Rmu_sc0000843.1_g000004

cationic amino acid transporter

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000843.1
Physical Location & Seq
Forward (+)
7836 .. 9176
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000843.1_g000004.1.cds

Sequence Viewer

Length: 1341 bp
ctggttaatttctcaggcggctcatttgcctacctaagagtggagcttggggacttcgtggcctacattgcagcaggcaacatccttctcgaatatgtcataggcggggcggccgttgcacgttcgtggacctcctacttcacctccctatgcaaccaggacgattccaatgctttccgaatcactgtccacggttggtcggaggactacaagtacctggaccccattgccattggggttatcatctttatctgcatactcgccgtcttgagcacaaagggctcctcgcacctcaactgcgtcgcctccatagtccacgtcatcgtcattctcttcatcatcatagcaggtctcctagcaggtctcaccaaagcagatactgacaactacaaggagtttgccccaaatggtgctcgcggcatcttccaagcctcggcagttctcttctttgcatacgttggatttgacgccgtttcaaccatggccgaagagaccaagaatcctgctcgagacatcccaatagggctggttgggtccatggtgatcaccaccactctttattgcttgctagccgtgacactctgtcttatggtaccgtatcatgtaattgatgagaacgctccattttcaaaagcgtttgagacagttggtatggattgggccaagtatgtggttgcagctggagctttaaaaggcatgactagtgttttgctcgtcggggcagtgggtcaggcccggtatttgacccacattgcccgaacccacatgatgcccccatggtttgctcaagttgatgccaagacaggtactccagtcaatgccacaattgtcatgctcgcagccacagctgtaatcgctttcttcaccagcctcgacattcttgctaaccttctctccatttctacgctattcatcttcagcctcgttgccattgctctgctcgtacgccgttactatgtaaccggcgtgaccacggatgcaaacaggaataagctcatactgtgcattgtaatgatactcgggggtgcaattgccacttctgcttactggggtgtcagccatgattggttagggtattgcgtgacggctcctatttggttcttggggactttggggatttggtttcttgttccgcaagcaaggagtccaaaggtttggggggtgccattggttccatggtttccttcactttcaattggcatcaacattttcttgcttggttcgattgatggtgcttcttttgtcaggtttgcagtatggactgtgattaccttggtttactacattttctttgggttgcatgcttcatatgacacagcaaaggactctgaaactaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

446

Amino Acids

48.3

Weight (kDa)

6.25

Isoelectric Point (pI)

