Rh7DG075700

V-type proton ATPase catalytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003036
Physical Location & Seq
Forward (+)
5893374 .. 5917588
24215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG075700.1

Sequence Viewer

Length: 795 bp
ATGGGTTGGCATCAAAACGATGAAAAATATCTGGCCCTTCCTTTGTACCTTGATGAAATCTTTCACCCTGTTGTTGCCGTTTTGATGTCTATAACATTTGTTCTAATCTTCAGAGAGGTTCTTGATCTTGCTGGAAAGGGAGGTGAACTAACACATGACAACCATTACAGTGGAGCGGTAGATTTAACTGAAGAGACTGCCAAGGAGGCTATGACACCTATTGAATCAAGATTGTGCTTGGATGTTGATTCAAATTTAGACTGGGAAGCAATTGGGAAAATTCTTGCACGTCTTGTAGGAAAGGGTGCTTTAGCTGAAGGAGACAAGATCACCTTAGAAACTGCAAAGCTGTTGAGAGAGAATTCTCTCGCGCAAGATGCATTTACTCCGGTGGACAGATATGATAAATTCTGCCCTTTCTACAGGTCTGTTTGGATGATGCAGAATATCATCCATTTCTTTAATTTAGCAAATCAGCGGAAGCCGGTGAATCAGAAGAAGCCCTTGATCTCAGACCAATTTAGACCCGATCCTTCAATGTCCATTACTACGCGGAGGTCCAAAACATCACAGCGCACTCGCATTGGTACTGCATTGCTCAGACTTGTTTGGTTTGCAATAGCGATCCTAAGCTTGATGTCAACTATTCTGAAAATCAAGTATACCTCTACAGTTGCATCTTTTGCGGTCTCCGATGAATTGTTACAACTTCCACTTAAAGGCTGCTGCAGTGTCATCAGTTTATCAAGTTCCTCCCTTATGCTGCAGGCTTCAGCATCTATTCTGAGGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0002020 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0006996 GO:0007030 GO:0007275 GO:0008150 GO:0008324 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010256 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019899 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034220 GO:0036442 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0046961 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N ATP-synt_ab_Xtn

Protein Analysis

264

Amino Acids

29.56

Weight (kDa)

