCTTTTGCCAGGTTTGCAGTATGGACTGTGATTATCTTAGTTTACTACATTTTCTTTGGGTTGCATGCTTCATATGACACAGCAAAGGACTCTGAAGCTAAAAGGCTCGAGGGTGGGAAATACGAGACGAAGGTTGAAGGAACTAAGGACTCTGGTTTGGATGGTGCGTATAGCAAGGCCTCTACAGAACCTGCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

611

Amino Acids

66.01

Weight (kDa)

6.76

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	80 - 478	9e-49	Amino acid permease
AA_permease	PF00324	85 - 477	4.7e-34	Amino acid permease
AA_permease_C	PF13906	519 - 569	1.8e-17	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21120 AT4G21120
fragaria_vesca	FvH4_3g09930 FvH4_3g09940
malus_domestica	MD05G1274600.v1.1 MD05G1274700.v1.1 MD05G1274900.v1.1 MD10G1254300.v1.1
prunus_persica	Prupe.4G089000_v2.0.a1 Prupe.4G089100_v2.0.a1
pyrus_communis	pycom05g25610 pycom05g25630 pycom10g21000
rosa_chinensis	RchiOBHm_Chr5g0015621 RchiOBHm_Chr5g0015661 RchiOBHm_Chr5g0015691 RchiOBHm_Chr5g0015791
rosa_laevigata	RLG00000032214 RLG00000032217 RLG00000032219
rosa_multiflora	Rmu_sc0000843.1_g000004 Rmu_sc0000843.1_g000008 Rmu_sc0003230.1_g000003 Rmu_sc0003230.1_g000005
rosa_roxburghii	Rroxscaffold_1G00060830
rosa_rugosa	Rorug01G0078300 Rorug05G0029000 Rorug05G0029100
rosa_samantha	Rh5AG122300 Rh5AG122400 Rh5AG122600 Rh5BG120900 Rh5BG121200 Rh5BG121700 Rh5CG131300 Rh5CG131900 Rh5CG132800 Rh5DG119900 Rh5DG120600
rosa_wichuraiana	Rw5G010550 Rw5G010560 Rw5G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	749
Acc65I	GGTACC	1 cut(s)	991
AccB1I	GGYRCC	3 cut(s)	284, 991, 1561
AccBSI	CCGCTC	1 cut(s)	12
AccI	GTMKAC	1 cut(s)	137
AccII	CGCG	6 cut(s)	172, 211, 532, 700, 816, 1421
AcoI	YGGCCR	1 cut(s)	882
AcsI	RAATTY	1 cut(s)	1275
AcuI	CTGAAG	3 cut(s)	68, 1300, 1749
AcyI	GRCGYC	3 cut(s)	285, 366, 867
AfaI	GTAC	4 cut(s)	626, 993, 1207, 1344
AfiI	CCNNNNNNNGG	5 cut(s)	29, 425, 451, 832, 1465
AgsI	TTSAA	4 cut(s)	154, 876, 1029, 1772
AhdI	GACNNNNNGTC	1 cut(s)	338
AhlI	ACTAGT	1 cut(s)	1100
AjiI	CACGTC	1 cut(s)	730
AjnI	CCWGG	3 cut(s)	567, 627, 1643
AloI	GAACNNNNNNTCC	4 cut(s)	46, 78, 83, 115
Alw21I	GWGCWC	3 cut(s)	686, 814, 1087
Alw26I	GTCTC	7 cut(s)	364, 373, 767, 884, 903, 1034, 1754
AlwNI	CAGNNNCTG	2 cut(s)	779, 1826
Ama87I	CYCGRG	3 cut(s)	311, 906, 1742
AoxI	GGCC	6 cut(s)	315, 471, 882, 1059, 1131, 1812
ApeKI	GCWGC	3 cut(s)	482, 1076, 1238
ApoI	RAATTY	1 cut(s)	1275
ArsI	GACNNNNNNTTYG	2 cut(s)	1090, 1122
Asp718I	GGTACC	1 cut(s)	991
AspLEI	GCGC	5 cut(s)	130, 211, 287, 532, 702
AspS9I	GGNCC	8 cut(s)	174, 250, 332, 540, 631, 933, 1059, 1132