23.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 338, 350
Acc65I GGTACC 1 cut(s) 592
AccB1I GGYRCC 2 cut(s) 592, 1162
AccII CGCG 1 cut(s) 417
AciI CCGC 5 cut(s) 18, 105, 110, 417, 1133
AcoI YGGCCR 2 cut(s) 111, 483
AcuI CTGAAG 1 cut(s) 901
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 4 cut(s) 215, 594, 808, 945
AfiI CCNNNNNNNGG 2 cut(s) 40, 433
AgsI TTSAA 3 cut(s) 477, 630, 1194
AhdI GACNNNNNGTC 1 cut(s) 582
AhlI ACTAGT 1 cut(s) 701
AjiI CACGTC 1 cut(s) 319
AjnI CCWGG 2 cut(s) 156, 216
AleI CACNNNNGTG 1 cut(s) 124
AluBI AGCT 5 cut(s) 46, 680, 686, 848, 994
AluI AGCT 5 cut(s) 46, 680, 686, 848, 994
Alw21I GWGCWC 2 cut(s) 275, 415
Alw26I GTCTC 5 cut(s) 356, 368, 485, 504, 635
AlwNI CAGNNNCTG 1 cut(s) 380
Ama87I CYCGRG 2 cut(s) 507, 1019
AoxI GGCC 5 cut(s) 60, 111, 483, 660, 732
ApeKI GCWGC 3 cut(s) 71, 677, 839
ArsI GACNNNNNNTTYG 2 cut(s) 691, 723
Asp718I GGTACC 1 cut(s) 592
AspS9I GGNCC 5 cut(s) 129, 220, 534, 660, 733
AsuC2I CCSGG 1 cut(s) 736
AsuHPI GGTGA 5 cut(s) 133, 358, 538, 553, 856
AsuNHI GCTAGC 1 cut(s) 568
AvaI CYCGRG 2 cut(s) 507, 1019
AvaII GGWCC 3 cut(s) 129, 220, 534
BaeI ACNNNNGTAYC 2 cut(s) 798, 831
BanI GGYRCC 2 cut(s) 592, 1162
BanII GRGCYC 1 cut(s) 284
Bbv12I GWGCWC 2 cut(s) 275, 415
BbvI GCAGC 3 cut(s) 83, 689, 851
BccI CCATC 1 cut(s) 1223
BceAI ACGGC 6 cut(s) 98, 248, 455, 557, 933, 1101
BcgI CGANNNNNNTGC 4 cut(s) 152, 186, 863, 897
BciT130I CCWGG 2 cut(s) 158, 218
BclI TGATCA 1 cut(s) 543
BcnI CCSGG 1 cut(s) 736
BcoDI GTCTC 5 cut(s) 356, 368, 485, 504, 635
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 3 cut(s) 356, 569, 702
BfuAI ACCTGC 2 cut(s) 338, 350
BisI GCNGC 6 cut(s) 19, 72, 111, 418, 678, 840
BlsI GCNGC 6 cut(s) 20, 73, 112, 419, 679, 841
Bme1390I CCNGG 3 cut(s) 158, 218, 736
Bme18I GGWCC 3 cut(s) 129, 220, 534
BmeRI GACNNNNNGTC 1 cut(s) 582
BmeT110I CYCGRG 2 cut(s) 507, 1019
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 5 cut(s) 129, 220, 534, 660, 733
BmiI GGNNCC 7 cut(s) 222, 283, 535, 594, 1089, 1164, 1173
BmrFI CCNGG 3 cut(s) 158, 218, 736
BmrI ACTGGG 1 cut(s) 1057
BmsI GCATC 5 cut(s) 429, 759, 784, 967, 1209
BmtI GCTAGC 1 cut(s) 572
BmuI ACTGGG 1 cut(s) 1057
BpmI CTGGAG 2 cut(s) 702, 795
BpuEI CTTGAG 2 cut(s) 289, 771
BpuMI CCSGG 1 cut(s) 736
BsaHI GRCGYC 1 cut(s) 468
BsaI GGTCTC 3 cut(s) 356, 368, 485
BsaJI CCNNGG 8 cut(s) 190, 432, 480, 537, 776, 972, 1175, 1272
BsaXI ACNNNNNCTCC 6 cut(s) 128, 158, 793, 823, 878, 908
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 433
Bse118I RCCGGY 1 cut(s) 962
Bse1I ACTGG 2 cut(s) 812, 1052
Bse3DI GCAATG 4 cut(s) 66, 225, 750, 930
BseBI CCWGG 2 cut(s) 158, 218
BseDI CCNNGG 8 cut(s) 190, 432, 480, 537, 776, 972, 1175, 1272
