Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002369

Physical Location & Seq

Genomic Coordinates Reverse (-)

11112213 .. 11113732

Gene Structure 1520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG132800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAGGCAGGAATTTTCGTGCTCACCGGTGAGGCAGCCAGGAAACTTGTTGGCCCTGCAGTTGTAATCTCTTACTTGATATCAGGTGTTTCGGTATTACTCTCAGTTTTGTGCTACACTAAGTTTGTTGTGGAGCTTCCGGTGGCTGGAGGCTCATTTGCGTATCCTAAAGTGGAGCTTGGTGACTTCATGGCCTATATTGCTGCAGGGAACATTTTATTTGAGTATATAGTAGCCGGTGCTAGTGCATCAAGACATAGTGTAGGGTTTGATGGTGTGGCAACTTTGGCGGAGGGGGTAATTGGCTCAATAGTGATTACCATTGTAACTTATTCTGCTCTTGCAGCGACATTATGTATGATGCAACCTTACAGCCAAATTAACGCAGATGCATCATTCACTGTTGCATTTCAGGCCGCAGGTATGAACTGGGCAAAGTACATTGTTGCATTGGGAGCACTTAAAGGCATGTCCACGGTTCTACTAGCCAACCTCATCGGGCAGGCTCGATACTTCACTCACATCGGAAGAACTCACATGGCGCCACCAATCCTTGCAAGGATCAATGCCAAAACCGGTACCCCGTTGATTGTCAAACAAGCAAAGAAACCTAGACTTTGGGGGGTGCCATTGGTTCCTTGGTTGCCATCGGCTGTTATTGCAGTCAATATCTTCATCCTGGGATCCATTGATGGAGCTTTATACTTGAGATTCGATATTTGGACATTGGTTTTGCTGGTCTACTACATATTTGTGGCACTACATGCTTCATATGATGCAGCTCAGGAGACAAAGAGTATAGCTAATGCTGAAACAAACATGGAGGCTGGAACTAGCAAAACCGCTGAAGCAGGCTGTAAACAATTCAGAGATTGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

293

Amino Acids

31.19

Weight (kDa)

8.58

Isoelectric Point (pI)