AsuC2I	CCSGG	2 cut(s)	89, 1135
AsuHPI	GGTGA	6 cut(s)	214, 544, 757, 937, 952, 1255
AsuNHI	GCTAGC	1 cut(s)	967
AvaI	CYCGRG	3 cut(s)	311, 906, 1742
AvaII	GGWCC	6 cut(s)	174, 250, 332, 540, 631, 933
BaeI	ACNNNNGTAYC	2 cut(s)	1197, 1230
BanI	GGYRCC	3 cut(s)	284, 991, 1561
BanII	GRGCYC	3 cut(s)	270, 695, 1087
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	3 cut(s)	686, 814, 1087
BbvI	GCAGC	3 cut(s)	494, 1088, 1250
BccI	CCATC	3 cut(s)	644, 1622, 1790
BceAI	ACGGC	7 cut(s)	323, 392, 659, 854, 956, 1332, 1500
BcgI	CGANNNNNNTGC	4 cut(s)	563, 597, 1262, 1296
BciT130I	CCWGG	3 cut(s)	569, 629, 1645
BclI	TGATCA	1 cut(s)	942
BcnI	CCSGG	2 cut(s)	89, 1135
BcoDI	GTCTC	7 cut(s)	364, 373, 767, 884, 903, 1034, 1754
BcuI	ACTAGT	1 cut(s)	1100
BfaI	CTAG	3 cut(s)	968, 1101, 1830
BfmI	CTRYAG	1 cut(s)	1818
BfoI	RGCGCY	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	749
BisI	GCNGC	9 cut(s)	31, 34, 37, 430, 483, 522, 817, 1077, 1239
BlsI	GCNGC	9 cut(s)	32, 35, 38, 431, 484, 523, 818, 1078, 1240
Bme1390I	CCNGG	5 cut(s)	89, 569, 629, 1135, 1645
Bme18I	GGWCC	6 cut(s)	174, 250, 332, 540, 631, 933
BmeRI	GACNNNNNGTC	1 cut(s)	338
BmeT110I	CYCGRG	3 cut(s)	311, 906, 1742
BmgBI	CACGTC	1 cut(s)	730
BmgT120I	GGNCC	8 cut(s)	174, 250, 332, 540, 631, 933, 1059, 1132
BmrFI	CCNGG	5 cut(s)	89, 569, 629, 1135, 1645
BmrI	ACTGGG	1 cut(s)	1456
BmsI	GCATC	5 cut(s)	828, 1158, 1183, 1366, 1608
BmtI	GCTAGC	1 cut(s)	971
BmuI	ACTGGG	1 cut(s)	1456
BpiI	GAAGAC	1 cut(s)	239
BpmI	CTGGAG	2 cut(s)	1101, 1194
BpuEI	CTTGAG	2 cut(s)	700, 1170
BpuMI	CCSGG	2 cut(s)	89, 1135
BsaBI	GATNNNNATC	1 cut(s)	1598
BsaHI	GRCGYC	3 cut(s)	285, 366, 867
BsaI	GGTCTC	3 cut(s)	767, 884, 1034
BsaJI	CCNNGG	7 cut(s)	601, 831, 879, 936, 1175, 1371, 1574
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 425, 451, 832, 1465
Bse118I	RCCGGY	2 cut(s)	26, 1361
Bse1I	ACTGG	4 cut(s)	248, 310, 1211, 1451
Bse3DI	GCAATG	3 cut(s)	477, 1149, 1329
Bse8I	GATNNNNATC	1 cut(s)	1598
BseBI	CCWGG	3 cut(s)	569, 629, 1645
BseDI	CCNNGG	7 cut(s)	601, 831, 879, 936, 1175, 1371, 1574
BseGI	GGATG	5 cut(s)	12, 492, 912, 1381, 1801
BseJI	GATNNNNATC	1 cut(s)	1598
BseLI	CCNNNNNNNGG	5 cut(s)	29, 425, 451, 832, 1465
BseMI	GCAATG	3 cut(s)	477, 1149, 1329
BseNI	ACTGG	4 cut(s)	248, 310, 1211, 1451
BseRI	GAGGAG	3 cut(s)	67, 107, 685
BseXI	GCAGC	3 cut(s)	494, 1088, 1250
BseYI	CCCAGC	1 cut(s)	108
Bsh1236I	CGCG	6 cut(s)	172, 211, 532, 700, 816, 1421
Bsh1285I	CGRYCG	2 cut(s)	27, 137
BshFI	GGCC	6 cut(s)	317, 473, 884, 1061, 1133, 1814