BseGI GGATG 3 cut(s) 81, 513, 982
BseLI CCNNNNNNNGG 2 cut(s) 40, 433
BseMI GCAATG 4 cut(s) 66, 225, 750, 930
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 2 cut(s) 812, 1052
BseRI GAGGAG 1 cut(s) 274
BseX3I CGGCCG 1 cut(s) 111
BseXI GCAGC 3 cut(s) 83, 689, 851
Bsh1236I CGCG 1 cut(s) 417
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 5 cut(s) 62, 113, 485, 662, 734
BshNI GGYRCC 2 cut(s) 592, 1162
BsiEI CGRYCG 1 cut(s) 114
BsiHKAI GWGCWC 2 cut(s) 275, 415
BsiHKCI CYCGRG 2 cut(s) 507, 1019
BsiSI CCGG 2 cut(s) 736, 963
BsiWI CGTACG 1 cut(s) 943
BslFI GGGAC 2 cut(s) 65, 1120
BslI CCNNNNNNNGG 2 cut(s) 40, 433
BsmAI GTCTC 5 cut(s) 356, 368, 485, 504, 635
BsmFI GGGAC 2 cut(s) 65, 1120
BsnI GGCC 5 cut(s) 62, 113, 485, 662, 734
Bso31I GGTCTC 3 cut(s) 356, 368, 485
BsoBI CYCGRG 2 cut(s) 507, 1019
Bsp1286I GDGCHC 3 cut(s) 275, 284, 415
Bsp143I GATC 1 cut(s) 543
Bsp19I CCATGG 4 cut(s) 480, 537, 776, 1175
BspACI CCGC 5 cut(s) 18, 105, 110, 417, 1133
BspANI GGCC 5 cut(s) 62, 113, 485, 662, 734
BspCNI CTCAG 1 cut(s) 26
BspFNI CGCG 1 cut(s) 417
BspLI GGNNCC 7 cut(s) 222, 283, 535, 594, 1089, 1164, 1173
BspMI ACCTGC 2 cut(s) 338, 350
BspOI GCTAGC 1 cut(s) 572
BspT107I GGYRCC 2 cut(s) 592, 1162
BspTNI GGTCTC 3 cut(s) 356, 368, 485
BsrDI GCAATG 4 cut(s) 66, 225, 750, 930
BsrFI RCCGGY 1 cut(s) 962
BsrI ACTGG 2 cut(s) 812, 1052
BssAI RCCGGY 1 cut(s) 962
BssECI CCNNGG 8 cut(s) 190, 432, 480, 537, 776, 972, 1175, 1272
BssMI GATC 1 cut(s) 543
BssNI GRCGYC 1 cut(s) 468
BssT1I CCWWGG 5 cut(s) 480, 537, 776, 1175, 1272
Bst2UI CCWGG 2 cut(s) 158, 218
Bst4CI ACNGT 6 cut(s) 187, 194, 597, 646, 1002, 1264
Bst6I CTCTTC 3 cut(s) 338, 449, 483
BstACI GRCGYC 1 cut(s) 468
BstC8I GCNNGC 7 cut(s) 76, 415, 566, 570, 837, 1137, 1302
BstDEI CTNAG 2 cut(s) 13, 35
BstDSI CCRYGG 6 cut(s) 190, 480, 537, 776, 972, 1175
BstF5I GGATG 3 cut(s) 81, 513, 982
BstFNI CGCG 1 cut(s) 417
BstKTI GATC 1 cut(s) 546
BstMAI GTCTC 5 cut(s) 356, 368, 485, 504, 635
BstMBI GATC 1 cut(s) 543
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 7 cut(s) 68, 116, 279, 683, 845, 854, 1040
BstNI CCWGG 2 cut(s) 158, 218
BstNSI RCATGY 1 cut(s) 1304
BstSCI CCNGG 3 cut(s) 156, 216, 734
BstUI CGCG 1 cut(s) 417
BstV1I GCAGC 3 cut(s) 83, 689, 851
BstXI CCANNNNNNTGG 2 cut(s) 670, 1155
BstZI CGGCCG 1 cut(s) 111
BsuRI GGCC 5 cut(s) 62, 113, 485, 662, 734
BtgI CCRYGG 6 cut(s) 190, 480, 537, 776, 972, 1175
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 3 cut(s) 81, 513, 982
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 2 cut(s) 183, 729
BveI ACCTGC 2 cut(s) 338, 350
Cac8I GCNNGC 7 cut(s) 76, 415, 566, 570, 837, 1137, 1302
CaiI CAGNNNCTG 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 962
