Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003036

Physical Location & Seq

Genomic Coordinates Forward (+)

11775624 .. 11777627

Gene Structure 2004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G010740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCTCAAGATATGTATGGGCTTTCTGTTGGCTTGTTCTCATTCTGATGATCATCTGCTATCCAATCGCCGCCTACCCAATTGGAAAAGTGGGATACCATTGCCAATATTTTCTGAATGGTGGCTGTTCAATGACAAGTTTGCAGCAATCGATTCATTTGTCCTATCATCATTTCCTGGTGCAATGTTCCAGGGAATGAATGGCTTGAGTGTTAAATATCAGGTTCTTGATCTTGTACTTGGACATGGAGATGATTTCTTCAGGCTAGCACAGTCGAAAGCCCTCGTCTCTATTCACGACCTTGAGGCTGGAAAGGGAGGTGAACTAACACATGACAACGATTACAGTGGAGCACTAGATTTAACTGAAAAGACTGCCAAGGAGGCTATGACACCTATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

DUF21

Protein Analysis

134

Amino Acids

14.86

Weight (kDa)

5.23

Isoelectric Point (pI)

28.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14240
fragaria_vesca	FvH4_3g26400 FvH4_6g45191
pyrus_communis	pycom13g17170
rosa_chinensis	RchiOBHm_Chr1g0336241 RchiOBHm_Chr3g0495991 RchiOBHm_Chr4g0407181 RchiOBHm_Chr4g0426961 RchiOBHm_Chr4g0434571 RchiOBHm_Chr5g0063671
rosa_multiflora	Rmu_co8070196.1_g000001 Rmu_sc0008896.1_g000001 Rmu_sc0034900.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077390
rosa_rugosa	Rorug05G0573900
rosa_samantha	Rh2AG514100 Rh2CG499000 Rh3CG243400 Rh4BG017300 Rh4CG442300 Rh4DG073900 Rh5AG071200 Rh5CG080000 Rh5DG067700 Rh5DG434300 Rh5DG445700 Rh6AG091300 Rh6CG078900 Rh6DG074700 Rh7CG413500 Rh7DG075700 Rh7DG349600
rosa_wichuraiana	Rw2G052300 Rw3G019460 Rw5G006650 Rw5G010740 Rw7G003450 Rw7G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	244
AfaI	GTAC	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	130, 401
AjnI	CCWGG	2 cut(s)	175, 189
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	1 cut(s)	292
ApeKI	GCWGC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	332
AsuNHI	GCTAGC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	155
BciT130I	CCWGG	2 cut(s)	177, 191
BciVI	GTATCC	1 cut(s)	87
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	266, 356
BfuI	GTATCC	1 cut(s)	87
BglI	GCCNNNNNGGC	1 cut(s)	383
BisI	GCNGC	2 cut(s)	70, 144
BlsI	GCNGC	2 cut(s)	71, 145
Bme1390I	CCNGG	2 cut(s)	177, 191
BmrFI	CCNGG	2 cut(s)	177, 191
BmtI	GCTAGC	1 cut(s)	269
BpuEI	CTTGAG	2 cut(s)	226, 323
Bsa29I	ATCGAT	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	190, 378
Bse3DI	GCAATG	2 cut(s)	98, 189
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	177, 191
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	190, 378
BseJI	GATNNNNATC	1 cut(s)	51
BseMI	GCAATG	2 cut(s)	98, 189
BseXI	GCAGC	1 cut(s)	155
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	292
BsmBI	CGTCTC	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	49, 229
BspACI	CCGC	1 cut(s)	70
BspDI	ATCGAT	1 cut(s)	150
BspOI	GCTAGC	1 cut(s)	269
BsrDI	GCAATG	2 cut(s)	98, 189
BssECI	CCNNGG	2 cut(s)	190, 378
BssMI	GATC	2 cut(s)	49, 229
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	177, 191
Bst4CI	ACNGT	2 cut(s)	273, 347
BstC8I	GCNNGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	52, 232
