Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003036

Physical Location & Seq

Genomic Coordinates Forward (+)

22097480 .. 22099544

Gene Structure 2065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G019460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTTGCCTACTCGATTTATCTTAAGCTCATTGAGATGCAATGGGATATTGGGATTGCGATTCACTTGTGACTTGCCATTCACAAGCTATATATATGCTCAAGATATGGCCTTTCTGTTGGCTTGTTCGCATTCTGATGATCATCTGCTATCCAATCGCCGCCTACCCAATTGGAAAAGTGGGATACCATTGCCAATATTTTCTGAATGGTGGCTGTTCAATGACAAGTTTTCAGCAATCGATTCATTTGTCCTATCATCATTTCCTGGTGCAATGTTCCAGGGAATGAATGGCTTGAGTGTTAAATATCAGGTTCTTGATCTTGTACTTGGACATGGAGATGATTTGTTCAGGCTAGCACAGTCGAAAGCCCTCGTCTCTATTCACGACCATGAGGCTGTAAAGGGAGGTGAACTAACACATGACAACGATTACAGTGGAGCGCTAGATTTAACTGAAAAGACTGCCAAGGAGGCTATGACACCTATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

DUF21

Protein Analysis

164

Amino Acids

18.34

Weight (kDa)

5.41

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14240
fragaria_vesca	FvH4_3g26400 FvH4_6g45191
pyrus_communis	pycom13g17170
rosa_chinensis	RchiOBHm_Chr1g0336241 RchiOBHm_Chr3g0495991 RchiOBHm_Chr4g0407181 RchiOBHm_Chr4g0426961 RchiOBHm_Chr4g0434571 RchiOBHm_Chr5g0063671
rosa_multiflora	Rmu_co8070196.1_g000001 Rmu_sc0008896.1_g000001 Rmu_sc0034900.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077390
rosa_rugosa	Rorug05G0573900
rosa_samantha	Rh2AG514100 Rh2CG499000 Rh3CG243400 Rh4BG017300 Rh4CG442300 Rh4DG073900 Rh5AG071200 Rh5CG080000 Rh5DG067700 Rh5DG434300 Rh5DG445700 Rh6AG091300 Rh6CG078900 Rh6DG074700 Rh7CG413500 Rh7DG075700 Rh7DG349600
rosa_wichuraiana	Rw2G052300 Rw3G019460 Rw5G006650 Rw5G010740 Rw7G003450 Rw7G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	160
AfaI	GTAC	1 cut(s)	327
AfeI	AGCGCT	1 cut(s)	444
AflII	CTTAAG	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	220, 491
AjnI	CCWGG	2 cut(s)	265, 279
AluBI	AGCT	2 cut(s)	27, 87
AluI	AGCT	2 cut(s)	27, 87
Alw26I	GTCTC	1 cut(s)	382
Aor51HI	AGCGCT	1 cut(s)	444
AoxI	GGCC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	445
AsuHPI	GGTGA	1 cut(s)	422
AsuNHI	GCTAGC	1 cut(s)	355
BciT130I	CCWGG	2 cut(s)	267, 281
BciVI	GTATCC	1 cut(s)	177
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	2 cut(s)	356, 446
BfoI	RGCGCY	1 cut(s)	446
BfrI	CTTAAG	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	177
BglI	GCCNNNNNGGC	1 cut(s)	473
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
Bme1390I	CCNGG	2 cut(s)	267, 281
BmrFI	CCNGG	2 cut(s)	267, 281
BmsI	GCATC	1 cut(s)	26
BmtI	GCTAGC	1 cut(s)	359
BpuEI	CTTGAG	2 cut(s)	84, 316
Bsa29I	ATCGAT	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	280, 468
Bse3DI	GCAATG	3 cut(s)	46, 188, 279
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	267, 281
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	280, 468
BseJI	GATNNNNATC	1 cut(s)	141
BseMI	GCAATG	3 cut(s)	46, 188, 279
BshFI	GGCC	1 cut(s)	110
BshVI	ATCGAT	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	382
BsmBI	CGTCTC	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	139, 319
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	110
BspDI	ATCGAT	1 cut(s)	240
BspOI	GCTAGC	1 cut(s)	359
BspTI	CTTAAG	1 cut(s)	22
BsrDI	GCAATG	3 cut(s)	46, 188, 279
BssECI	CCNNGG	2 cut(s)	280, 468
BssMI	GATC	2 cut(s)	139, 319
BssT1I	CCWWGG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	267, 281
Bst4CI	ACNGT	2 cut(s)	363, 437
BstAFI	CTTAAG	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	357
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	2 cut(s)	142, 322
