Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003036

Physical Location & Seq

Genomic Coordinates Forward (+)

19438539 .. 19439573

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGTGTCCTTAGTAATTGTGAGGACTATGATCATTTTCTATTCTGGACTAAGTTAATTGATCATTTTGATTTGGAATTATTTGCCGACTTTGTTCAAATGATTCGATGCAAAGACCAAACGACTAACGACAATCTCAGAAGCAGAAGGATAAAGATTTCAGAAGCGTGTCGTCGAGTTACTAATTTCGTTGATAGCTATTTTGTAGAGAAAGTTATAGCCGTCGGAAGGAGGGAAGGTCATTCCGCAGAAAACTGGAAAAGGAAGGAGAAAAGTCTACCAACATGGTGTGCAGCAGTGACTCCATTTGTCCGTGTTCTTCTGTGGGTCTGCTTTCCTATTGCATATCCAATTAGCAAGTTATTGATCTATCTTCTTGGCCACGGACATGTAGCTCTGTTTCGCAGAGCGGAGTTAAAAACACTTGTAGATTTTCATGGCAATGAGGCTGGGAAAGGTGGAGAATTGACACATGATGAGACAACCATTATTGCTGGAGCACTTGAACTCAGTGAGAAAACTGCTAGTGATGCCATGACGCCTATAGCTGAAACTTTTGCAATTGATATCAATGACAAGCTTGACAGGTTTATTTTGGGCAGAGAACCACCAGTTTATGCAAGTGTTGGAGTTAAAGGGTTTAAGGAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF21

Protein Analysis

218

Amino Acids

24.71

Weight (kDa)

6.39

Isoelectric Point (pI)

