Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002369

Physical Location & Seq

Genomic Coordinates Reverse (-)

40924738 .. 40926553

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1274600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1800 bp

ATGGTGACCGTCGTCACTAGAGGTGGTGGTGGTGGTGGTGCACAAGGCAATGTGATCAAGAGAGGAAGTTGCATATGCAGCAAAGATGATTTCTTGCCGGAGGAGTCGTTCAAGAGCTGGGGAAACTATGTTCATGCGCTGTCCAGCACGAAAACAAGGCTCAAAGACCGGCTTCTTGCGCGGTCCCTGGACCACCAGGAGGTCGAAGAAATTCGTGCACGTAGTCAGAATCAGATGAAGAAAACCCTAAACTGGTGGGATCTCATTTGGTTCGGCATTGGAGCGGTCATGGGGTCGGGGATTTTTGTTCTCACAGGTCAGGAAGCAAGAAATCATGCTGGCCCTGCTATAGTAATCTCTTACTTCATATCCGGCGTTTCAGCAATGCTATCAGTTTTGTGCTACACTGAGTTTGCAGTGGAACTCCCTGTGGCGGGAGGCTCATTTTCTTATCTTAGGGTGGAGCTTGGTGATTTTGTGGCTTATATTGCTGCCGGAAACCTCCTCTTTGAGTATATAATTTCAGGAGCTAGTGTGGCAAGGTCATGGACCTCGTACTTTGCTACATTGTGCAACCACAGCCCCAACGATTTTCGCATCACCGCATCATCCCTTGCCGATAACTTCAACCATTTAGACCCAATCGCGGTTTTTATCTCCATTTTGGTTTGTTTTGGTGCTGCCTTGAGCATGAAGGCTTCGTCTAGATTCAATTGGGTTATGTCTATCACCCATCTGGTGGTCTTGATTTTCATCCTTGTCGCCGGCATGACTAAGGCTGACCCTACTAATTTCACTACAAACTTTGCACCATTTGGTATCCACGGAATCTTGAAAGCTTCAGCTGTTCTCTTCTTTGCGTACGTGGGATTTGACGGTGTAGCAACGTTGGGGGAGGAGACGAAAAACCCTGGCAGAGATATCCCGATTGGGCTGATTGGCTCAATGTTGACTATCATAACAACTTATTGCCTTCTTGCAGCCACATTGTGCCTGATGCAGCCATACAGCCAAATTGATCCTGATGCATCATTCACCGTTGCATTCCAAGCCGCGGGTATGAATTGGGCCAAGTACATTGTTGCACTCGGAGCACTTAAAGGCATGACAACCGTCCTGCTTGCCAACCTTCTTGCCCAAGCTCGTTATTTCACTCACATTGGACGCACCCACATGGCACCTCCATTCCTGGCATCCATCCATCCGAAAACTGGCACGCCTGTGAATGCCACGGTTTTTATGACGGTTCTAAACTCCCTTGTTGCATTCTTCACAAGCCTTGATGTCCTGACAGACCTTCTCTCAATATCAACCCTGTTTATCTTTACACTTGTTGCCCTAGCACTTATTGTAAGGCGATACTACGCTTCTGGTGAAACCTCAACTCCCGACAGAAACAAACTCGCTGTGTTCTTGGTACTGATCGTAGGATCATCAGTTGGTTCTTCTATTTTTTGGGCAGTTAGCAACGGTTGGATTGCCTACACTGTGACAGTCACAATTTGGTTTGTTGCCACATTAGGCCTACAGTTGACTCTCAAACAAGCAAAGAAACCTAAACTTTGGGGGGTGCCATTAGTCCCTTGGTTGCCATCAGCCAGCATTGCCATCAACATCTTCATCTTGGGATCCATCGATGGTGCATCGTACATAAGATTCGGCGTTTGGACGTTGATTTTGCTCGTGTACTATTTGTTCGTGGTGCTGCACGCTTCGTACGACGCAGCTAGGGAGCTTGAAAGAAAGGCAGTTGATGCTAATATGGAGGCTGGGACTAGCAGAATCATTGAATTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

600

Amino Acids

65.13

Weight (kDa)

8.68

Isoelectric Point (pI)

25.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	83 - 459	1e-44	Amino acid permease