7.68

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_VA_C PF22919 95 - 155 1e-10 C-terminal domain of V and A type ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 176
AccI GTMKAC 1 cut(s) 662
AccII CGCG 2 cut(s) 371, 553
AciI CCGC 4 cut(s) 176, 478, 553, 686
AclWI GGATC 2 cut(s) 524, 619
AcsI RAATTY 4 cut(s) 253, 279, 361, 407
AcuI CTGAAG 4 cut(s) 94, 210, 336, 756
AfaI GTAC 2 cut(s) 47, 589
AfiI CCNNNNNNNGG 1 cut(s) 719
AgsI TTSAA 3 cut(s) 224, 252, 537
AjiI CACGTC 1 cut(s) 290
AluBI AGCT 3 cut(s) 314, 349, 633
AluI AGCT 3 cut(s) 314, 349, 633
Alw26I GTCTC 3 cut(s) 188, 315, 694
AlwI GGATC 2 cut(s) 524, 619
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 723, 726, 763
ApoI RAATTY 4 cut(s) 253, 279, 361, 407
Asp700I GAANNNNTTC 1 cut(s) 60
AspLEI GCGC 2 cut(s) 373, 576
AspS9I GGNCC 2 cut(s) 34, 558
AsuHPI GGTGA 4 cut(s) 56, 155, 322, 499
AvaII GGWCC 1 cut(s) 558
BbvI GCAGC 3 cut(s) 710, 713, 750
BceAI ACGGC 1 cut(s) 62
BcoDI GTCTC 3 cut(s) 188, 315, 694
BfmI CTRYAG 4 cut(s) 421, 669, 727, 764
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 3 cut(s) 724, 727, 764
BlsI GCNGC 3 cut(s) 725, 728, 765
Bme18I GGWCC 1 cut(s) 558
BmgBI CACGTC 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 34, 558
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 5 cut(s) 19, 367, 429, 686, 785
BmuI ACTGGG 1 cut(s) 271
Bpu10I CCTNAGC 1 cut(s) 629
BsaI GGTCTC 1 cut(s) 694
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 388
Bsc4I CCNNNNNNNGG 1 cut(s) 719
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 266
Bse3DI GCAATG 1 cut(s) 593
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 3 cut(s) 247, 441, 450
BseLI CCNNNNNNNGG 1 cut(s) 719
BseMI GCAATG 1 cut(s) 593
BseMII CTCAG 3 cut(s) 525, 613, 776
BseNI ACTGG 1 cut(s) 266
BseXI GCAGC 3 cut(s) 710, 713, 750
Bsh1236I CGCG 2 cut(s) 371, 553
BshFI GGCC 1 cut(s) 35
BsiSI CCGG 2 cut(s) 389, 485
BslI CCNNNNNNNGG 1 cut(s) 719
BsmAI GTCTC 3 cut(s) 188, 315, 694
BsnI GGCC 1 cut(s) 35
Bso31I GGTCTC 1 cut(s) 694
Bsp143I GATC 5 cut(s) 124, 327, 507, 529, 624
BspACI CCGC 4 cut(s) 176, 478, 553, 686
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 3 cut(s) 524, 612, 777
BspFNI CGCG 2 cut(s) 371, 553
BspMAI CTGCAG 2 cut(s) 731, 768
BspPI GGATC 2 cut(s) 524, 619
BspTNI GGTCTC 1 cut(s) 694
BsrBI CCGCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 593
BsrFI RCCGGY 1 cut(s) 484
BsrI ACTGG 1 cut(s) 266
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 5 cut(s) 124, 327, 507, 529, 624
BssNAI GTATAC 1 cut(s) 663
BssT1I CCWWGG 1 cut(s) 201
Bst1107I GTATAC 1 cut(s) 663
Bst4CI ACNGT 2 cut(s) 170, 673
Bst6I CTCTTC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 683
BstC8I GCNNGC 1 cut(s) 768
BstDEI CTNAG 5 cut(s) 334, 511, 599, 629, 785
BstF5I GGATG 3 cut(s) 247, 441, 450
BstFNI CGCG 2 cut(s) 371, 553
BstHHI GCGC 2 cut(s) 373, 576
BstKTI GATC 5 cut(s) 127, 330, 510, 532, 627
BstMAI GTCTC 3 cut(s) 188, 315, 694
BstMBI GATC 5 cut(s) 124, 327, 507, 529, 624
BstMWI GCNNNNNNNGC 3 cut(s) 206, 377, 683
BstSFI CTRYAG 4 cut(s) 421, 669, 727, 764
BstUI CGCG 2 cut(s) 371, 553
BstV1I GCAGC 3 cut(s) 710, 713, 750
BstXI CCANNNNNNTGG 1 cut(s) 170
BstZ17I GTATAC 1 cut(s) 663
BsuRI GGCC 1 cut(s) 35
BtrI CACGTC 1 cut(s) 290
BtsCI GGATG 3 cut(s) 247, 441, 450
BtsI GCAGTG 1 cut(s) 736
BtsIMutI CAGTG 2 cut(s) 175, 736
Cac8I GCNNGC 1 cut(s) 768
CfoI GCGC 2 cut(s) 373, 576
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 2 cut(s) 34, 558
Csp6I GTAC 2 cut(s) 46, 588
CviAII CATG 1 cut(s) 155
CviJI RGCY 9 cut(s) 35, 209, 314, 349, 484, 502, 633, 723, 770
CviKI_1 RGCY 9 cut(s) 35, 209, 314, 349, 484, 502, 633, 723, 770
CviQI GTAC 2 cut(s) 46, 588
