Rh4BG017300

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003036
Physical Location & Seq
Forward (+)
2741191 .. 2744408
3218 bp
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UTR
Exon/CDS
Intron
Rh4BG017300.1

Sequence Viewer

Length: 207 bp
ATGGTTATTCCACAAGCAATATGCATTAGATATGGATTTGCTGTGGGTTCCAACTTTGTATTGCTTGTCCGAATTTTGATGATTATTTGCTACCCAATGGCTTATTCAATTGGAAAGATATTGAACTCTGTTCTGGAACATAATGAAGCATTATTTAGGCGAGCTCAGTTTAAAGCCCTCGTCTCCATCCAAAGCAAAGAGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

68

Amino Acids

7.69

Weight (kDa)

9.51

Isoelectric Point (pI)

26.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 2 - 67 3e-09 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 72
AgsI TTSAA 2 cut(s) 108, 124
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 187
ApoI RAATTY 1 cut(s) 72
BanII GRGCYC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 166
BccI CCATC 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 49
BseGI GGATG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 187
BsmBI CGTCTC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 162
CviJI RGCY 3 cut(s) 101, 164, 176
CviKI_1 RGCY 3 cut(s) 101, 164, 176
DdeI CTNAG 1 cut(s) 165
DraI TTTAAA 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 166
Eco53kI GAGCTC 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 164
EcoT22I ATGCAT 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 187
FaiI YATR 3 cut(s) 22, 33, 141
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 71
Hpy188III TCNNGA 1 cut(s) 134
HpyCH4V TGCA 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 165
LpnPI CCDG 1 cut(s) 119
MfeI CAATTG 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 2 cut(s) 72, 108
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 2 cut(s) 188, 193
Mph1103I ATGCAT 1 cut(s) 26
MseI TTAA 1 cut(s) 171
MunI CAATTG 1 cut(s) 108
NlaIV GGNNCC 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 49
SacI GAGCTC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 171
SduI GDGCHC 1 cut(s) 166
SetI ASST 2 cut(s) 166, 204
SgeI CNNG 5 cut(s) 26, 77, 146, 173, 191
Sse9I AATT 2 cut(s) 72, 108
SstI GAGCTC 1 cut(s) 166
TasI AATT 2 cut(s) 72, 108
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 159
XapI RAATTY 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.