Rorug05G0573900

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003036
Physical Location & Seq
Forward (+)
76898816 .. 76899046
231 bp
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UTR
Exon/CDS
Intron
Rorug05G0573900.1

Sequence Viewer

Length: 231 bp
ATGGATGCTCTTGTTGCTGCTTGGTTGCCTGGTACTGAAGGAGAGGGAATTGCAGATGTTATCTTTGGAGATTATAACTTCGAGGGCAAGCTACCGGTGACATGGTTTAAAAGTGTTGAACAGCTCCCATTGGATGTCGGAAGCAACTCATATGACCCTTTATATCCTCTTGGGTTTGGATTGACATGCAATACGGAGAAAGTTATACACCAAGCAGATTTTGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
DUF21

Protein Analysis

76

Amino Acids

8.35

Weight (kDa)

4.09

Isoelectric Point (pI)

17.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_3_C PF01915 2 - 62 2.4e-17 Glycosyl hydrolase family 3 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 1 cut(s) 34
AgeI ACCGGT 1 cut(s) 94
AgsI TTSAA 1 cut(s) 119
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 2 cut(s) 91, 124
AluI AGCT 2 cut(s) 91, 124
ApeKI GCWGC 1 cut(s) 17
AsiGI ACCGGT 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 109
BbvI GCAGC 1 cut(s) 4
BciT130I CCWGG 1 cut(s) 30
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 30
BsaWI WCCGGW 1 cut(s) 94
Bse118I RCCGGY 1 cut(s) 94
BseBI CCWGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 10, 139
BseXI GCAGC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 94
BsiSI CCGG 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 89
BstF5I GGATG 2 cut(s) 10, 139
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 30
BstNSI RCATGY 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 4
BtsCI GGATG 2 cut(s) 10, 139
Cac8I GCNNGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 94
Csp6I GTAC 1 cut(s) 33
CspAI ACCGGT 1 cut(s) 94
CviAII CATG 2 cut(s) 102, 186
CviJI RGCY 2 cut(s) 91, 124
CviKI_1 RGCY 2 cut(s) 91, 124
CviQI GTAC 1 cut(s) 33
DraI TTTAAA 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 28
FaeI CATG 2 cut(s) 105, 189
FaiI YATR 7 cut(s) 75, 103, 151, 153, 163, 187, 206
FatI CATG 2 cut(s) 101, 185
FauNDI CATATG 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 2 cut(s) 17, 146
Fsp4HI GCNGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 18
HapII CCGG 1 cut(s) 95
Hin1II CATG 2 cut(s) 105, 189
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 53, 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
Hsp92II CATG 2 cut(s) 105, 189
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 3 cut(s) 15, 42, 108
Lsp1109I GCAGC 1 cut(s) 4
MaeIII GTNAC 1 cut(s) 97
MluCI AATT 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 3 cut(s) 37, 76, 177
MseI TTAA 1 cut(s) 108
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeI CATATG 1 cut(s) 151
NlaIII CATG 2 cut(s) 105, 189
NmuCI GTSAC 1 cut(s) 97
NspI RCATGY 1 cut(s) 189
PinAI ACCGGT 1 cut(s) 94
PkrI GCNGC 1 cut(s) 19
PsiI TTATAA 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 30
SetI ASST 2 cut(s) 93, 126
Sse9I AATT 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 28
TaqI TCGA 1 cut(s) 81
TasI AATT 1 cut(s) 48
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 97
TspGWI ACGGA 1 cut(s) 209
XceI RCATGY 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.