BshNI	GGYRCC	3 cut(s)	284, 991, 1561
BsiEI	CGRYCG	2 cut(s)	27, 137
BsiHKAI	GWGCWC	3 cut(s)	686, 814, 1087
BsiHKCI	CYCGRG	3 cut(s)	311, 906, 1742
BsiSI	CCGG	9 cut(s)	27, 89, 133, 143, 288, 330, 363, 1135, 1362
BsiWI	CGTACG	1 cut(s)	1342
BslFI	GGGAC	3 cut(s)	263, 476, 1519
BslI	CCNNNNNNNGG	5 cut(s)	29, 425, 451, 832, 1465
BsmAI	GTCTC	7 cut(s)	364, 373, 767, 884, 903, 1034, 1754
BsmBI	CGTCTC	3 cut(s)	364, 373, 1754
BsmFI	GGGAC	3 cut(s)	263, 476, 1519
BsnI	GGCC	6 cut(s)	317, 473, 884, 1061, 1133, 1814
Bso31I	GGTCTC	3 cut(s)	767, 884, 1034
BsoBI	CYCGRG	3 cut(s)	311, 906, 1742
Bsp1286I	GDGCHC	5 cut(s)	270, 686, 695, 814, 1087
Bsp143I	GATC	1 cut(s)	942
Bsp19I	CCATGG	4 cut(s)	879, 936, 1175, 1574
BspANI	GGCC	6 cut(s)	317, 473, 884, 1061, 1133, 1814
BspFNI	CGCG	6 cut(s)	172, 211, 532, 700, 816, 1421
BspMI	ACCTGC	1 cut(s)	749
BspOI	GCTAGC	1 cut(s)	971
BspT107I	GGYRCC	3 cut(s)	284, 991, 1561
BspTNI	GGTCTC	3 cut(s)	767, 884, 1034
BsrBI	CCGCTC	1 cut(s)	12
BsrDI	GCAATG	3 cut(s)	477, 1149, 1329
BsrFI	RCCGGY	2 cut(s)	26, 1361
BsrI	ACTGG	4 cut(s)	248, 310, 1211, 1451
BssAI	RCCGGY	2 cut(s)	26, 1361
BssECI	CCNNGG	7 cut(s)	601, 831, 879, 936, 1175, 1371, 1574
BssMI	GATC	1 cut(s)	942
BssNI	GRCGYC	3 cut(s)	285, 366, 867
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	4 cut(s)	879, 936, 1175, 1574
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	3 cut(s)	569, 629, 1645
Bst4CI	ACNGT	5 cut(s)	598, 605, 1045, 1401, 1663
Bst6I	CTCTTC	4 cut(s)	44, 749, 848, 882
BstACI	GRCGYC	3 cut(s)	285, 366, 867
BstC8I	GCNNGC	8 cut(s)	218, 427, 487, 814, 965, 969, 1236, 1701
BstDEI	CTNAG	3 cut(s)	446, 1672, 1779
BstDSI	CCRYGG	6 cut(s)	601, 879, 936, 1175, 1371, 1574
BstF5I	GGATG	5 cut(s)	12, 492, 912, 1381, 1801
BstFNI	CGCG	6 cut(s)	172, 211, 532, 700, 816, 1421
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	5 cut(s)	130, 211, 287, 532, 702
BstKTI	GATC	1 cut(s)	945
BstMAI	GTCTC	7 cut(s)	364, 373, 767, 884, 903, 1034, 1754
BstMBI	GATC	1 cut(s)	942
BstMCI	CGRYCG	2 cut(s)	27, 137
BstNI	CCWGG	3 cut(s)	569, 629, 1645
BstNSI	RCATGY	1 cut(s)	1703
BstSCI	CCNGG	5 cut(s)	87, 567, 627, 1133, 1643
BstSFI	CTRYAG	1 cut(s)	1818
BstUI	CGCG	6 cut(s)	172, 211, 532, 700, 816, 1421
BstV1I	GCAGC	3 cut(s)	494, 1088, 1250
BstV2I	GAAGAC	1 cut(s)	239
BstXI	CCANNNNNNTGG	2 cut(s)	1069, 1554
BsuRI	GGCC	6 cut(s)	317, 473, 884, 1061, 1133, 1814
BtgI	CCRYGG	6 cut(s)	601, 879, 936, 1175, 1371, 1574
BtgZI	GCGATG	1 cut(s)	622
BtrI	CACGTC	1 cut(s)	730