25.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14240
fragaria_vesca	FvH4_3g26400 FvH4_6g45191
pyrus_communis	pycom13g17170
rosa_chinensis	RchiOBHm_Chr1g0336241 RchiOBHm_Chr3g0495991 RchiOBHm_Chr4g0407181 RchiOBHm_Chr4g0426961 RchiOBHm_Chr4g0434571 RchiOBHm_Chr5g0063671
rosa_multiflora	Rmu_co8070196.1_g000001 Rmu_sc0008896.1_g000001 Rmu_sc0034900.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077390
rosa_rugosa	Rorug05G0573900
rosa_samantha	Rh2AG514100 Rh2CG499000 Rh3CG243400 Rh4BG017300 Rh4CG442300 Rh4DG073900 Rh5AG071200 Rh5CG080000 Rh5DG067700 Rh5DG434300 Rh5DG445700 Rh6AG091300 Rh6CG078900 Rh6DG074700 Rh7CG413500 Rh7DG075700 Rh7DG349600
rosa_wichuraiana	Rw2G052300 Rw3G019460 Rw5G006650 Rw5G010740 Rw7G003450 Rw7G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	277
AciI	CCGC	2 cut(s)	246, 410
AcoI	YGGCCR	1 cut(s)	379
AcyI	GRCGYC	1 cut(s)	539
AfiI	CCNNNNNNNGG	1 cut(s)	228
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	2 cut(s)	98, 506
AluBI	AGCT	4 cut(s)	198, 395, 548, 580
AluI	AGCT	4 cut(s)	198, 395, 548, 580
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	1 cut(s)	473
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	206
BclI	TGATCA	2 cut(s)	31, 61
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	1 cut(s)	543
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
BmsI	GCATC	2 cut(s)	98, 520
BpmI	CTGGAG	1 cut(s)	516
BsaHI	GRCGYC	1 cut(s)	539
BsaJI	CCNNGG	1 cut(s)	382
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	260, 611
Bse3DI	GCAATG	1 cut(s)	448
BseDI	CCNNGG	1 cut(s)	382
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	151, 523
BseNI	ACTGG	2 cut(s)	260, 611
BseXI	GCAGC	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	449
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	502
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	3 cut(s)	31, 61, 366
BspACI	CCGC	2 cut(s)	246, 410
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	2 cut(s)	150, 522
BsrBI	CCGCTC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	2 cut(s)	260, 611
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	3 cut(s)	31, 61, 366
BssNI	GRCGYC	1 cut(s)	539
BstACI	GRCGYC	1 cut(s)	539
BstDEI	CTNAG	4 cut(s)	11, 51, 137, 509
BstDSI	CCRYGG	1 cut(s)	382
BstKTI	GATC	3 cut(s)	34, 64, 369
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	3 cut(s)	31, 61, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNSI	RCATGY	1 cut(s)	392
BstSFI	CTRYAG	1 cut(s)	543
BstV1I	GCAGC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	382
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	303, 517
CseI	GACGC	1 cut(s)	547
CviAII	CATG	5 cut(s)	285, 389, 437, 473, 535
CviJI	RGCY	7 cut(s)	198, 221, 381, 395, 449, 548, 580
CviKI_1	RGCY	7 cut(s)	198, 221, 381, 395, 449, 548, 580
DdeI	CTNAG	4 cut(s)	11, 51, 137, 509
DpnI	GATC	3 cut(s)	33, 63, 368
DpnII	GATC	3 cut(s)	31, 61, 366
EaeI	YGGCCR	1 cut(s)	379
Eco32I	GATATC	1 cut(s)	568
EcoRV	GATATC	1 cut(s)	568
FaeI	CATG	5 cut(s)	288, 392, 440, 476, 538
FatI	CATG	5 cut(s)	284, 388, 436, 472, 534
FbaI	TGATCA	2 cut(s)	31, 61
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	525
GluI	GCNGC	1 cut(s)	294
GsaI	CCCAGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	381
HgaI	GACGC	1 cut(s)	547
Hin1I	GRCGYC	1 cut(s)	539
Hin1II	CATG	5 cut(s)	288, 392, 440, 476, 538
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	2 cut(s)	103, 301
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	3 cut(s)	140, 163, 227
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	278
Hpy99I	CGWCG	2 cut(s)	177, 227
HpyAV	CCTTC	4 cut(s)	141, 222, 230, 259
HpyCH4V	TGCA	5 cut(s)	111, 293, 344, 560, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	4 cut(s)	11, 51, 137, 509
Hsp92I	GRCGYC	1 cut(s)	539
Hsp92II	CATG	5 cut(s)	288, 392, 440, 476, 538
Ksp22I	TGATCA	2 cut(s)	31, 61
Kzo9I	GATC	3 cut(s)	31, 61, 366
LmnI	GCTCC	1 cut(s)	497
LpnPI	CCDG	6 cut(s)	31, 241, 435, 480, 571, 624
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	2 cut(s)	98, 520
MaeI	CTAG	1 cut(s)	525
MaeIII	GTNAC	2 cut(s)	178, 298
MalI	GATC	3 cut(s)	33, 63, 368
MbiI	CCGCTC	1 cut(s)	410
MboI	GATC	3 cut(s)	31, 61, 366
MboII	GAAGA	2 cut(s)	311, 365
MfeI	CAATTG	1 cut(s)	561
MhlI	GDGCHC	1 cut(s)	502
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	7 cut(s)	16, 57, 77, 184, 351, 464, 561
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	2 cut(s)	205, 607
MnlI	CCTC	3 cut(s)	16, 225, 439
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	4 cut(s)	56, 416, 633, 642
MslI	CAYNNNNRTG	2 cut(s)	387, 441
Msp20I	TGGCCA	1 cut(s)	381
MunI	CAATTG	1 cut(s)	561
MwoI	GCNNNNNNNGC	1 cut(s)	530
NdeII	GATC	3 cut(s)	31, 61, 366
NlaIII	CATG	5 cut(s)	288, 392, 440, 476, 538
NmuCI	GTSAC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	392
PciI	ACATGT	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PscI	ACATGT	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	449
RseI	CAYNNNNRTG	2 cut(s)	387, 441
SaqAI	TTAA	4 cut(s)	56, 416, 633, 642
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	3 cut(s)	31, 61, 366
SchI	GAGTC	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	7 cut(s)	200, 241, 397, 460, 550, 582, 590
SfaNI	GCATC	2 cut(s)	98, 520
SfcI	CTRYAG	1 cut(s)	543
SmiMI	CAYNNNNRTG	2 cut(s)	387, 441
Sse9I	AATT	7 cut(s)	16, 57, 77, 184, 351, 464, 561
SsiI	CCGC	2 cut(s)	246, 410
SspMI	CTAG	1 cut(s)	525
TaqI	TCGA	2 cut(s)	106, 175
TasI	AATT	7 cut(s)	16, 57, 77, 184, 351, 464, 561
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	4 cut(s)	56, 416, 633, 642
Tru9I	TTAA	4 cut(s)	56, 416, 633, 642
TscAI	CASTG	2 cut(s)	303, 517
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	425
TspGWI	ACGGA	2 cut(s)	302, 399
TspRI	CASTG	2 cut(s)	303, 517
XceI	RCATGY	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	277
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.