AA_permease	PF00324	88 - 497	1.4e-30	Amino acid permease
AA_permease_C	PF13906	522 - 572	6.7e-17	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21120 AT4G21120
fragaria_vesca	FvH4_3g09930 FvH4_3g09940
malus_domestica	MD05G1274600.v1.1 MD05G1274700.v1.1 MD05G1274900.v1.1 MD10G1254300.v1.1
prunus_persica	Prupe.4G089000_v2.0.a1 Prupe.4G089100_v2.0.a1
pyrus_communis	pycom05g25610 pycom05g25630 pycom10g21000
rosa_chinensis	RchiOBHm_Chr5g0015621 RchiOBHm_Chr5g0015661 RchiOBHm_Chr5g0015691 RchiOBHm_Chr5g0015791
rosa_laevigata	RLG00000032214 RLG00000032217 RLG00000032219
rosa_multiflora	Rmu_sc0000843.1_g000004 Rmu_sc0000843.1_g000008 Rmu_sc0003230.1_g000003 Rmu_sc0003230.1_g000005
rosa_roxburghii	Rroxscaffold_1G00060830
rosa_rugosa	Rorug01G0078300 Rorug05G0029000 Rorug05G0029100
rosa_samantha	Rh5AG122300 Rh5AG122400 Rh5AG122600 Rh5BG120900 Rh5BG121200 Rh5BG121700 Rh5CG131300 Rh5CG131900 Rh5CG132800 Rh5DG119900 Rh5DG120600
rosa_wichuraiana	Rw5G010550 Rw5G010560 Rw5G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1177, 1570
AccB7I	CCANNNNNTGG	1 cut(s)	739
AccBSI	CCGCTC	1 cut(s)	284
AccII	CGCG	3 cut(s)	181, 647, 1055
AciI	CCGC	7 cut(s)	181, 284, 434, 603, 647, 1053, 1055
AclI	AACGTT	1 cut(s)	887
AclWI	GGATC	5 cut(s)	267, 1013, 1438, 1623, 1636
AcsI	RAATTY	2 cut(s)	210, 1790
AcuI	CTGAAG	1 cut(s)	825
AdeI	CACNNNGTG	1 cut(s)	990
AfaI	GTAC	7 cut(s)	557, 863, 1076, 1419, 1649, 1688, 1718
AfiI	CCNNNNNNNGG	8 cut(s)	199, 252, 433, 434, 646, 739, 1054, 1211
AgsI	TTSAA	6 cut(s)	112, 628, 712, 835, 1739, 1790
AjnI	CCWGG	4 cut(s)	186, 195, 910, 1188
AleI	CACNNNNGTG	1 cut(s)	1220
AloI	GAACNNNNNNTCC	4 cut(s)	92, 114, 124, 146
AluBI	AGCT	8 cut(s)	117, 466, 530, 839, 845, 1142, 1727, 1735
AluI	AGCT	8 cut(s)	117, 466, 530, 839, 845, 1142, 1727, 1735
Alw21I	GWGCWC	3 cut(s)	43, 220, 1096
Alw26I	GTCTC	1 cut(s)	893
Alw44I	GTGCAC	2 cut(s)	39, 216
AlwI	GGATC	5 cut(s)	267, 1013, 1438, 1623, 1636
AoxI	GGCC	3 cut(s)	340, 1068, 1522
ApaLI	GTGCAC	2 cut(s)	39, 216
ApeKI	GCWGC	7 cut(s)	78, 491, 680, 980, 1000, 1705, 1724
ApoI	RAATTY	2 cut(s)	210, 1790
ArsI	GACNNNNNNTTYG	2 cut(s)	1660, 1692
Asp700I	GAANNNNTTC	1 cut(s)	210
AspLEI	GCGC	2 cut(s)	139, 181
AspS9I	GGNCC	5 cut(s)	183, 190, 341, 549, 1068
AsuHPI	GGTGA	6 cut(s)	16, 482, 592, 721, 1027, 1385
AvaII	GGWCC	3 cut(s)	183, 190, 549