25.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	96 - 253	7.6e-06	Amino acid permease
AA_permease_C	PF13906	207 - 257	6e-14	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21120 AT4G21120
fragaria_vesca	FvH4_3g09930 FvH4_3g09940
malus_domestica	MD05G1274600.v1.1 MD05G1274700.v1.1 MD05G1274900.v1.1 MD10G1254300.v1.1
prunus_persica	Prupe.4G089000_v2.0.a1 Prupe.4G089100_v2.0.a1
pyrus_communis	pycom05g25610 pycom05g25630 pycom10g21000
rosa_chinensis	RchiOBHm_Chr5g0015621 RchiOBHm_Chr5g0015661 RchiOBHm_Chr5g0015691 RchiOBHm_Chr5g0015791
rosa_laevigata	RLG00000032214 RLG00000032217 RLG00000032219
rosa_multiflora	Rmu_sc0000843.1_g000004 Rmu_sc0000843.1_g000008 Rmu_sc0003230.1_g000003 Rmu_sc0003230.1_g000005
rosa_roxburghii	Rroxscaffold_1G00060830
rosa_rugosa	Rorug01G0078300 Rorug05G0029000 Rorug05G0029100
rosa_samantha	Rh5AG122300 Rh5AG122400 Rh5AG122600 Rh5BG120900 Rh5BG121200 Rh5BG121700 Rh5CG131300 Rh5CG131900 Rh5CG132800 Rh5DG119900 Rh5DG120600
rosa_wichuraiana	Rw5G010550 Rw5G010560 Rw5G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	410
Acc65I	GGTACC	1 cut(s)	578
AccB1I	GGYRCC	3 cut(s)	541, 578, 625
AccI	GTMKAC	1 cut(s)	741
AciI	CCGC	3 cut(s)	290, 417, 843
AclWI	GGATC	3 cut(s)	569, 678, 691
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	867
AcyI	GRCGYC	1 cut(s)	542
AfaI	GTAC	2 cut(s)	440, 580
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgeI	ACCGGT	2 cut(s)	26, 575
AjnI	CCWGG	2 cut(s)	38, 678
AluBI	AGCT	5 cut(s)	136, 178, 698, 782, 803
AluI	AGCT	5 cut(s)	136, 178, 698, 782, 803
Alw21I	GWGCWC	2 cut(s)	24, 460
Alw26I	GTCTC	1 cut(s)	782
AlwI	GGATC	3 cut(s)	569, 678, 691
AoxI	GGCC	3 cut(s)	52, 192, 414
ApeKI	GCWGC	4 cut(s)	35, 203, 344, 779
ApoI	RAATTY	1 cut(s)	12
ArsI	GACNNNNNNTTYG	2 cut(s)	715, 747
AsiGI	ACCGGT	2 cut(s)	26, 575
Asp718I	GGTACC	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	3 cut(s)	16, 41, 194
BamHI	GGATCC	1 cut(s)	683
BanI	GGYRCC	3 cut(s)	541, 578, 625
Bbv12I	GWGCWC	2 cut(s)	24, 460
BbvI	GCAGC	4 cut(s)	47, 190, 356, 791
BccI	CCATC	3 cut(s)	266, 655, 686
BciT130I	CCWGG	2 cut(s)	40, 680
BciVI	GTATCC	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	782
BfaI	CTAG	4 cut(s)	243, 485, 612, 834
BfmI	CTRYAG	2 cut(s)	57, 204
BfoI	RGCGCY	1 cut(s)	545
BfuAI	ACCTGC	1 cut(s)	410
BfuI	GTATCC	1 cut(s)	174
BisI	GCNGC	5 cut(s)	36, 204, 345, 417, 780
BlsI	GCNGC	5 cut(s)	37, 205, 346, 418, 781
Bme1390I	CCNGG	2 cut(s)	40, 680
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	5 cut(s)	543, 580, 627, 636, 685
BmrFI	CCNGG	2 cut(s)	40, 680
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	5 cut(s)	257, 351, 379, 401, 766
BmuI	ACTGGG	1 cut(s)	439
BpmI	CTGGAG	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	783
BpuEI	CTTGAG	1 cut(s)	727
BsaHI	GRCGYC	1 cut(s)	542
BsaJI	CCNNGG	3 cut(s)	474, 638, 679
BsaWI	WCCGGW	3 cut(s)	26, 139, 575
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	3 cut(s)	26, 236, 575
Bse1I	ACTGG	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	40, 680
BseDI	CCNNGG	3 cut(s)	474, 638, 679
BseGI	GGATG	1 cut(s)	675
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	2 cut(s)	117, 797
BseNI	ACTGG	1 cut(s)	434
BseXI	GCAGC	4 cut(s)	47, 190, 356, 791