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	2 cut(s)	139, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	2 cut(s)	267, 281
BstSCI	CCNGG	2 cut(s)	265, 279
Bsu15I	ATCGAT	1 cut(s)	240
BsuI	GTATCC	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	110
BsuTUI	ATCGAT	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	1 cut(s)	445
ClaI	ATCGAT	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	3 cut(s)	335, 392, 422
CviQI	GTAC	1 cut(s)	326
DpnI	GATC	2 cut(s)	141, 321
DpnII	GATC	2 cut(s)	139, 319
Eco130I	CCWWGG	1 cut(s)	468
Eco47III	AGCGCT	1 cut(s)	444
EcoRII	CCWGG	2 cut(s)	265, 279
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
Esp3I	CGTCTC	1 cut(s)	382
FaeI	CATG	3 cut(s)	338, 395, 425
FaiI	YATR	9 cut(s)	90, 92, 94, 96, 107, 336, 393, 423, 479
FatI	CATG	3 cut(s)	334, 391, 421
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	160
FspBI	CTAG	2 cut(s)	356, 446
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	1 cut(s)	160
HaeII	RGCGCY	1 cut(s)	446
HaeIII	GGCC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	3 cut(s)	338, 395, 425
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HinfI	GANTC	2 cut(s)	60, 242
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	2 cut(s)	136, 205
Hpy188III	TCNNGA	3 cut(s)	101, 317, 386
Hpy8I	GTNNAC	1 cut(s)	413
HpyCH4III	ACNGT	2 cut(s)	363, 437
HpyCH4V	TGCA	2 cut(s)	39, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
Hsp92II	CATG	3 cut(s)	338, 395, 425
HspAI	GCGC	1 cut(s)	443
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	139, 319
LmnI	GCTCC	1 cut(s)	440
LpnPI	CCDG	6 cut(s)	252, 266, 279, 293, 296, 337
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	2 cut(s)	356, 446
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	2 cut(s)	141, 321
MboI	GATC	2 cut(s)	139, 319
MfeI	CAATTG	1 cut(s)	169
MluCI	AATT	1 cut(s)	169
MnlI	CCTC	4 cut(s)	383, 388, 401, 466
MseI	TTAA	3 cut(s)	23, 303, 452
MslI	CAYNNNNRTG	4 cut(s)	34, 135, 339, 390
MspCI	CTTAAG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	267, 281
MunI	CAATTG	1 cut(s)	169
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	2 cut(s)	267, 281
MwoI	GCNNNNNNNGC	1 cut(s)	473
NdeII	GATC	2 cut(s)	139, 319
NheI	GCTAGC	1 cut(s)	355
NlaIII	CATG	3 cut(s)	338, 395, 425
NmuCI	GTSAC	1 cut(s)	68
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	60, 242
PkrI	GCNGC	1 cut(s)	161
Psp6I	CCWGG	2 cut(s)	265, 279
PspGI	CCWGG	2 cut(s)	265, 279
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
RseI	CAYNNNNRTG	4 cut(s)	34, 135, 339, 390
SaqAI	TTAA	3 cut(s)	23, 303, 452
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	2 cut(s)	139, 319
ScrFI	CCNGG	2 cut(s)	267, 281
SetI	ASST	5 cut(s)	29, 89, 315, 412, 487
SfaNI	GCATC	1 cut(s)	26
SmiMI	CAYNNNNRTG	4 cut(s)	34, 135, 339, 390
SmlI	CTYRAG	3 cut(s)	22, 99, 295
SmoI	CTYRAG	3 cut(s)	22, 99, 295
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	1 cut(s)	160
SspI	AATATT	1 cut(s)	198
SspMI	CTAG	2 cut(s)	356, 446
StyD4I	CCNGG	2 cut(s)	265, 279
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	363, 437
TaqI	TCGA	3 cut(s)	13, 240, 365
TasI	AATT	1 cut(s)	169
TatI	WGTACW	1 cut(s)	325
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	60, 242
Tru1I	TTAA	3 cut(s)	23, 303, 452
Tru9I	TTAA	3 cut(s)	23, 303, 452
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	234, 302
TspRI	CASTG	1 cut(s)	442
Vha464I	CTTAAG	1 cut(s)	22
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XspI	CTAG	2 cut(s)	356, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.