BaeGI	GKGCMC	2 cut(s)	43, 220
BamHI	GGATCC	1 cut(s)	1628
BanI	GGYRCC	2 cut(s)	1177, 1570
BauI	CACGAG	1 cut(s)	1682
Bbv12I	GWGCWC	3 cut(s)	43, 220, 1096
BbvI	GCAGC	7 cut(s)	90, 478, 667, 992, 1012, 1692, 1736
BccI	CCATC	7 cut(s)	741, 1205, 1209, 1600, 1616, 1631, 1640
BciT130I	CCWGG	4 cut(s)	188, 197, 912, 1190
BciVI	GTATCC	1 cut(s)	830
BclI	TGATCA	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	893
BfaI	CTAG	6 cut(s)	18, 531, 705, 1340, 1728, 1776
BfmI	CTRYAG	2 cut(s)	348, 1526
BfuI	GTATCC	1 cut(s)	830
BisI	GCNGC	8 cut(s)	79, 492, 681, 981, 1001, 1053, 1706, 1725
BlsI	GCNGC	8 cut(s)	80, 493, 682, 982, 1002, 1054, 1707, 1726
Bme1390I	CCNGG	4 cut(s)	188, 197, 912, 1190
Bme18I	GGWCC	3 cut(s)	183, 190, 549
BmgT120I	GGNCC	5 cut(s)	183, 190, 341, 549, 1068
BmiI	GGNNCC	4 cut(s)	185, 1179, 1572, 1630
BmrFI	CCNGG	4 cut(s)	188, 197, 912, 1190
BmsI	GCATC	8 cut(s)	606, 614, 987, 1015, 1037, 1202, 1652, 1744
BoxI	GACNNNNGTC	2 cut(s)	11, 1112
BpuEI	CTTGAG	1 cut(s)	706
Bsa29I	ATCGAT	1 cut(s)	1635
BsaAI	YACGTR	2 cut(s)	221, 865
BsaBI	GATNNNNATC	1 cut(s)	752
BsaJI	CCNNGG	6 cut(s)	186, 823, 910, 1053, 1230, 1583
BsaXI	ACNNNNNCTCC	6 cut(s)	92, 122, 519, 549, 1369, 1399
Bsc4I	CCNNNNNNNGG	8 cut(s)	199, 252, 433, 434, 646, 739, 1054, 1211
Bse118I	RCCGGY	2 cut(s)	168, 764
Bse1I	ACTGG	2 cut(s)	257, 1216
Bse3DI	GCAATG	3 cut(s)	55, 390, 1602
Bse8I	GATNNNNATC	1 cut(s)	752
BseBI	CCWGG	4 cut(s)	188, 197, 912, 1190
BseCI	ATCGAT	1 cut(s)	1635
BseDI	CCNNGG	6 cut(s)	186, 823, 910, 1053, 1230, 1583
BseGI	GGATG	5 cut(s)	608, 753, 1193, 1197, 1201
BseJI	GATNNNNATC	1 cut(s)	752
BseLI	CCNNNNNNNGG	8 cut(s)	199, 252, 433, 434, 646, 739, 1054, 1211
BseMI	GCAATG	3 cut(s)	55, 390, 1602
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	257, 1216
BseRI	GAGGAG	3 cut(s)	116, 494, 911
BseSI	GKGCMC	2 cut(s)	43, 220
BseXI	GCAGC	7 cut(s)	90, 478, 667, 992, 1012, 1692, 1736
BseYI	CCCAGC	2 cut(s)	117, 1769
BsgI	GTGCAG	1 cut(s)	1691
Bsh1236I	CGCG	3 cut(s)	181, 647, 1055
BshFI	GGCC	3 cut(s)	342, 1070, 1524
BshNI	GGYRCC	2 cut(s)	1177, 1570
BshVI	ATCGAT	1 cut(s)	1635
BsiHKAI	GWGCWC	3 cut(s)	43, 220, 1096
BsiSI	CCGG	5 cut(s)	98, 169, 372, 495, 765
BsiWI	CGTACG	2 cut(s)	861, 1716
BslFI	GGGAC	3 cut(s)	169, 1565, 1786
BslI	CCNNNNNNNGG	8 cut(s)	199, 252, 433, 434, 646, 739, 1054, 1211
BsmAI	GTCTC	1 cut(s)	893