DdeI CTNAG 5 cut(s) 334, 511, 599, 629, 785
DpnI GATC 5 cut(s) 126, 329, 509, 531, 626
DpnII GATC 5 cut(s) 124, 327, 507, 529, 624
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 694
Eco47I GGWCC 1 cut(s) 558
Eco57I CTGAAG 4 cut(s) 94, 210, 336, 756
EcoRI GAATTC 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 1 cut(s) 158
FaiI YATR 7 cut(s) 92, 156, 212, 402, 663, 761, 793
FalI AAGNNNNNCTT 4 cut(s) 317, 349, 488, 520
FatI CATG 1 cut(s) 154
FblI GTMKAC 1 cut(s) 662
Fnu4HI GCNGC 3 cut(s) 724, 727, 764
FokI GGATG 3 cut(s) 254, 437, 448
Fsp4HI GCNGC 3 cut(s) 724, 727, 764
GlaI GCGC 2 cut(s) 372, 575
GluI GCNGC 3 cut(s) 724, 727, 764
HaeIII GGCC 1 cut(s) 35
HapII CCGG 2 cut(s) 389, 485
HhaI GCGC 2 cut(s) 373, 576
Hin1II CATG 1 cut(s) 158
Hin6I GCGC 2 cut(s) 371, 574
HinP1I GCGC 2 cut(s) 371, 574
HincII GTYRAC 1 cut(s) 642
HindII GTYRAC 1 cut(s) 642
HindIII AAGCTT 1 cut(s) 631
HinfI GANTC 3 cut(s) 224, 248, 490
HpaII CCGG 2 cut(s) 389, 485
HphI GGTGA 4 cut(s) 56, 155, 322, 499
Hpy166II GTNNAC 4 cut(s) 146, 394, 642, 663
Hpy188I TCNGA 7 cut(s) 113, 495, 514, 602, 651, 694, 786
Hpy188III TCNNGA 2 cut(s) 122, 228
Hpy8I GTNNAC 4 cut(s) 146, 394, 642, 663
HpyAV CCTTC 3 cut(s) 47, 311, 543
HpyCH4III ACNGT 2 cut(s) 170, 673
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 9 cut(s) 287, 344, 380, 442, 593, 617, 677, 729, 766
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 377, 683
HpyF3I CTNAG 5 cut(s) 334, 511, 599, 629, 785
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 1 cut(s) 158
HspAI GCGC 2 cut(s) 371, 574
Kzo9I GATC 5 cut(s) 124, 327, 507, 529, 624
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 8 cut(s) 17, 81, 117, 247, 402, 409, 498, 752
Lsp1109I GCAGC 3 cut(s) 710, 713, 750
LweI GCATC 5 cut(s) 19, 367, 429, 686, 785
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 702
MalI GATC 5 cut(s) 126, 329, 509, 531, 626
MbiI CCGCTC 1 cut(s) 176
MboI GATC 5 cut(s) 124, 327, 507, 529, 624
MboII GAAGA 3 cut(s) 100, 203, 508
MfeI CAATTG 1 cut(s) 270
MluCI AATT 8 cut(s) 253, 270, 279, 361, 407, 463, 518, 698
MnlI CCTC 7 cut(s) 109, 134, 199, 549, 676, 763, 780
Mph1103I ATGCAT 1 cut(s) 382
MroXI GAANNNNTTC 1 cut(s) 60
MseI TTAA 3 cut(s) 185, 462, 717
MslI CAYNNNNRTG 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 478
MspI CCGG 2 cut(s) 389, 485
MunI CAATTG 1 cut(s) 270
MvnI CGCG 2 cut(s) 371, 553
MwoI GCNNNNNNNGC 3 cut(s) 206, 377, 683
NdeII GATC 5 cut(s) 124, 327, 507, 529, 624
NlaIII CATG 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 3 cut(s) 224, 248, 490
PkrI GCNGC 3 cut(s) 725, 728, 765
PspPI GGNCC 2 cut(s) 34, 558
PstI CTGCAG 2 cut(s) 731, 768
RsaI GTAC 2 cut(s) 47, 589
RsaNI GTAC 2 cut(s) 46, 588
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 3 cut(s) 185, 462, 717
SatI GCNGC 3 cut(s) 724, 727, 764
Sau3AI GATC 5 cut(s) 124, 327, 507, 529, 624
Sau96I GGNCC 2 cut(s) 34, 558
SfaNI GCATC 5 cut(s) 19, 367, 429, 686, 785
SfcI CTRYAG 4 cut(s) 421, 669, 727, 764
SinI GGWCC 1 cut(s) 558
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 8 cut(s) 253, 270, 279, 361, 407, 463, 518, 698
SsiI CCGC 4 cut(s) 176, 478, 553, 686
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 170, 673
TaiI ACGT 1 cut(s) 292
TasI AATT 8 cut(s) 253, 270, 279, 361, 407, 463, 518, 698
TfiI GAWTC 3 cut(s) 224, 248, 490
Tru1I TTAA 3 cut(s) 185, 462, 717
Tru9I TTAA 3 cut(s) 185, 462, 717
TscAI CASTG 2 cut(s) 175, 736
TseI GCWGC 3 cut(s) 723, 726, 763
TspDTI ATGAA 3 cut(s) 36, 69, 711
TspRI CASTG 2 cut(s) 175, 736
VpaK11BI GGWCC 1 cut(s) 558
XapI RAATTY 4 cut(s) 253, 279, 361, 407
XmiI GTMKAC 1 cut(s) 662
XmnI GAANNNNTTC 1 cut(s) 60
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.