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	2 cut(s)	49, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	2 cut(s)	177, 191
BstSCI	CCNGG	2 cut(s)	175, 189
BstV1I	GCAGC	1 cut(s)	155
Bsu15I	ATCGAT	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	267
ClaI	ATCGAT	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	2 cut(s)	245, 332
CviJI	RGCY	8 cut(s)	21, 32, 124, 204, 265, 281, 308, 386
CviKI_1	RGCY	8 cut(s)	21, 32, 124, 204, 265, 281, 308, 386
CviQI	GTAC	1 cut(s)	236
DpnI	GATC	2 cut(s)	51, 231
DpnII	GATC	2 cut(s)	49, 229
Eco130I	CCWWGG	1 cut(s)	378
Eco57I	CTGAAG	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	175, 189
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	292
FaeI	CATG	2 cut(s)	248, 335
FaiI	YATR	5 cut(s)	13, 17, 246, 333, 389
FatI	CATG	2 cut(s)	244, 331
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	2 cut(s)	70, 144
Fsp4HI	GCNGC	2 cut(s)	70, 144
FspBI	CTAG	2 cut(s)	266, 356
GluI	GCNGC	2 cut(s)	70, 144
Hin1II	CATG	2 cut(s)	248, 335
HinfI	GANTC	1 cut(s)	152
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	2 cut(s)	46, 115
Hpy188III	TCNNGA	3 cut(s)	7, 227, 296
Hpy8I	GTNNAC	1 cut(s)	323
HpyCH4III	ACNGT	2 cut(s)	273, 347
HpyCH4V	TGCA	2 cut(s)	143, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
Hsp92II	CATG	2 cut(s)	248, 335
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	49, 229
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	7 cut(s)	162, 176, 189, 203, 206, 247, 294
Lsp1109I	GCAGC	1 cut(s)	155
MaeI	CTAG	2 cut(s)	266, 356
MalI	GATC	2 cut(s)	51, 231
MboI	GATC	2 cut(s)	49, 229
MboII	GAAGA	1 cut(s)	250
MfeI	CAATTG	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	1 cut(s)	79
MnlI	CCTC	4 cut(s)	293, 298, 311, 376
MseI	TTAA	2 cut(s)	213, 362
MslI	CAYNNNNRTG	2 cut(s)	45, 249
MspR9I	CCNGG	2 cut(s)	177, 191
MunI	CAATTG	1 cut(s)	79
MvaI	CCWGG	2 cut(s)	177, 191
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeII	GATC	2 cut(s)	49, 229
NheI	GCTAGC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	248, 335
PfeI	GAWTC	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	71, 145
Psp6I	CCWGG	2 cut(s)	175, 189
PspGI	CCWGG	2 cut(s)	175, 189
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
RseI	CAYNNNNRTG	2 cut(s)	45, 249
SaqAI	TTAA	2 cut(s)	213, 362
SatI	GCNGC	2 cut(s)	70, 144
Sau3AI	GATC	2 cut(s)	49, 229
ScrFI	CCNGG	2 cut(s)	177, 191
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	4 cut(s)	225, 303, 322, 397
SmiMI	CAYNNNNRTG	2 cut(s)	45, 249
SmlI	CTYRAG	3 cut(s)	5, 205, 302
SmoI	CTYRAG	3 cut(s)	5, 205, 302
Sse9I	AATT	1 cut(s)	79
SsiI	CCGC	1 cut(s)	70
SspI	AATATT	1 cut(s)	108
SspMI	CTAG	2 cut(s)	266, 356
StyD4I	CCNGG	2 cut(s)	175, 189
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	273, 347
TaqI	TCGA	2 cut(s)	150, 275
TasI	AATT	1 cut(s)	79
TatI	WGTACW	1 cut(s)	235
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	213, 362
Tru9I	TTAA	2 cut(s)	213, 362
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	144, 212
TspRI	CASTG	1 cut(s)	352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XspI	CTAG	2 cut(s)	266, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.