BsmBI	CGTCTC	1 cut(s)	893
BsmFI	GGGAC	3 cut(s)	169, 1565, 1786
BsmI	GAATGC	3 cut(s)	1043, 1231, 1265
BsnI	GGCC	3 cut(s)	342, 1070, 1524
Bsp1286I	GDGCHC	3 cut(s)	43, 220, 1096
Bsp143I	GATC	6 cut(s)	54, 259, 1018, 1422, 1430, 1628
BspACI	CCGC	7 cut(s)	181, 284, 434, 603, 647, 1053, 1055
BspANI	GGCC	3 cut(s)	342, 1070, 1524
BspCNI	CTCAG	1 cut(s)	400
BspDI	ATCGAT	1 cut(s)	1635
BspFNI	CGCG	3 cut(s)	181, 647, 1055
BspLI	GGNNCC	4 cut(s)	185, 1179, 1572, 1630
BspPI	GGATC	5 cut(s)	267, 1013, 1438, 1623, 1636
BspT107I	GGYRCC	2 cut(s)	1177, 1570
BsrBI	CCGCTC	1 cut(s)	284
BsrDI	GCAATG	3 cut(s)	55, 390, 1602
BsrFI	RCCGGY	2 cut(s)	168, 764
BsrI	ACTGG	2 cut(s)	257, 1216
BssAI	RCCGGY	2 cut(s)	168, 764
BssECI	CCNNGG	6 cut(s)	186, 823, 910, 1053, 1230, 1583
BssMI	GATC	6 cut(s)	54, 259, 1018, 1422, 1430, 1628
BssSI	CACGAG	1 cut(s)	1682
BssT1I	CCWWGG	1 cut(s)	1583
Bst2BI	CACGAG	1 cut(s)	1682
Bst2UI	CCWGG	4 cut(s)	188, 197, 912, 1190
Bst6I	CTCTTC	1 cut(s)	857
BstAPI	GCANNNNNTGC	1 cut(s)	1754
BstBAI	YACGTR	2 cut(s)	221, 865
BstC8I	GCNNGC	6 cut(s)	340, 766, 1122, 1217, 1600, 1710
BstDEI	CTNAG	3 cut(s)	408, 455, 774
BstDSI	CCRYGG	3 cut(s)	823, 1053, 1230
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	5 cut(s)	608, 753, 1193, 1197, 1201
BstFNI	CGCG	3 cut(s)	181, 647, 1055
BstHHI	GCGC	2 cut(s)	139, 181
BstKTI	GATC	6 cut(s)	57, 262, 1021, 1425, 1433, 1631
BstMAI	GTCTC	1 cut(s)	893
BstMBI	GATC	6 cut(s)	54, 259, 1018, 1422, 1430, 1628
BstNI	CCWGG	4 cut(s)	188, 197, 912, 1190
BstPAI	GACNNNNGTC	2 cut(s)	11, 1112
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	4 cut(s)	186, 195, 910, 1188
BstSFI	CTRYAG	2 cut(s)	348, 1526
BstSLI	GKGCMC	2 cut(s)	43, 220
BstUI	CGCG	3 cut(s)	181, 647, 1055
BstV1I	GCAGC	7 cut(s)	90, 478, 667, 992, 1012, 1692, 1736
BstX2I	RGATCY	2 cut(s)	259, 1628
BstYI	RGATCY	2 cut(s)	259, 1628
Bsu15I	ATCGAT	1 cut(s)	1635
BsuI	GTATCC	1 cut(s)	830
BsuRI	GGCC	3 cut(s)	342, 1070, 1524
BsuTUI	ATCGAT	1 cut(s)	1635
BtgI	CCRYGG	3 cut(s)	823, 1053, 1230
BtsCI	GGATG	5 cut(s)	608, 753, 1193, 1197, 1201
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	3 cut(s)	405, 423, 1485
Cac8I	GCNNGC	6 cut(s)	340, 766, 1122, 1217, 1600, 1710
CfoI	GCGC	2 cut(s)	139, 181
Cfr10I	RCCGGY	2 cut(s)	168, 764
Cfr13I	GGNCC	5 cut(s)	183, 190, 341, 549, 1068
Cfr42I	CCGCGG	1 cut(s)	1056