BshFI	GGCC	3 cut(s)	54, 194, 416
BshNI	GGYRCC	3 cut(s)	541, 578, 625
BshTI	ACCGGT	2 cut(s)	26, 575
BsiHKAI	GWGCWC	2 cut(s)	24, 460
BsiSI	CCGG	4 cut(s)	27, 140, 237, 576
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	782
BsnI	GGCC	3 cut(s)	54, 194, 416
Bsp1286I	GDGCHC	2 cut(s)	24, 460
Bsp143I	GATC	2 cut(s)	561, 683
BspACI	CCGC	3 cut(s)	290, 417, 843
BspANI	GGCC	3 cut(s)	54, 194, 416
BspCNI	CTCAG	2 cut(s)	116, 796
BspLI	GGNNCC	5 cut(s)	543, 580, 627, 636, 685
BspMAI	CTGCAG	2 cut(s)	61, 208
BspMI	ACCTGC	1 cut(s)	410
BspPI	GGATC	3 cut(s)	569, 678, 691
BspT107I	GGYRCC	3 cut(s)	541, 578, 625
BsrFI	RCCGGY	3 cut(s)	26, 236, 575
BsrI	ACTGG	1 cut(s)	434
BssAI	RCCGGY	3 cut(s)	26, 236, 575
BssECI	CCNNGG	3 cut(s)	474, 638, 679
BssMI	GATC	2 cut(s)	561, 683
BssNI	GRCGYC	1 cut(s)	542
BssT1I	CCWWGG	1 cut(s)	638
Bst2UI	CCWGG	2 cut(s)	40, 680
Bst4CI	ACNGT	2 cut(s)	403, 478
BstACI	GRCGYC	1 cut(s)	542
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstC8I	GCNNGC	2 cut(s)	504, 853
BstDEI	CTNAG	3 cut(s)	103, 120, 783
BstDSI	CCRYGG	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	675
BstH2I	RGCGCY	1 cut(s)	545
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	2 cut(s)	564, 686
BstMAI	GTCTC	1 cut(s)	782
BstMBI	GATC	2 cut(s)	561, 683
BstMWI	GCNNNNNNNGC	7 cut(s)	200, 287, 344, 413, 455, 659, 764
BstNI	CCWGG	2 cut(s)	40, 680
BstNSI	RCATGY	2 cut(s)	472, 767
BstSCI	CCNGG	2 cut(s)	38, 678
BstSFI	CTRYAG	2 cut(s)	57, 204
BstV1I	GCAGC	4 cut(s)	47, 190, 356, 791
BstX2I	RGATCY	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	683
BsuI	GTATCC	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	54, 194, 416
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	675
BtsIMutI	CAGTG	1 cut(s)	399
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	2 cut(s)	504, 853
CfoI	GCGC	1 cut(s)	544
Cfr10I	RCCGGY	3 cut(s)	26, 236, 575
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	439, 579
CspAI	ACCGGT	2 cut(s)	26, 575
CviAII	CATG	5 cut(s)	190, 469, 538, 764, 820
CviQI	GTAC	2 cut(s)	439, 579
DdeI	CTNAG	3 cut(s)	103, 120, 783
DinI	GGCGCC	1 cut(s)	543
DpnI	GATC	2 cut(s)	563, 685
DpnII	GATC	2 cut(s)	561, 683
EciI	GGCGGA	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	638
Eco32I	GATATC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	867
EcoRII	CCWGG	2 cut(s)	38, 678
EcoRV	GATATC	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	638
EcoT22I	ATGCAT	1 cut(s)	394
EgeI	GGCGCC	1 cut(s)	543
EheI	GGCGCC	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	638
FaeI	CATG	5 cut(s)	193, 472, 541, 767, 823
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FatI	CATG	5 cut(s)	189, 468, 537, 763, 819
FauNDI	CATATG	1 cut(s)	772
FblI	GTMKAC	1 cut(s)	741
Fnu4HI	GCNGC	5 cut(s)	36, 204, 345, 417, 780
FokI	GGATG	1 cut(s)	662
Fsp4HI	GCNGC	5 cut(s)	36, 204, 345, 417, 780
FspBI	CTAG	4 cut(s)	243, 485, 612, 834
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	5 cut(s)	36, 204, 345, 417, 780
GsuI	CTGGAG	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	545
HaeIII	GGCC	3 cut(s)	54, 194, 416
HapII	CCGG	4 cut(s)	27, 140, 237, 576
HhaI	GCGC	1 cut(s)	544
Hin1I	GRCGYC	1 cut(s)	542
Hin1II	CATG	5 cut(s)	193, 472, 541, 767, 823
