Rh7DG349600

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003036
Physical Location & Seq
Forward (+)
46354995 .. 46360196
5202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG349600.1

Sequence Viewer

Length: 360 bp
ATGATCATCTGCTATCCAATCGCCTACCCAATTGGAAAAGTTCTTGATCTTGTACTTGGACATGGAGATGATTTGTTCAGGCGAGCACAGTCAAAAGCCCTCGTCTCTATTCACGACCTTGAGGCTGGAAAGGGAGACTGCCATGGAGGCTATGACCCTCTTGAATCAAGATTGTGCTTGGATGTTGATTCAAATTTTCTTCCTTCCACTAGGAAGCAATTGGGAAAATTCTTGCACGTGTTAGAATGTGTTGCTGAGCTTGTAGGAAAGGGTGCTTTAGCTGAAGGAGACAAGATCACCTTAGAAACTGCAAAACTGTTGAGAAGGAATTCTCTTGCCCAGGATGCATTTACTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
DUF21

Protein Analysis

119

Amino Acids

12.96

Weight (kDa)

6.04

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_VA_C PF22919 82 - 118 3.4e-06 C-terminal domain of V and A type ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 193, 227, 328
AcuI CTGAAG 1 cut(s) 303
AcvI CACGTG 1 cut(s) 238
AfaI GTAC 1 cut(s) 54
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 2 cut(s) 164, 192
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 2 cut(s) 259, 281
AluI AGCT 2 cut(s) 259, 281
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 3 cut(s) 109, 129, 282
ApoI RAATTY 3 cut(s) 193, 227, 328
Asp700I GAANNNNTTC 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 289
BbrPI CACGTG 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 341
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 3 cut(s) 109, 129, 282
BfaI CTAG 1 cut(s) 210
BglI GCCNNNNNGGC 1 cut(s) 147
BlpI GCTNAGC 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 1 cut(s) 334
Bpu1102I GCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 140
BsaAI YACGTR 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 142, 339
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 2 cut(s) 142, 339
BseGI GGATG 2 cut(s) 187, 349
BseMII CTCAG 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 88
BsmAI GTCTC 3 cut(s) 109, 129, 282
BsmBI CGTCTC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 3 cut(s) 3, 46, 294
Bsp1720I GCTNAGC 1 cut(s) 255
Bsp19I CCATGG 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 142, 339
BssMI GATC 3 cut(s) 3, 46, 294
BssT1I CCWWGG 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 90, 318
BstBAI YACGTR 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 255, 301
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 2 cut(s) 187, 349
BstKTI GATC 3 cut(s) 6, 49, 297
BstMAI GTCTC 3 cut(s) 109, 129, 282
BstMBI GATC 3 cut(s) 3, 46, 294
BstMWI GCNNNNNNNGC 2 cut(s) 147, 344
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 142
BtsCI GGATG 2 cut(s) 187, 349
Cac8I GCNNGC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 53
CviAII CATG 2 cut(s) 62, 143
CviJI RGCY 5 cut(s) 98, 125, 150, 259, 281
CviKI_1 RGCY 5 cut(s) 98, 125, 150, 259, 281
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 2 cut(s) 255, 301
DpnI GATC 3 cut(s) 5, 48, 296
DpnII GATC 3 cut(s) 3, 46, 294
Eco130I CCWWGG 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 303
Eco72I CACGTG 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 142
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 142
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 2 cut(s) 65, 146
FaiI YATR 4 cut(s) 63, 144, 153, 358
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FatI CATG 2 cut(s) 61, 142
FbaI TGATCA 1 cut(s) 3
FokI GGATG 2 cut(s) 194, 356
FspBI CTAG 1 cut(s) 210
Hin1II CATG 2 cut(s) 65, 146
HinfI GANTC 2 cut(s) 164, 188
HphI GGTGA 1 cut(s) 289
Hpy188III TCNNGA 4 cut(s) 44, 113, 161, 168
HpyAV CCTTC 3 cut(s) 213, 278, 318
HpyCH4III ACNGT 2 cut(s) 90, 318
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 235, 311, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 344
HpyF3I CTNAG 2 cut(s) 255, 301
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 2 cut(s) 65, 146
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 46, 294
LpnPI CCDG 4 cut(s) 64, 111, 326, 353
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 237
MalI GATC 3 cut(s) 5, 48, 296
MboI GATC 3 cut(s) 3, 46, 294
MboII GAAGA 1 cut(s) 191
MfeI CAATTG 2 cut(s) 30, 218
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 5 cut(s) 30, 193, 218, 227, 328
MnlI CCTC 4 cut(s) 110, 115, 140, 168
Mph1103I ATGCAT 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 328
MslI CAYNNNNRTG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 341
MunI CAATTG 2 cut(s) 30, 218
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 2 cut(s) 147, 344
NcoI CCATGG 1 cut(s) 142
NdeII GATC 3 cut(s) 3, 46, 294
NlaIII CATG 2 cut(s) 65, 146
NsiI ATGCAT 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 164, 188
PmaCI CACGTG 1 cut(s) 238
PmlI CACGTG 1 cut(s) 238
Ppu21I YACGTR 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 339
PspCI CACGTG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 339
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 66
Sau3AI GATC 3 cut(s) 3, 46, 294
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 1 cut(s) 88
SetI ASST 5 cut(s) 120, 240, 261, 283, 302
SfaNI GCATC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 5 cut(s) 30, 193, 218, 227, 328
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 2 cut(s) 90, 318
TaiI ACGT 1 cut(s) 240
TasI AATT 5 cut(s) 30, 193, 218, 227, 328
TatI WGTACW 1 cut(s) 52
TfiI GAWTC 2 cut(s) 164, 188
XapI RAATTY 3 cut(s) 193, 227, 328
XmnI GAANNNNTTC 1 cut(s) 328
XspI CTAG 1 cut(s) 210
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.