BtsCI	GGATG	5 cut(s)	12, 492, 912, 1381, 1801
BtsI	GCAGTG	1 cut(s)	1128
BtsIMutI	CAGTG	3 cut(s)	303, 594, 1128
BveI	ACCTGC	1 cut(s)	749
Cac8I	GCNNGC	8 cut(s)	218, 427, 487, 814, 965, 969, 1236, 1701
CaiI	CAGNNNCTG	2 cut(s)	779, 1826
CfoI	GCGC	5 cut(s)	130, 211, 287, 532, 702
Cfr10I	RCCGGY	2 cut(s)	26, 1361
Cfr13I	GGNCC	8 cut(s)	174, 250, 332, 540, 631, 933, 1059, 1132
CseI	GACGC	4 cut(s)	244, 355, 875, 1025
Csp6I	GTAC	4 cut(s)	625, 992, 1206, 1343
CviQI	GTAC	4 cut(s)	625, 992, 1206, 1343
DdeI	CTNAG	3 cut(s)	446, 1672, 1779
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	1 cut(s)	944
DpnII	GATC	1 cut(s)	942
DriI	GACNNNNNGTC	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	882
Eam1104I	CTCTTC	4 cut(s)	44, 749, 848, 882
Eam1105I	GACNNNNNGTC	1 cut(s)	338
EarI	CTCTTC	4 cut(s)	44, 749, 848, 882
EciI	GGCGGA	1 cut(s)	361
Ecl136II	GAGCTC	1 cut(s)	1085
Eco130I	CCWWGG	4 cut(s)	879, 936, 1175, 1574
Eco147I	AGGCCT	1 cut(s)	1814
Eco24I	GRGCYC	3 cut(s)	270, 695, 1087
Eco31I	GGTCTC	3 cut(s)	767, 884, 1034
Eco47I	GGWCC	6 cut(s)	174, 250, 332, 540, 631, 933
Eco53kI	GAGCTC	1 cut(s)	1085
Eco57I	CTGAAG	3 cut(s)	68, 1300, 1749
Eco88I	CYCGRG	3 cut(s)	311, 906, 1742
EcoICRI	GAGCTC	1 cut(s)	1085
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	3 cut(s)	567, 627, 1643
EcoT14I	CCWWGG	4 cut(s)	879, 936, 1175, 1574
EcoT38I	GRGCYC	3 cut(s)	270, 695, 1087
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
ErhI	CCWWGG	4 cut(s)	879, 936, 1175, 1574
Esp3I	CGTCTC	3 cut(s)	364, 373, 1754
FaqI	GGGAC	3 cut(s)	263, 476, 1519
FauI	CCCGC	3 cut(s)	343, 509, 1414
FauNDI	CATATG	1 cut(s)	1708
FbaI	TGATCA	1 cut(s)	942
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	9 cut(s)	31, 34, 37, 430, 483, 522, 817, 1077, 1239
FokI	GGATG	5 cut(s)	19, 479, 899, 1388, 1808
FriOI	GRGCYC	3 cut(s)	270, 695, 1087
Fsp4HI	GCNGC	9 cut(s)	31, 34, 37, 430, 483, 522, 817, 1077, 1239
FspBI	CTAG	3 cut(s)	968, 1101, 1830
GlaI	GCGC	5 cut(s)	129, 210, 286, 531, 701
GluI	GCNGC	9 cut(s)	31, 34, 37, 430, 483, 522, 817, 1077, 1239
GsaI	CCCAGC	1 cut(s)	112
GsuI	CTGGAG	2 cut(s)	1101, 1194
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	6 cut(s)	317, 473, 884, 1061, 1133, 1814
HapII	CCGG	9 cut(s)	27, 89, 133, 143, 288, 330, 363, 1135, 1362
HgaI	GACGC	4 cut(s)	244, 355, 875, 1025
HhaI	GCGC	5 cut(s)	130, 211, 287, 532, 702
Hin1I	GRCGYC	3 cut(s)	285, 366, 867
Hin6I	GCGC	5 cut(s)	128, 209, 285, 530, 700
HinP1I	GCGC	5 cut(s)	128, 209, 285, 530, 700
