Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003036

Physical Location & Seq

Genomic Coordinates Forward (+)

6883049 .. 6890266

Gene Structure 7218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAATTCTCAGGCCCTTCCTTCTAATTTTGAGAGAGGTATGTTGCTTACTCGATTTATCATGAGCTCATTGAGATGCAATGGGATGACTTGTGACTTGCCATTATGGGTTCTTGATCTTGTACTTGGACATGGAAATGATTTGTTCAGGCGAGCACAGTTGAAAGCCCTCATCTCTATTCACGACCTTCAGGCTGGAAAGGGAGGTGAACTAACACATGATAAGACAACGATTATCAGTGGAGCGCTAGATTTAACTGAAAAGACTGCCAAGGAGGCTATAACACCTATTGAATCAAGGTTGTGCTTGGATGTTGATTCAAAGTTAGACTGCGAAGCAATTGAGAAAATTCTTGCACATGTTATTGCTATCAATGTCTACAAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

DUF21

Protein Analysis

129

Amino Acids

14.25

Weight (kDa)

6.05

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14240
fragaria_vesca	FvH4_3g26400 FvH4_6g45191
pyrus_communis	pycom13g17170
rosa_chinensis	RchiOBHm_Chr1g0336241 RchiOBHm_Chr3g0495991 RchiOBHm_Chr4g0407181 RchiOBHm_Chr4g0426961 RchiOBHm_Chr4g0434571 RchiOBHm_Chr5g0063671
rosa_multiflora	Rmu_co8070196.1_g000001 Rmu_sc0008896.1_g000001 Rmu_sc0034900.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077390
rosa_rugosa	Rorug05G0573900
rosa_samantha	Rh2AG514100 Rh2CG499000 Rh3CG243400 Rh4BG017300 Rh4CG442300 Rh4DG073900 Rh5AG071200 Rh5CG080000 Rh5DG067700 Rh5DG434300 Rh5DG445700 Rh6AG091300 Rh6CG078900 Rh6DG074700 Rh7CG413500 Rh7DG075700 Rh7DG349600
rosa_wichuraiana	Rw2G052300 Rw3G019460 Rw5G006650 Rw5G010740 Rw7G003450 Rw7G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	378
AcsI	RAATTY	2 cut(s)	4, 348
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	1 cut(s)	123
AfeI	AGCGCT	1 cut(s)	246
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	163, 293, 321
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
Alw21I	GWGCWC	2 cut(s)	68, 157
Aor51HI	AGCGCT	1 cut(s)	246
AoxI	GGCC	1 cut(s)	12
ApoI	RAATTY	2 cut(s)	4, 348
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	68
Bbv12I	GWGCWC	2 cut(s)	68, 157
BfaI	CTAG	1 cut(s)	248
BfoI	RGCGCY	1 cut(s)	248
BglI	GCCNNNNNGGC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	13
BmsI	GCATC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	90, 316
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	14
BsiHKAI	GWGCWC	2 cut(s)	68, 157
BsnI	GGCC	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	68, 157
Bsp143I	GATC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	90, 316
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	90, 316
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	153
CciI	TCATGA	1 cut(s)	60
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	4 cut(s)	61, 131, 218, 359
CviJI	RGCY	5 cut(s)	14, 66, 167, 194, 278
CviKI_1	RGCY	5 cut(s)	14, 66, 167, 194, 278
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	68
Eco47III	AGCGCT	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	66
EcoO109I	RGGNCCY	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	4 cut(s)	64, 134, 221, 362
FaiI	YATR	7 cut(s)	41, 62, 106, 132, 219, 281, 360
FatI	CATG	4 cut(s)	60, 130, 217, 358
FblI	GTMKAC	1 cut(s)	378
FokI	GGATG	2 cut(s)	97, 323
FriOI	GRGCYC	1 cut(s)	68
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	1 cut(s)	246
HaeII	RGCGCY	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	4 cut(s)	64, 134, 221, 362
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	2 cut(s)	293, 317
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	209, 379
Hpy188III	TCNNGA	3 cut(s)	61, 113, 182
Hpy8I	GTNNAC	2 cut(s)	209, 379
HpyAV	CCTTC	3 cut(s)	26, 30, 197
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4V	TGCA	2 cut(s)	78, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	4 cut(s)	64, 134, 221, 362
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	3 cut(s)	133, 176, 180
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	2 cut(s)	68, 157
MluCI	AATT	4 cut(s)	4, 25, 339, 348
MnlI	CCTC	4 cut(s)	29, 179, 197, 268
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	2 cut(s)	73, 135
MunI	CAATTG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	4 cut(s)	64, 134, 221, 362
NmuCI	GTSAC	1 cut(s)	92
NspI	RCATGY	1 cut(s)	362
PagI	TCATGA	1 cut(s)	60
PciI	ACATGT	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	293, 317
PscI	ACATGT	1 cut(s)	358
Psp124BI	GAGCTC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	13
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
RseI	CAYNNNNRTG	2 cut(s)	73, 135
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	254
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	68, 157
SetI	ASST	6 cut(s)	40, 68, 189, 208, 289, 302
SfaNI	GCATC	1 cut(s)	65
SmiMI	CAYNNNNRTG	2 cut(s)	73, 135
Sse9I	AATT	4 cut(s)	4, 25, 339, 348
SspMI	CTAG	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	52
TasI	AATT	4 cut(s)	4, 25, 339, 348
TatI	WGTACW	1 cut(s)	121
TfiI	GAWTC	2 cut(s)	293, 317
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	244
XapI	RAATTY	2 cut(s)	4, 348
XceI	RCATGY	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.