ClaI	ATCGAT	1 cut(s)	1635
CseI	GACGC	2 cut(s)	1173, 1730
Csp6I	GTAC	7 cut(s)	556, 862, 1075, 1418, 1648, 1687, 1717
CviAII	CATG	8 cut(s)	134, 289, 335, 546, 691, 769, 1105, 1174
CviQI	GTAC	7 cut(s)	556, 862, 1075, 1418, 1648, 1687, 1717
DdeI	CTNAG	3 cut(s)	408, 455, 774
DpnI	GATC	6 cut(s)	56, 261, 1020, 1424, 1432, 1630
DpnII	GATC	6 cut(s)	54, 259, 1018, 1422, 1430, 1628
DraIII	CACNNNGTG	1 cut(s)	990
Eam1104I	CTCTTC	1 cut(s)	857
EarI	CTCTTC	1 cut(s)	857
Eco130I	CCWWGG	1 cut(s)	1583
Eco147I	AGGCCT	1 cut(s)	1524
Eco32I	GATATC	1 cut(s)	922
Eco47I	GGWCC	3 cut(s)	183, 190, 549
Eco57I	CTGAAG	1 cut(s)	825
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	4 cut(s)	186, 195, 910, 1188
EcoRV	GATATC	1 cut(s)	922
EcoT14I	CCWWGG	1 cut(s)	1583
EcoT22I	ATGCAT	1 cut(s)	1030
ErhI	CCWWGG	1 cut(s)	1583
Esp3I	CGTCTC	1 cut(s)	893
FaeI	CATG	8 cut(s)	137, 292, 338, 549, 694, 772, 1108, 1177
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FaqI	GGGAC	3 cut(s)	169, 1565, 1786
FatI	CATG	8 cut(s)	133, 288, 334, 545, 690, 768, 1104, 1173
FauI	CCCGC	2 cut(s)	427, 1048
FauNDI	CATATG	1 cut(s)	74
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	8 cut(s)	79, 492, 681, 981, 1001, 1053, 1706, 1725
FokI	GGATG	5 cut(s)	595, 740, 1180, 1184, 1188
Fsp4HI	GCNGC	8 cut(s)	79, 492, 681, 981, 1001, 1053, 1706, 1725
FspBI	CTAG	6 cut(s)	18, 531, 705, 1340, 1728, 1776
GlaI	GCGC	2 cut(s)	138, 180
GluI	GCNGC	8 cut(s)	79, 492, 681, 981, 1001, 1053, 1706, 1725
GsaI	CCCAGC	2 cut(s)	121, 1773
HaeIII	GGCC	3 cut(s)	342, 1070, 1524
HapII	CCGG	5 cut(s)	98, 169, 372, 495, 765
HgaI	GACGC	2 cut(s)	1173, 1730
HhaI	GCGC	2 cut(s)	139, 181
Hin1II	CATG	8 cut(s)	137, 292, 338, 549, 694, 772, 1108, 1177
Hin6I	GCGC	2 cut(s)	137, 179
HinP1I	GCGC	2 cut(s)	137, 179
HincII	GTYRAC	2 cut(s)	951, 1533
HindII	GTYRAC	2 cut(s)	951, 1533
HindIII	AAGCTT	1 cut(s)	837
HinfI	GANTC	7 cut(s)	104, 229, 708, 828, 1534, 1656, 1782
HpaII	CCGG	5 cut(s)	98, 169, 372, 495, 765
HphI	GGTGA	6 cut(s)	16, 482, 592, 721, 1027, 1385
Hpy166II	GTNNAC	5 cut(s)	41, 218, 951, 1533, 1687
Hpy188I	TCNGA	4 cut(s)	228, 234, 1091, 1206
Hpy8I	GTNNAC	5 cut(s)	41, 218, 951, 1533, 1687
Hpy99I	CGWCG	2 cut(s)	14, 1724
HpyAV	CCTTC	4 cut(s)	688, 983, 1139, 1307
HpyCH4IV	ACGT	4 cut(s)	220, 864, 887, 1670
HpyF3I	CTNAG	3 cut(s)	408, 455, 774
