Rh5DG445700

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003036
Physical Location & Seq
Forward (+)
71192405 .. 71202089
9685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG445700.1

Sequence Viewer

Length: 570 bp
ATGTTGCCTACTCGATTTGTCTTAAGCTCATTGAGATGCAATGGGATATTGGGATTGCGATTCACTTGTGACTTGCCATTCACAAGCTATATGCTCAAAATATGTATGGGCTTTCTGTTGGCTTGTTCACATTCTGATGATCATCTGCTATCCAGTATCGCCTACCCAATTGGAAAAGTTCTTGATCTTGTACTTGGACATGGAGATCATTTGTTCAGGAGAGCACAGTCGAAAGCCCTTGTCTCTATTCACGACCTTGAGGCTGGAAAGGGAGGTGAACTAACACATGACAACGATTACAGTGGAGCGCTAGATTTAACTGAAAAGCTTGTAGGAAAGGGTGCTTTAGCTGAAGGAGACAAGATCACCTTAGAAACTGCAAAGCTGTTGAGAGAGAATTCTCTCGCGCAGGATGTATTTACTCCGAAAATCAAGTATACCTCTACCGTTGCATCTTTTGCGGTCTCCGATGAATTGTTACAACTTCCACTTAAAGGCTGCTGCAGTGTCATCAGTTTATCAAGTTCCTCCCTTATGCTGCAGGCTTCAGCATCTATTCTGAGGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
DUF21

Protein Analysis

189

Amino Acids

20.35

Weight (kDa)