Cfr13I GGNCC 5 cut(s) 129, 220, 534, 660, 733
CseI GACGC 2 cut(s) 289, 476
Csp6I GTAC 4 cut(s) 214, 593, 807, 944
CviQI GTAC 4 cut(s) 214, 593, 807, 944
DdeI CTNAG 2 cut(s) 13, 35
DpnI GATC 1 cut(s) 545
DpnII GATC 1 cut(s) 543
DraI TTTAAA 1 cut(s) 690
DriI GACNNNNNGTC 1 cut(s) 582
EaeI YGGCCR 2 cut(s) 111, 483
EagI CGGCCG 1 cut(s) 111
Eam1104I CTCTTC 3 cut(s) 338, 449, 483
Eam1105I GACNNNNNGTC 1 cut(s) 582
EarI CTCTTC 3 cut(s) 338, 449, 483
EclXI CGGCCG 1 cut(s) 111
Eco130I CCWWGG 5 cut(s) 480, 537, 776, 1175, 1272
Eco24I GRGCYC 1 cut(s) 284
Eco31I GGTCTC 3 cut(s) 356, 368, 485
Eco47I GGWCC 3 cut(s) 129, 220, 534
Eco52I CGGCCG 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 901
Eco88I CYCGRG 2 cut(s) 507, 1019
EcoRII CCWGG 2 cut(s) 156, 216
EcoT14I CCWWGG 5 cut(s) 480, 537, 776, 1175, 1272
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 5 cut(s) 480, 537, 776, 1175, 1272
FaqI GGGAC 2 cut(s) 65, 1120
FauI CCCGC 1 cut(s) 98
FauNDI CATATG 1 cut(s) 1309
FbaI TGATCA 1 cut(s) 543
Fnu4HI GCNGC 6 cut(s) 19, 72, 111, 418, 678, 840
FokI GGATG 3 cut(s) 68, 500, 989
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 6 cut(s) 19, 72, 111, 418, 678, 840
FspBI CTAG 3 cut(s) 356, 569, 702
GluI GCNGC 6 cut(s) 19, 72, 111, 418, 678, 840
GsuI CTGGAG 2 cut(s) 702, 795
HaeIII GGCC 5 cut(s) 62, 113, 485, 662, 734
HapII CCGG 2 cut(s) 736, 963
HgaI GACGC 2 cut(s) 289, 476
Hin1I GRCGYC 1 cut(s) 468
HinfI GANTC 5 cut(s) 164, 180, 499, 1144, 1325
HpaII CCGG 2 cut(s) 736, 963
HphI GGTGA 5 cut(s) 133, 358, 538, 553, 856
Hpy166II GTNNAC 4 cut(s) 129, 190, 316, 1279
Hpy188I TCNGA 3 cut(s) 179, 202, 1330
Hpy188III TCNNGA 3 cut(s) 89, 268, 509
Hpy8I GTNNAC 4 cut(s) 129, 190, 316, 1279
Hpy99I CGWCG 2 cut(s) 305, 719
HpyAV CCTTC 3 cut(s) 95, 899, 1194
HpyCH4III ACNGT 6 cut(s) 187, 194, 597, 646, 1002, 1264
HpyCH4IV ACGT 3 cut(s) 121, 318, 456
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 116, 279, 683, 845, 854, 1040
HpyF3I CTNAG 2 cut(s) 13, 35
HpySE526I ACGT 3 cut(s) 121, 318, 456
Hsp92I GRCGYC 1 cut(s) 468
KpnI GGTACC 1 cut(s) 596
Ksp22I TGATCA 1 cut(s) 543
Kzo9I GATC 1 cut(s) 543
LmnI GCTCC 5 cut(s) 43, 287, 625, 683, 1093
Lsp1109I GCAGC 3 cut(s) 83, 689, 851
LweI GCATC 5 cut(s) 429, 759, 784, 967, 1209
MaeI CTAG 3 cut(s) 356, 569, 702
MaeII ACGT 3 cut(s) 121, 318, 456
MaeIII GTNAC 5 cut(s) 574, 950, 958, 967, 1081
MalI GATC 1 cut(s) 545
MboI GATC 1 cut(s) 543
MboII GAAGA 6 cut(s) 325, 415, 436, 500, 853, 907
MfeI CAATTG 3 cut(s) 825, 1029, 1194
MhlI GDGCHC 3 cut(s) 275, 284, 415
MluCI AATT 5 cut(s) 7, 606, 825, 1029, 1194
MlyI GAGTC 2 cut(s) 1153, 1319
MmeI TCCRAC 2 cut(s) 180, 439
MnlI CCTC 9 cut(s) 142, 154, 196, 295, 302, 316, 442, 881, 932