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	1550
HpaII	CCGG	9 cut(s)	27, 89, 133, 143, 288, 330, 363, 1135, 1362
HphI	GGTGA	6 cut(s)	214, 544, 757, 937, 952, 1255
Hpy166II	GTNNAC	6 cut(s)	138, 540, 601, 727, 1015, 1678
Hpy188I	TCNGA	5 cut(s)	181, 272, 590, 613, 1729
Hpy188III	TCNNGA	5 cut(s)	103, 412, 500, 679, 908
Hpy8I	GTNNAC	6 cut(s)	138, 540, 601, 727, 1015, 1678
Hpy99I	CGWCG	5 cut(s)	344, 359, 413, 716, 1118
HpyAV	CCTTC	6 cut(s)	199, 506, 1298, 1593, 1759, 1766
HpyCH4III	ACNGT	5 cut(s)	598, 605, 1045, 1401, 1663
HpyCH4IV	ACGT	4 cut(s)	354, 711, 729, 855
HpyF3I	CTNAG	3 cut(s)	446, 1672, 1779
HpySE526I	ACGT	4 cut(s)	354, 711, 729, 855
Hsp92I	GRCGYC	3 cut(s)	285, 366, 867
HspAI	GCGC	5 cut(s)	128, 209, 285, 530, 700
KasI	GGCGCC	1 cut(s)	284
KpnI	GGTACC	1 cut(s)	995
Ksp22I	TGATCA	1 cut(s)	942
Kzo9I	GATC	1 cut(s)	942
LmnI	GCTCC	8 cut(s)	135, 213, 272, 454, 698, 1024, 1082, 1492
Lsp1109I	GCAGC	3 cut(s)	494, 1088, 1250
LweI	GCATC	5 cut(s)	828, 1158, 1183, 1366, 1608
MaeI	CTAG	3 cut(s)	968, 1101, 1830
MaeII	ACGT	4 cut(s)	354, 711, 729, 855
MaeIII	GTNAC	6 cut(s)	392, 973, 1349, 1357, 1366, 1480
MalI	GATC	1 cut(s)	944
MbiI	CCGCTC	1 cut(s)	12
MboI	GATC	1 cut(s)	942
MfeI	CAATTG	2 cut(s)	1224, 1428
MhlI	GDGCHC	5 cut(s)	270, 686, 695, 814, 1087
MluCI	AATT	5 cut(s)	115, 1005, 1224, 1275, 1428
Mly113I	GGCGCC	1 cut(s)	285
MlyI	GAGTC	6 cut(s)	104, 133, 303, 1552, 1718, 1778
MmeI	TCCRAC	3 cut(s)	204, 591, 838
MseI	TTAA	2 cut(s)	240, 1834
MslI	CAYNNNNRTG	1 cut(s)	1409
MspA1I	CMGCKG	2 cut(s)	1079, 1247
MspI	CCGG	9 cut(s)	27, 89, 133, 143, 288, 330, 363, 1135, 1362
MspR9I	CCNGG	5 cut(s)	89, 569, 629, 1135, 1645
MunI	CAATTG	2 cut(s)	1224, 1428
MvaI	CCWGG	3 cut(s)	569, 629, 1645
MvnI	CGCG	6 cut(s)	172, 211, 532, 700, 816, 1421
NarI	GGCGCC	1 cut(s)	285
NciI	CCSGG	2 cut(s)	89, 1135
NcoI	CCATGG	4 cut(s)	879, 936, 1175, 1574
NdeI	CATATG	1 cut(s)	1708
NdeII	GATC	1 cut(s)	942
NheI	GCTAGC	1 cut(s)	967
NmeAIII	GCCGAG	1 cut(s)	812
NmuCI	GTSAC	3 cut(s)	973, 1366, 1480
NspI	RCATGY	1 cut(s)	1703
PaeI	GCATGC	1 cut(s)	1703
PaeR7I	CTCGAG	3 cut(s)	311, 906, 1742
PceI	AGGCCT	1 cut(s)	1814
PcsI	WCGNNNNNNNCGW	3 cut(s)	143, 363, 417
PfeI	GAWTC	6 cut(s)	291, 415, 575, 591, 898, 1414
Pfl23II	CGTACG	1 cut(s)	1342
PfoI	TCCNGGA	1 cut(s)	87
PkrI	GCNGC	9 cut(s)	32, 35, 38, 431, 484, 523, 818, 1078, 1240
PleI	GAGTC	6 cut(s)	103, 133, 303, 1551, 1718, 1778
PluTI	GGCGCC	1 cut(s)	288
PpsI	GAGTC	6 cut(s)	103, 133, 303, 1551, 1718, 1778