HpySE526I	ACGT	4 cut(s)	220, 864, 887, 1670
Hsp92II	CATG	8 cut(s)	137, 292, 338, 549, 694, 772, 1108, 1177
HspAI	GCGC	2 cut(s)	137, 179
KroI	GCCGGC	1 cut(s)	764
KroNI	GCCGGC	1 cut(s)	766
Ksp22I	TGATCA	1 cut(s)	54
KspI	CCGCGG	1 cut(s)	1056
Kzo9I	GATC	6 cut(s)	54, 259, 1018, 1422, 1430, 1628
LmnI	GCTCC	5 cut(s)	281, 463, 527, 1091, 1732
Lsp1109I	GCAGC	7 cut(s)	90, 478, 667, 992, 1012, 1692, 1736
LweI	GCATC	8 cut(s)	606, 614, 987, 1015, 1037, 1202, 1652, 1744
MaeI	CTAG	6 cut(s)	18, 531, 705, 1340, 1728, 1776
MaeII	ACGT	4 cut(s)	220, 864, 887, 1670
MaeIII	GTNAC	4 cut(s)	4, 13, 1489, 1495
MalI	GATC	6 cut(s)	56, 261, 1020, 1424, 1432, 1630
MbiI	CCGCTC	1 cut(s)	284
MboI	GATC	6 cut(s)	54, 259, 1018, 1422, 1430, 1628
MboII	GAAGA	6 cut(s)	218, 250, 844, 1261, 1437, 1609
MfeI	CAATTG	1 cut(s)	712
MflI	RGATCY	2 cut(s)	259, 1628
MhlI	GDGCHC	3 cut(s)	43, 220, 1096
MluCI	AATT	8 cut(s)	210, 519, 712, 790, 1014, 1063, 1500, 1790
MlyI	GAGTC	2 cut(s)	113, 1528
MmeI	TCCRAC	1 cut(s)	1454
Mph1103I	ATGCAT	1 cut(s)	1030
MroNI	GCCGGC	1 cut(s)	764
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	2 cut(s)	1098, 1794
MslI	CAYNNNNRTG	2 cut(s)	1172, 1220
MspA1I	CMGCKG	2 cut(s)	845, 1055
MspI	CCGG	5 cut(s)	98, 169, 372, 495, 765
MspR9I	CCNGG	4 cut(s)	188, 197, 912, 1190
MunI	CAATTG	1 cut(s)	712
Mva1269I	GAATGC	3 cut(s)	1043, 1231, 1265
MvaI	CCWGG	4 cut(s)	188, 197, 912, 1190
MvnI	CGCG	3 cut(s)	181, 647, 1055
NaeI	GCCGGC	1 cut(s)	766
NdeI	CATATG	1 cut(s)	74
NdeII	GATC	6 cut(s)	54, 259, 1018, 1422, 1430, 1628
NgoMIV	GCCGGC	1 cut(s)	764
NlaIII	CATG	8 cut(s)	137, 292, 338, 549, 694, 772, 1108, 1177
NlaIV	GGNNCC	4 cut(s)	185, 1179, 1572, 1630
NmuCI	GTSAC	4 cut(s)	4, 13, 1489, 1495
NsiI	ATGCAT	1 cut(s)	1030
OliI	CACNNNNGTG	1 cut(s)	1220
PceI	AGGCCT	1 cut(s)	1524
PcsI	WCGNNNNNNNCGW	1 cut(s)	1716
PctI	GAATGC	3 cut(s)	1043, 1231, 1265
PdiI	GCCGGC	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	5 cut(s)	229, 708, 828, 1656, 1782
Pfl23II	CGTACG	2 cut(s)	861, 1716
PflMI	CCANNNNNTGG	1 cut(s)	739
PkrI	GCNGC	8 cut(s)	80, 493, 682, 982, 1002, 1054, 1707, 1726
PleI	GAGTC	2 cut(s)	112, 1528
PpsI	GAGTC	2 cut(s)	112, 1528
Ppu21I	YACGTR	2 cut(s)	221, 865
PshAI	GACNNNNGTC	2 cut(s)	11, 1112
Psp1406I	AACGTT	1 cut(s)	887
Psp6I	CCWGG	4 cut(s)	186, 195, 910, 1188
PspEI	GGTNACC	1 cut(s)	4
PspFI	CCCAGC	2 cut(s)	117, 1769
