Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003036

Physical Location & Seq

Genomic Coordinates Forward (+)

6127358 .. 6131645

Gene Structure 4288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG080000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTATCGCCCGCCGACAAGGCCCATGCTGTCAGGGCCGCCGGTGAAATAGTCCTGAATTTTGGATTCGTTCTAGCCATGACAAAATTCACTCAACACTACCTAGTACGCACCAGAGATGCTATAAGCAGAAGTATAGACTGTATAGGTTGTTTCCTTGTTCTTGATCTTGTACTTGGACATGGAAATGATTTGTTCAGGCGAGCACAGTTGAAAGCCCTCATCTCTATTCACGACCTTCAGGCTGGAAAGGGAGGTGAACTAACACATGATAAGACAACGATTATCAGTGGAGCGCTAGATTTAACTGAAAAGACTGCCAAGGAGGCTATAACACCTATTGAATCAAGGTTGTGCTTGGATGTTGATTCAAAGTTAGACTGCGAAGCAATTGAGAAAATTCTTGCACATAACTGGTATATGGTAGGAAGAGAGAAGACCATTATAGTAGTGGTGATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

DUF21

Protein Analysis

154

Amino Acids

16.94

Weight (kDa)

6.58

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14240
fragaria_vesca	FvH4_3g26400 FvH4_6g45191
pyrus_communis	pycom13g17170
rosa_chinensis	RchiOBHm_Chr1g0336241 RchiOBHm_Chr3g0495991 RchiOBHm_Chr4g0407181 RchiOBHm_Chr4g0426961 RchiOBHm_Chr4g0434571 RchiOBHm_Chr5g0063671
rosa_multiflora	Rmu_co8070196.1_g000001 Rmu_sc0008896.1_g000001 Rmu_sc0034900.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077390
rosa_rugosa	Rorug05G0573900
rosa_samantha	Rh2AG514100 Rh2CG499000 Rh3CG243400 Rh4BG017300 Rh4CG442300 Rh4DG073900 Rh5AG071200 Rh5CG080000 Rh5DG067700 Rh5DG434300 Rh5DG445700 Rh6AG091300 Rh6CG078900 Rh6DG074700 Rh7CG413500 Rh7DG075700 Rh7DG349600
rosa_wichuraiana	Rw2G052300 Rw3G019460 Rw5G006650 Rw5G010740 Rw7G003450 Rw7G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	12, 39
AcsI	RAATTY	3 cut(s)	58, 86, 399
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	2 cut(s)	108, 174
AfeI	AGCGCT	1 cut(s)	297
AgsI	TTSAA	3 cut(s)	214, 344, 372
Alw21I	GWGCWC	1 cut(s)	208
Aor51HI	AGCGCT	1 cut(s)	297
AoxI	GGCC	2 cut(s)	21, 36
ApoI	RAATTY	3 cut(s)	58, 86, 399
AseI	ATTAAT	1 cut(s)	459
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	2 cut(s)	22, 36
AsuHPI	GGTGA	2 cut(s)	56, 269
BbsI	GAAGAC	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	208
BfaI	CTAG	3 cut(s)	74, 104, 299
BfoI	RGCGCY	1 cut(s)	299
BglI	GCCNNNNNGGC	2 cut(s)	20, 326
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	22, 36
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	321
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	367
BseNI	ACTGG	1 cut(s)	419
BshFI	GGCC	2 cut(s)	23, 38
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	42
BsnI	GGCC	2 cut(s)	23, 38
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	2 cut(s)	12, 39
BspANI	GGCC	2 cut(s)	23, 38
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	143, 210
Bst6I	CTCTTC	1 cut(s)	424
BstC8I	GCNNGC	2 cut(s)	12, 204
BstF5I	GGATG	1 cut(s)	367
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 35, 326
BstV2I	GAAGAC	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	23, 38
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	12, 204
CfoI	GCGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	22, 36
Csp6I	GTAC	2 cut(s)	107, 173
CviAII	CATG	4 cut(s)	26, 79, 182, 269
CviJI	RGCY	6 cut(s)	23, 38, 77, 218, 245, 329
CviKI_1	RGCY	6 cut(s)	23, 38, 77, 218, 245, 329
CviQI	GTAC	2 cut(s)	107, 173
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	321
Eco47III	AGCGCT	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	4 cut(s)	29, 82, 185, 272
FatI	CATG	4 cut(s)	25, 78, 181, 268
FauI	CCCGC	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	3 cut(s)	74, 104, 299
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	23, 38
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	4 cut(s)	29, 82, 185, 272
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HinfI	GANTC	3 cut(s)	66, 344, 368
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	2 cut(s)	56, 269
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188III	TCNNGA	3 cut(s)	55, 164, 233
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	248
HpyCH4III	ACNGT	2 cut(s)	143, 210
HpyCH4V	TGCA	1 cut(s)	407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 35, 326
Hsp92II	CATG	4 cut(s)	29, 82, 185, 272
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	8 cut(s)	19, 55, 68, 127, 184, 227, 231, 400
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	3 cut(s)	74, 104, 299
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	441, 448
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	5 cut(s)	58, 86, 390, 399, 460
MnlI	CCTC	3 cut(s)	230, 248, 319
MseI	TTAA	2 cut(s)	305, 459
MslI	CAYNNNNRTG	1 cut(s)	186
MspI	CCGG	1 cut(s)	42
MunI	CAATTG	1 cut(s)	390
MwoI	GCNNNNNNNGC	3 cut(s)	20, 35, 326
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	4 cut(s)	29, 82, 185, 272
PfeI	GAWTC	3 cut(s)	66, 344, 368
PkrI	GCNGC	1 cut(s)	40
PshBI	ATTAAT	1 cut(s)	459
PspPI	GGNCC	2 cut(s)	22, 36
RsaI	GTAC	2 cut(s)	108, 174
RsaNI	GTAC	2 cut(s)	107, 173
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	305, 459
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	22, 36
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	6 cut(s)	105, 151, 240, 259, 340, 353
SfaNI	GCATC	1 cut(s)	109
SgrAI	CRCCGGYG	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	5 cut(s)	58, 86, 390, 399, 460
SsiI	CCGC	2 cut(s)	12, 39
SspMI	CTAG	3 cut(s)	74, 104, 299
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	143, 210
TasI	AATT	5 cut(s)	58, 86, 390, 399, 460
TatI	WGTACW	1 cut(s)	172
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	3 cut(s)	66, 344, 368
Tru1I	TTAA	2 cut(s)	305, 459
Tru9I	TTAA	2 cut(s)	305, 459
TscAI	CASTG	1 cut(s)	295
TspRI	CASTG	1 cut(s)	295
VspI	ATTAAT	1 cut(s)	459
XapI	RAATTY	3 cut(s)	58, 86, 399
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XspI	CTAG	3 cut(s)	74, 104, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.