6.58

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_VA_C PF22919 109 - 151 4.9e-06 C-terminal domain of V and A type ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 437
AccII CGCG 1 cut(s) 407
AciI CCGC 1 cut(s) 461
AcsI RAATTY 1 cut(s) 397
AcuI CTGAAG 2 cut(s) 372, 531
AfaI GTAC 1 cut(s) 192
AfeI AGCGCT 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 494
AflII CTTAAG 1 cut(s) 22
AluBI AGCT 5 cut(s) 27, 87, 328, 350, 385
AluI AGCT 5 cut(s) 27, 87, 328, 350, 385
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 3 cut(s) 247, 351, 469
Aor51HI AGCGCT 1 cut(s) 309
ApeKI GCWGC 3 cut(s) 498, 501, 538
ApoI RAATTY 1 cut(s) 397
AspLEI GCGC 2 cut(s) 310, 409
AsuHPI GGTGA 2 cut(s) 287, 358
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 3 cut(s) 485, 488, 525
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 3 cut(s) 247, 351, 469
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 2 cut(s) 502, 539
BfoI RGCGCY 1 cut(s) 311
BfrI CTTAAG 1 cut(s) 22
BisI GCNGC 3 cut(s) 499, 502, 539
BlsI GCNGC 3 cut(s) 500, 503, 540
BmsI GCATC 3 cut(s) 26, 461, 560
BpuEI CTTGAG 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 469
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse1I ACTGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 141
BseGI GGATG 1 cut(s) 418
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 494
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 551
BseNI ACTGG 1 cut(s) 153
BseXI GCAGC 3 cut(s) 485, 488, 525
Bsh1236I CGCG 1 cut(s) 407
BsiHKAI GWGCWC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 494
BsmAI GTCTC 3 cut(s) 247, 351, 469
Bso31I GGTCTC 1 cut(s) 469
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 4 cut(s) 139, 184, 205, 363
BspACI CCGC 1 cut(s) 461
BspCNI CTCAG 1 cut(s) 552
BspFNI CGCG 1 cut(s) 407
BspMAI CTGCAG 2 cut(s) 506, 543
BspTI CTTAAG 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 469
BsrDI GCAATG 1 cut(s) 46
BsrI ACTGG 1 cut(s) 153
BssMI GATC 4 cut(s) 139, 184, 205, 363
BssNAI GTATAC 1 cut(s) 438
Bst1107I GTATAC 1 cut(s) 438
Bst4CI ACNGT 3 cut(s) 228, 302, 448
BstAFI CTTAAG 1 cut(s) 22
BstAPI GCANNNNNTGC 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 2 cut(s) 370, 560
BstF5I GGATG 1 cut(s) 418
BstFNI CGCG 1 cut(s) 407
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 2 cut(s) 310, 409
BstKTI GATC 4 cut(s) 142, 187, 208, 366
BstMAI GTCTC 3 cut(s) 247, 351, 469
BstMBI GATC 4 cut(s) 139, 184, 205, 363
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstSFI CTRYAG 2 cut(s) 502, 539
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 3 cut(s) 485, 488, 525
BstZ17I GTATAC 1 cut(s) 438
BtsCI GGATG 1 cut(s) 418
BtsI GCAGTG 1 cut(s) 511
BtsIMutI CAGTG 2 cut(s) 307, 511
Cac8I GCNNGC 1 cut(s) 543
CfoI GCGC 2 cut(s) 310, 409
Csp6I GTAC 1 cut(s) 191
CviAII CATG 2 cut(s) 200, 287
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 2 cut(s) 370, 560
DpnI GATC 4 cut(s) 141, 186, 207, 365
DpnII GATC 4 cut(s) 139, 184, 205, 363
Eco31I GGTCTC 1 cut(s) 469
Eco47III AGCGCT 1 cut(s) 309
Eco57I CTGAAG 2 cut(s) 372, 531
EcoRI GAATTC 1 cut(s) 397
FaeI CATG 2 cut(s) 203, 290
FaiI YATR 9 cut(s) 90, 92, 103, 107, 201, 288, 438, 536, 568
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FatI CATG 2 cut(s) 199, 286
FbaI TGATCA 1 cut(s) 139
FblI GTMKAC 1 cut(s) 437
Fnu4HI GCNGC 3 cut(s) 499, 502, 539
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 3 cut(s) 499, 502, 539
FspBI CTAG 1 cut(s) 311
GlaI GCGC 2 cut(s) 309, 408
GluI GCNGC 3 cut(s) 499, 502, 539
HaeII RGCGCY 1 cut(s) 311
HhaI GCGC 2 cut(s) 310, 409
Hin1II CATG 2 cut(s) 203, 290
Hin6I GCGC 2 cut(s) 308, 407
HinP1I GCGC 2 cut(s) 308, 407
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 1 cut(s) 60
HphI GGTGA 2 cut(s) 287, 358
Hpy166II GTNNAC 3 cut(s) 128, 278, 438
Hpy188I TCNGA 4 cut(s) 136, 426, 469, 561
Hpy188III TCNNGA 3 cut(s) 182, 217, 251
Hpy8I GTNNAC 3 cut(s) 128, 278, 438
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 3 cut(s) 228, 302, 448
HpyCH4V TGCA 5 cut(s) 39, 380, 452, 504, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 2 cut(s) 370, 560
Hsp92II CATG 2 cut(s) 203, 290
HspAI GCGC 2 cut(s) 308, 407
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 4 cut(s) 139, 184, 205, 363
LmnI GCTCC 1 cut(s) 305
LpnPI CCDG 5 cut(s) 166, 202, 249, 395, 527
Lsp1109I GCAGC 3 cut(s) 485, 488, 525
LweI GCATC 3 cut(s) 26, 461, 560
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 68, 477
MalI GATC 4 cut(s) 141, 186, 207, 365
MboI GATC 4 cut(s) 139, 184, 205, 363
MfeI CAATTG 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 3 cut(s) 168, 397, 473
MnlI CCTC 5 cut(s) 253, 266, 451, 538, 555
MseI TTAA 3 cut(s) 23, 317, 492
MslI CAYNNNNRTG 2 cut(s) 34, 135
MspCI CTTAAG 1 cut(s) 22
MunI CAATTG 1 cut(s) 168
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 1 cut(s) 458
NdeII GATC 4 cut(s) 139, 184, 205, 363
NlaIII CATG 2 cut(s) 203, 290
NmuCI GTSAC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 60
PkrI GCNGC 3 cut(s) 500, 503, 540
PstI CTGCAG 2 cut(s) 506, 543
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
RseI CAYNNNNRTG 2 cut(s) 34, 135
SaqAI TTAA 3 cut(s) 23, 317, 492
SatI GCNGC 3 cut(s) 499, 502, 539
Sau3AI GATC 4 cut(s) 139, 184, 205, 363
SduI GDGCHC 1 cut(s) 226
SetI ASST 9 cut(s) 29, 89, 258, 277, 330, 352, 371, 387, 443
SfaNI GCATC 3 cut(s) 26, 461, 560
SfcI CTRYAG 2 cut(s) 502, 539
SmiMI CAYNNNNRTG 2 cut(s) 34, 135
SmlI CTYRAG 2 cut(s) 22, 257
SmoI CTYRAG 2 cut(s) 22, 257
Sse9I AATT 3 cut(s) 168, 397, 473
SsiI CCGC 1 cut(s) 461
SspMI CTAG 1 cut(s) 311
TaaI ACNGT 3 cut(s) 228, 302, 448
TaqI TCGA 2 cut(s) 13, 230
TasI AATT 3 cut(s) 168, 397, 473
TatI WGTACW 1 cut(s) 190
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 3 cut(s) 23, 317, 492
Tru9I TTAA 3 cut(s) 23, 317, 492
TscAI CASTG 2 cut(s) 307, 511
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 3 cut(s) 498, 501, 538
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 486
TspRI CASTG 2 cut(s) 307, 511
Vha464I CTTAAG 1 cut(s) 22
XapI RAATTY 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 437
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.