MseI TTAA 2 cut(s) 6, 689
MslI CAYNNNNRTG 2 cut(s) 124, 1010
MspA1I CMGCKG 2 cut(s) 680, 848
MspI CCGG 2 cut(s) 736, 963
MspR9I CCNGG 3 cut(s) 158, 218, 736
MunI CAATTG 3 cut(s) 825, 1029, 1194
MvaI CCWGG 2 cut(s) 158, 218
MvnI CGCG 1 cut(s) 417
MwoI GCNNNNNNNGC 7 cut(s) 68, 116, 279, 683, 845, 854, 1040
NciI CCSGG 1 cut(s) 736
NcoI CCATGG 4 cut(s) 480, 537, 776, 1175
NdeI CATATG 1 cut(s) 1309
NdeII GATC 1 cut(s) 543
NheI GCTAGC 1 cut(s) 568
NlaIV GGNNCC 7 cut(s) 222, 283, 535, 594, 1089, 1164, 1173
NmeAIII GCCGAG 1 cut(s) 413
NmuCI GTSAC 3 cut(s) 574, 967, 1081
NspI RCATGY 1 cut(s) 1304
OliI CACNNNNGTG 1 cut(s) 124
PaeI GCATGC 1 cut(s) 1304
PaeR7I CTCGAG 1 cut(s) 507
PfeI GAWTC 3 cut(s) 164, 180, 499
Pfl23II CGTACG 1 cut(s) 943
PkrI GCNGC 6 cut(s) 20, 73, 112, 419, 679, 841
PleI GAGTC 2 cut(s) 1152, 1319
PpsI GAGTC 2 cut(s) 1152, 1319
Psp6I CCWGG 2 cut(s) 156, 216
PspGI CCWGG 2 cut(s) 156, 216
PspLI CGTACG 1 cut(s) 943
PspN4I GGNNCC 7 cut(s) 222, 283, 535, 594, 1089, 1164, 1173
PspPI GGNCC 5 cut(s) 129, 220, 534, 660, 733
PstNI CAGNNNCTG 1 cut(s) 380
PvuII CAGCTG 2 cut(s) 680, 848
RsaI GTAC 4 cut(s) 215, 594, 808, 945
RsaNI GTAC 4 cut(s) 214, 593, 807, 944
RseI CAYNNNNRTG 2 cut(s) 124, 1010
SaqAI TTAA 2 cut(s) 6, 689
SatI GCNGC 6 cut(s) 19, 72, 111, 418, 678, 840
Sau3AI GATC 1 cut(s) 543
Sau96I GGNCC 5 cut(s) 129, 220, 534, 660, 733
SchI GAGTC 2 cut(s) 1153, 1319
ScrFI CCNGG 3 cut(s) 158, 218, 736
SduI GDGCHC 3 cut(s) 275, 284, 415
SfaNI GCATC 5 cut(s) 429, 759, 784, 967, 1209
Sfr274I CTCGAG 1 cut(s) 507
SinI GGWCC 3 cut(s) 129, 220, 534
SlaI CTCGAG 1 cut(s) 507
SmiMI CAYNNNNRTG 2 cut(s) 124, 1010
SmlI CTYRAG 3 cut(s) 268, 507, 786
SmoI CTYRAG 3 cut(s) 268, 507, 786
SpeI ACTAGT 1 cut(s) 701
SphI GCATGC 1 cut(s) 1304
Sse9I AATT 5 cut(s) 7, 606, 825, 1029, 1194
SsiI CCGC 5 cut(s) 18, 105, 110, 417, 1133
SspMI CTAG 3 cut(s) 356, 569, 702
StyD4I CCNGG 3 cut(s) 156, 216, 734
StyI CCWWGG 5 cut(s) 480, 537, 776, 1175, 1272
TaaI ACNGT 6 cut(s) 187, 194, 597, 646, 1002, 1264
TaiI ACGT 3 cut(s) 124, 321, 459
TaqI TCGA 4 cut(s) 90, 508, 873, 1223
TasI AATT 5 cut(s) 7, 606, 825, 1029, 1194
TauI GCSGC 3 cut(s) 21, 113, 420
TfiI GAWTC 3 cut(s) 164, 180, 499
Tru1I TTAA 2 cut(s) 6, 689
Tru9I TTAA 2 cut(s) 6, 689
TscAI CASTG 2 cut(s) 190, 729
TseFI GTSAC 3 cut(s) 574, 967, 1081
TseI GCWGC 3 cut(s) 71, 677, 839
Tsp45I GTSAC 3 cut(s) 574, 967, 1081
TspDTI ATGAA 3 cut(s) 325, 901, 1296
TspGWI ACGGA 1 cut(s) 989
TspRI CASTG 2 cut(s) 190, 729
VpaK11BI GGWCC 3 cut(s) 129, 220, 534
XceI RCATGY 1 cut(s) 1304
XcmI CCANNNNNNNNNTGG 1 cut(s) 1173
XhoI CTCGAG 1 cut(s) 507
XspI CTAG 3 cut(s) 356, 569, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.