PspGI	CCWGG	4 cut(s)	186, 195, 910, 1188
PspLI	CGTACG	2 cut(s)	861, 1716
PspN4I	GGNNCC	4 cut(s)	185, 1179, 1572, 1630
PspPI	GGNCC	5 cut(s)	183, 190, 341, 549, 1068
PsrI	GAACNNNNNNTAC	2 cut(s)	1679, 1711
PsuI	RGATCY	2 cut(s)	259, 1628
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	7 cut(s)	557, 863, 1076, 1419, 1649, 1688, 1718
RsaNI	GTAC	7 cut(s)	556, 862, 1075, 1418, 1648, 1687, 1717
RseI	CAYNNNNRTG	2 cut(s)	1172, 1220
SacII	CCGCGG	1 cut(s)	1056
SaqAI	TTAA	2 cut(s)	1098, 1794
SatI	GCNGC	8 cut(s)	79, 492, 681, 981, 1001, 1053, 1706, 1725
Sau3AI	GATC	6 cut(s)	54, 259, 1018, 1422, 1430, 1628
Sau96I	GGNCC	5 cut(s)	183, 190, 341, 549, 1068
SchI	GAGTC	2 cut(s)	113, 1528
ScrFI	CCNGG	4 cut(s)	188, 197, 912, 1190
SduI	GDGCHC	3 cut(s)	43, 220, 1096
SfaNI	GCATC	8 cut(s)	606, 614, 987, 1015, 1037, 1202, 1652, 1744
SfcI	CTRYAG	2 cut(s)	348, 1526
Sfr303I	CCGCGG	1 cut(s)	1056
SgrBI	CCGCGG	1 cut(s)	1056
SinI	GGWCC	3 cut(s)	183, 190, 549
SmiMI	CAYNNNNRTG	2 cut(s)	1172, 1220
SmlI	CTYRAG	1 cut(s)	685
SmoI	CTYRAG	1 cut(s)	685
Sse9I	AATT	8 cut(s)	210, 519, 712, 790, 1014, 1063, 1500, 1790
SseBI	AGGCCT	1 cut(s)	1524
SsiI	CCGC	7 cut(s)	181, 284, 434, 603, 647, 1053, 1055
SspMI	CTAG	6 cut(s)	18, 531, 705, 1340, 1728, 1776
StuI	AGGCCT	1 cut(s)	1524
StyD4I	CCNGG	4 cut(s)	186, 195, 910, 1188
StyI	CCWWGG	1 cut(s)	1583
TaiI	ACGT	4 cut(s)	223, 867, 890, 1673
TaqI	TCGA	2 cut(s)	204, 1635
TasI	AATT	8 cut(s)	210, 519, 712, 790, 1014, 1063, 1500, 1790
TatI	WGTACW	2 cut(s)	1074, 1686
TauI	GCSGC	1 cut(s)	1055
TfiI	GAWTC	5 cut(s)	229, 708, 828, 1656, 1782
Tru1I	TTAA	2 cut(s)	1098, 1794
Tru9I	TTAA	2 cut(s)	1098, 1794
TscAI	CASTG	3 cut(s)	412, 423, 1492
TseFI	GTSAC	4 cut(s)	4, 13, 1489, 1495
TseI	GCWGC	7 cut(s)	78, 491, 680, 980, 1000, 1705, 1724
Tsp45I	GTSAC	4 cut(s)	4, 13, 1489, 1495
TspDTI	ATGAA	7 cut(s)	122, 251, 355, 707, 742, 1076, 1609
TspGWI	ACGGA	1 cut(s)	840
TspRI	CASTG	3 cut(s)	412, 423, 1492
Van91I	CCANNNNNTGG	1 cut(s)	739
VneI	GTGCAC	2 cut(s)	39, 216
VpaK11BI	GGWCC	3 cut(s)	183, 190, 549
XapI	RAATTY	2 cut(s)	210, 1790
XbaI	TCTAGA	1 cut(s)	704
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1208, 1581
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	6 cut(s)	18, 531, 705, 1340, 1728, 1776
Zsp2I	ATGCAT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.