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HinfI	GANTC	1 cut(s)	711
HpaII	CCGG	4 cut(s)	27, 140, 237, 576
HphI	GGTGA	3 cut(s)	16, 41, 194
Hpy166II	GTNNAC	3 cut(s)	474, 742, 860
Hpy188I	TCNGA	2 cut(s)	527, 869
Hpy188III	TCNNGA	2 cut(s)	252, 785
Hpy8I	GTNNAC	3 cut(s)	474, 742, 860
HpyCH4III	ACNGT	2 cut(s)	403, 478
HpyF10VI	GCNNNNNNNGC	7 cut(s)	200, 287, 344, 413, 455, 659, 764
HpyF3I	CTNAG	3 cut(s)	103, 120, 783
Hsp92I	GRCGYC	1 cut(s)	542
Hsp92II	CATG	5 cut(s)	193, 472, 541, 767, 823
HspAI	GCGC	1 cut(s)	542
KasI	GGCGCC	1 cut(s)	541
KpnI	GGTACC	1 cut(s)	582
Kzo9I	GATC	2 cut(s)	561, 683
LmnI	GCTCC	4 cut(s)	133, 175, 455, 695
Lsp1109I	GCAGC	4 cut(s)	47, 190, 356, 791
LweI	GCATC	5 cut(s)	257, 351, 379, 401, 766
MaeI	CTAG	4 cut(s)	243, 485, 612, 834
MaeIII	GTNAC	2 cut(s)	182, 325
MalI	GATC	2 cut(s)	563, 685
MboI	GATC	2 cut(s)	561, 683
MboII	GAAGA	2 cut(s)	540, 664
MflI	RGATCY	1 cut(s)	683
MhlI	GDGCHC	2 cut(s)	24, 460
MluCI	AATT	4 cut(s)	12, 300, 378, 863
Mly113I	GGCGCC	1 cut(s)	542
MnlI	CCTC	5 cut(s)	25, 143, 286, 503, 817
Mph1103I	ATGCAT	1 cut(s)	394
MseI	TTAA	2 cut(s)	381, 462
MslI	CAYNNNNRTG	1 cut(s)	752
MspA1I	CMGCKG	1 cut(s)	845
MspI	CCGG	4 cut(s)	27, 140, 237, 576
MspR9I	CCNGG	2 cut(s)	40, 680
MvaI	CCWGG	2 cut(s)	40, 680
MwoI	GCNNNNNNNGC	7 cut(s)	200, 287, 344, 413, 455, 659, 764
NarI	GGCGCC	1 cut(s)	542
NdeI	CATATG	1 cut(s)	772
NdeII	GATC	2 cut(s)	561, 683
NlaIII	CATG	5 cut(s)	193, 472, 541, 767, 823
NlaIV	GGNNCC	5 cut(s)	543, 580, 627, 636, 685
NmuCI	GTSAC	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	394
NspI	RCATGY	2 cut(s)	472, 767
PfeI	GAWTC	1 cut(s)	711
PinAI	ACCGGT	2 cut(s)	26, 575
PkrI	GCNGC	5 cut(s)	37, 205, 346, 418, 781
PluTI	GGCGCC	1 cut(s)	545
Psp6I	CCWGG	2 cut(s)	38, 678
PspGI	CCWGG	2 cut(s)	38, 678
PspN4I	GGNNCC	5 cut(s)	543, 580, 627, 636, 685
PspPI	GGNCC	1 cut(s)	53
PstI	CTGCAG	2 cut(s)	61, 208
PsuI	RGATCY	1 cut(s)	683
RsaI	GTAC	2 cut(s)	440, 580
RsaNI	GTAC	2 cut(s)	439, 579
RseI	CAYNNNNRTG	1 cut(s)	752
SaqAI	TTAA	2 cut(s)	381, 462
SatI	GCNGC	5 cut(s)	36, 204, 345, 417, 780
Sau3AI	GATC	2 cut(s)	561, 683
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	40, 680
SduI	GDGCHC	2 cut(s)	24, 460
SfaNI	GCATC	5 cut(s)	257, 351, 379, 401, 766
SfcI	CTRYAG	2 cut(s)	57, 204
SfoI	GGCGCC	1 cut(s)	543
SgrAI	CRCCGGYG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	752
SmlI	CTYRAG	1 cut(s)	706
SmoI	CTYRAG	1 cut(s)	706
Sse9I	AATT	4 cut(s)	12, 300, 378, 863
SsiI	CCGC	3 cut(s)	290, 417, 843
SspDI	GGCGCC	1 cut(s)	541
SspMI	CTAG	4 cut(s)	243, 485, 612, 834
StyD4I	CCNGG	2 cut(s)	38, 678
StyI	CCWWGG	1 cut(s)	638
TaaI	ACNGT	2 cut(s)	403, 478
TaqI	TCGA	2 cut(s)	508, 714
TasI	AATT	4 cut(s)	12, 300, 378, 863
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	1 cut(s)	711
Tru1I	TTAA	2 cut(s)	381, 462
Tru9I	TTAA	2 cut(s)	381, 462
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	4 cut(s)	35, 203, 344, 779
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	4 cut(s)	178, 440, 664, 759
TspRI	CASTG	1 cut(s)	406
XapI	RAATTY	1 cut(s)	12
XceI	RCATGY	2 cut(s)	472, 767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	636
XmiI	GTMKAC	1 cut(s)	741
XspI	CTAG	4 cut(s)	243, 485, 612, 834
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.