Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8070196.1

Orthogroup ID

OG0003036

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 567

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8070196.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atggaggctcttcctgtcttcttggacagtcttgtgcctccttgggcagctattgccatatccgtcactctcattcttttgtttggagagataatgccgcaagctgtgtgtactcgctatggattgactgttggggcaacactggcaccatttgtgcgcgttcttctcatgcttttcctccctatttcttatccaattagtaaggttctggattacatgttaggtaagggacagactgcccttctaagaagagcagagctaaagacttttgtggactttcatggaaatgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS DUF21

Protein Analysis

97

Amino Acids

10.69

Weight (kDa)

6.55

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14240
fragaria_vesca	FvH4_3g26400 FvH4_6g45191
pyrus_communis	pycom13g17170
rosa_chinensis	RchiOBHm_Chr1g0336241 RchiOBHm_Chr3g0495991 RchiOBHm_Chr4g0407181 RchiOBHm_Chr4g0426961 RchiOBHm_Chr4g0434571 RchiOBHm_Chr5g0063671
rosa_multiflora	Rmu_co8070196.1_g000001 Rmu_sc0008896.1_g000001 Rmu_sc0034900.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077390
rosa_rugosa	Rorug05G0573900
rosa_samantha	Rh2AG514100 Rh2CG499000 Rh3CG243400 Rh4BG017300 Rh4CG442300 Rh4DG073900 Rh5AG071200 Rh5CG080000 Rh5DG067700 Rh5DG434300 Rh5DG445700 Rh6AG091300 Rh6CG078900 Rh6DG074700 Rh7CG413500 Rh7DG075700 Rh7DG349600
rosa_wichuraiana	Rw2G052300 Rw3G019460 Rw5G006650 Rw5G010740 Rw7G003450 Rw7G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccII	CGCG	1 cut(s)	159
AciI	CCGC	1 cut(s)	98
AfaI	GTAC	1 cut(s)	112
AflIII	ACRYGT	1 cut(s)	216
AluBI	AGCT	3 cut(s)	50, 104, 259
AluI	AGCT	3 cut(s)	50, 104, 259
ApeKI	GCWGC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	59
BisI	GCNGC	2 cut(s)	48, 98
BlsI	GCNGC	2 cut(s)	49, 99
BmiI	GGNNCC	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	159
BshNI	GGYRCC	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	147
BspQI	GCTCTTC	2 cut(s)	15, 244
BspT107I	GGYRCC	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	29, 130
Bst6I	CTCTTC	2 cut(s)	15, 244
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	245
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 143
BstNSI	RCATGY	1 cut(s)	220
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	3 cut(s)	169, 217, 281
CviJI	RGCY	4 cut(s)	8, 50, 104, 259
CviKI_1	RGCY	4 cut(s)	8, 50, 104, 259
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	1 cut(s)	245
Eam1104I	CTCTTC	2 cut(s)	15, 244
EarI	CTCTTC	2 cut(s)	15, 244
Eco130I	CCWWGG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	3 cut(s)	172, 220, 284
FaiI	YATR	5 cut(s)	59, 120, 170, 218, 282
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	3 cut(s)	168, 216, 280
Fnu4HI	GCNGC	2 cut(s)	48, 98
Fsp4HI	GCNGC	2 cut(s)	48, 98
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	2 cut(s)	48, 98
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	3 cut(s)	172, 220, 284
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	111, 274
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	2 cut(s)	111, 274
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	29, 130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 143
HpyF3I	CTNAG	1 cut(s)	245
Hsp92II	CATG	3 cut(s)	172, 220, 284
HspAI	GCGC	1 cut(s)	157
LguI	GCTCTTC	2 cut(s)	15, 244
LpnPI	CCDG	3 cut(s)	27, 128, 194
Lsp1109I	GCAGC	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	10, 155, 261
MluCI	AATT	1 cut(s)	195
MnlI	CCTC	2 cut(s)	48, 188
MslI	CAYNNNNRTG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	53, 143
NlaIII	CATG	3 cut(s)	172, 220, 284
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	220
PciI	ACATGT	1 cut(s)	216
PciSI	GCTCTTC	2 cut(s)	15, 244
PkrI	GCNGC	2 cut(s)	49, 99
PscI	ACATGT	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	147
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	285
SapI	GCTCTTC	2 cut(s)	15, 244
SatI	GCNGC	2 cut(s)	48, 98
SetI	ASST	5 cut(s)	52, 106, 207, 226, 261
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	1 cut(s)	195
SsiI	CCGC	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	29, 130
TasI	AATT	1 cut(s)	195
TatI	WGTACW	1 cut(s)	110
TauI	GCSGC	1 cut(s)	100
TscAI	CASTG	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	269
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	147
XceI	RCATGY	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.