PpuMI	RGGWCCY	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	1087
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	3 cut(s)	567, 627, 1643
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	3 cut(s)	567, 627, 1643
PspLI	CGTACG	1 cut(s)	1342
PspPI	GGNCC	8 cut(s)	174, 250, 332, 540, 631, 933, 1059, 1132
PspPPI	RGGWCCY	1 cut(s)	250
PspXI	VCTCGAGB	2 cut(s)	311, 1742
PstNI	CAGNNNCTG	2 cut(s)	779, 1826
PvuII	CAGCTG	2 cut(s)	1079, 1247
RsaI	GTAC	4 cut(s)	626, 993, 1207, 1344
RsaNI	GTAC	4 cut(s)	625, 992, 1206, 1343
RseI	CAYNNNNRTG	1 cut(s)	1409
SacI	GAGCTC	1 cut(s)	1087
SalI	GTCGAC	1 cut(s)	136
SaqAI	TTAA	2 cut(s)	240, 1834
SatI	GCNGC	9 cut(s)	31, 34, 37, 430, 483, 522, 817, 1077, 1239
Sau3AI	GATC	1 cut(s)	942
Sau96I	GGNCC	8 cut(s)	174, 250, 332, 540, 631, 933, 1059, 1132
SchI	GAGTC	6 cut(s)	104, 133, 303, 1552, 1718, 1778
ScrFI	CCNGG	5 cut(s)	89, 569, 629, 1135, 1645
SduI	GDGCHC	5 cut(s)	270, 686, 695, 814, 1087
SfaNI	GCATC	5 cut(s)	828, 1158, 1183, 1366, 1608
SfcI	CTRYAG	1 cut(s)	1818
SfoI	GGCGCC	1 cut(s)	286
Sfr274I	CTCGAG	3 cut(s)	311, 906, 1742
SinI	GGWCC	6 cut(s)	174, 250, 332, 540, 631, 933
SlaI	CTCGAG	3 cut(s)	311, 906, 1742
SmiMI	CAYNNNNRTG	1 cut(s)	1409
SmlI	CTYRAG	5 cut(s)	311, 679, 906, 1185, 1742
SmoI	CTYRAG	5 cut(s)	311, 679, 906, 1185, 1742
SpeI	ACTAGT	1 cut(s)	1100
SphI	GCATGC	1 cut(s)	1703
Sse9I	AATT	5 cut(s)	115, 1005, 1224, 1275, 1428
SseBI	AGGCCT	1 cut(s)	1814
SspDI	GGCGCC	1 cut(s)	284
SspMI	CTAG	3 cut(s)	968, 1101, 1830
SstI	GAGCTC	1 cut(s)	1087
StuI	AGGCCT	1 cut(s)	1814
StyD4I	CCNGG	5 cut(s)	87, 567, 627, 1133, 1643
StyI	CCWWGG	4 cut(s)	879, 936, 1175, 1574
TaaI	ACNGT	5 cut(s)	598, 605, 1045, 1401, 1663
TaiI	ACGT	4 cut(s)	357, 714, 732, 858
TasI	AATT	5 cut(s)	115, 1005, 1224, 1275, 1428
TauI	GCSGC	6 cut(s)	33, 36, 39, 432, 524, 819
TfiI	GAWTC	6 cut(s)	291, 415, 575, 591, 898, 1414
Tru1I	TTAA	2 cut(s)	240, 1834
Tru9I	TTAA	2 cut(s)	240, 1834
TscAI	CASTG	3 cut(s)	310, 601, 1128
TseFI	GTSAC	3 cut(s)	973, 1366, 1480
TseI	GCWGC	3 cut(s)	482, 1076, 1238
Tsp45I	GTSAC	3 cut(s)	973, 1366, 1480
TspDTI	ATGAA	4 cut(s)	242, 736, 1300, 1695
TspGWI	ACGGA	2 cut(s)	32, 1388
TspRI	CASTG	3 cut(s)	310, 601, 1128
VpaK11BI	GGWCC	6 cut(s)	174, 250, 332, 540, 631, 933
XapI	RAATTY	1 cut(s)	1275
XceI	RCATGY	1 cut(s)	1703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1572
XhoI	CTCGAG	3 cut(s)	311, 906, 1742
XmiI	GTMKAC	1 cut(s)	137
XspI	CTAG	3 cut(s)	968, 1101, 1830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.