Rw7G036960

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003036
Physical Location & Seq
Forward (+)
56026731 .. 56027831
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G036960.1

Sequence Viewer

Length: 495 bp
ATGGGTTGGCATCAAAACCACGAAAAATATCTGGCCCTTCCTTCATACCTTGATGAAATCTTTCATCCTGTTGTTGCCGTTTTGCTGTCTGTAACATTTATTCTAATTTTCAGAGAGATTATTCCACAAGCTATATGCTCAAGATATGGGCTTTCTGTTGCTTCGAATTTTGTTTGCCTTATTGGCATTCTGATGATCATCTGCTATCCAAACGCCTACCCAATTAGAAAAACTGCCAAGGAGGGTATGACACCTATTGAATCAAGATTGTGCTTGGATGTTGATTCAAAGTTAGACTGGTACGTCTTTCATTGGCCTTTTGTGGTTTTTATATATGCTGGAAGTGATCTAGTTTTCTTCCTTCCACTAATGACATTTCTTGATCCTTACTTTTTGTTGTATCTGCTGTTTATTGAGCAGAGTATAGTAGAGCAGAGTATAGTAGAAAGTTCAGAAATGAGAAGGAATTGTTATGTTCATATGGTAACAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
DUF21

Protein Analysis

164

Amino Acids

19.1

Weight (kDa)

5.43

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 21 - 79 2.6e-10 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AclWI GGATC 1 cut(s) 377
AcsI RAATTY 1 cut(s) 166
AfaI GTAC 1 cut(s) 302
AgsI TTSAA 2 cut(s) 260, 288
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
AlwI GGATC 1 cut(s) 377
AoxI GGCC 2 cut(s) 33, 314
ApoI RAATTY 1 cut(s) 166
Asp700I GAANNNNTTC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 34
AsuII TTCGAA 1 cut(s) 164
BceAI ACGGC 1 cut(s) 62
BclI TGATCA 1 cut(s) 195
BfaI CTAG 1 cut(s) 350
BglI GCCNNNNNGGC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 34
BmsI GCATC 1 cut(s) 19
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 302
Bse8I GATNNNNATC 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 64, 283
BseJI GATNNNNATC 1 cut(s) 197
BseNI ACTGG 1 cut(s) 302
BshFI GGCC 2 cut(s) 35, 316
BsmI GAATGC 1 cut(s) 186
BsnI GGCC 2 cut(s) 35, 316
Bsp119I TTCGAA 1 cut(s) 164
Bsp143I GATC 3 cut(s) 195, 346, 382
BspANI GGCC 2 cut(s) 35, 316
BspPI GGATC 1 cut(s) 377
BspT104I TTCGAA 1 cut(s) 164
BsrI ACTGG 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 3 cut(s) 195, 346, 382
BssT1I CCWWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 490
BstBI TTCGAA 1 cut(s) 164
BstF5I GGATG 2 cut(s) 64, 283
BstKTI GATC 3 cut(s) 198, 349, 385
BstMBI GATC 3 cut(s) 195, 346, 382
BstMWI GCNNNNNNNGC 1 cut(s) 183
BsuRI GGCC 2 cut(s) 35, 316
BtsCI GGATG 2 cut(s) 64, 283
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 301
CviJI RGCY 4 cut(s) 35, 131, 151, 316
CviKI_1 RGCY 4 cut(s) 35, 131, 151, 316
CviQI GTAC 1 cut(s) 301
DpnI GATC 3 cut(s) 197, 348, 384
DpnII GATC 3 cut(s) 195, 346, 382
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FauNDI CATATG 1 cut(s) 480
FbaI TGATCA 1 cut(s) 195
FokI GGATG 2 cut(s) 51, 290
FspBI CTAG 1 cut(s) 350
HaeIII GGCC 2 cut(s) 35, 316
HinfI GANTC 2 cut(s) 260, 284
Hpy188I TCNGA 3 cut(s) 113, 192, 454
Hpy188III TCNNGA 3 cut(s) 141, 264, 380
HpyAV CCTTC 4 cut(s) 47, 51, 371, 456
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4IV ACGT 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpySE526I ACGT 1 cut(s) 303
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 3 cut(s) 195, 346, 382
LpnPI CCDG 4 cut(s) 17, 81, 283, 324
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 350
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 91, 484
MalI GATC 3 cut(s) 197, 348, 384
MboI GATC 3 cut(s) 195, 346, 382
MboII GAAGA 1 cut(s) 349
MluCI AATT 4 cut(s) 105, 166, 222, 466
MnlI CCTC 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 183
NdeI CATATG 1 cut(s) 480
NdeII GATC 3 cut(s) 195, 346, 382
NspV TTCGAA 1 cut(s) 164
PctI GAATGC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 2 cut(s) 260, 284
PspPI GGNCC 1 cut(s) 34
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 191
Sau3AI GATC 3 cut(s) 195, 346, 382
Sau96I GGNCC 1 cut(s) 34
SetI ASST 4 cut(s) 51, 133, 256, 306
SfaNI GCATC 1 cut(s) 19
SfuI TTCGAA 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
Sse9I AATT 4 cut(s) 105, 166, 222, 466
SspMI CTAG 1 cut(s) 350
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 490
TaiI ACGT 1 cut(s) 306
TaqI TCGA 1 cut(s) 164
TasI AATT 4 cut(s) 105, 166, 222, 466
TfiI GAWTC 2 cut(s) 260, 284
TspDTI ATGAA 5 cut(s) 33, 53, 69, 299, 467
XapI RAATTY 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 60
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.