Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003036

Physical Location & Seq

Genomic Coordinates Reverse (-)

80272567 .. 80274644

Gene Structure 2078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G052300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGGTTGGCATCAAAACCACGAAAAATATCTGGCCCTTCCTTTATACCTTGATGAAATCTTTCGCCCTGTTGTTGCCGTTTTACTGTCTGTAACATTTGTTCTAATCTTCAGAGAGGTTCTTGATCTTGTACTTGGACATGGAGATGATTTGTTCAGGCGAGCACAGTCGAAAGCCCTCGTCTCTATTCACGACCTTGAGACTGCCAAGGAGGCTATGACACCTATTGAATCAAGATTGTGCTTGGATGCTGATTCAAAGTTAGAGTGGAAAGCAATTGGGAAAATTCTTGCACGTGTTAGAATGTGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

DUF21

Protein Analysis

104

Amino Acids

11.89

Weight (kDa)

6.4

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14240
fragaria_vesca	FvH4_3g26400 FvH4_6g45191
pyrus_communis	pycom13g17170
rosa_chinensis	RchiOBHm_Chr1g0336241 RchiOBHm_Chr3g0495991 RchiOBHm_Chr4g0407181 RchiOBHm_Chr4g0426961 RchiOBHm_Chr4g0434571 RchiOBHm_Chr5g0063671
rosa_multiflora	Rmu_co8070196.1_g000001 Rmu_sc0008896.1_g000001 Rmu_sc0034900.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077390
rosa_rugosa	Rorug05G0573900
rosa_samantha	Rh2AG514100 Rh2CG499000 Rh3CG243400 Rh4BG017300 Rh4CG442300 Rh4DG073900 Rh5AG071200 Rh5CG080000 Rh5DG067700 Rh5DG434300 Rh5DG445700 Rh6AG091300 Rh6CG078900 Rh6DG074700 Rh7CG413500 Rh7DG075700 Rh7DG349600
rosa_wichuraiana	Rw2G052300 Rw3G019460 Rw5G006650 Rw5G010740 Rw7G003450 Rw7G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	94
AcvI	CACGTG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	132
AflIII	ACRYGT	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	230, 258
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	2 cut(s)	187, 194
AoxI	GGCC	1 cut(s)	33
ApoI	RAATTY	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	34
BbrPI	CACGTG	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	187, 194
BglI	GCCNNNNNGGC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	34
BmsI	GCATC	2 cut(s)	19, 238
BpuEI	CTTGAG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	253
BshFI	GGCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	187, 194
BsmBI	CGTCTC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	124
BspANI	GGCC	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	87, 168
BstBAI	YACGTR	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	2 cut(s)	187, 194
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	3 cut(s)	35, 176, 215
CviKI_1	RGCY	3 cut(s)	35, 176, 215
CviQI	GTAC	1 cut(s)	131
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	94
Eco72I	CACGTG	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	1 cut(s)	143
FaiI	YATR	3 cut(s)	46, 141, 218
FatI	CATG	1 cut(s)	139
FokI	GGATG	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	143
HinfI	GANTC	2 cut(s)	230, 254
Hpy188I	TCNGA	1 cut(s)	113
Hpy188III	TCNNGA	3 cut(s)	122, 191, 234
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	87, 168
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	124
LpnPI	CCDG	3 cut(s)	17, 81, 142
LweI	GCATC	2 cut(s)	19, 238
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	1 cut(s)	100
MfeI	CAATTG	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	2 cut(s)	276, 285
MnlI	CCTC	3 cut(s)	109, 188, 205
MroXI	GAANNNNTTC	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	230, 254
PmaCI	CACGTG	1 cut(s)	296
PmlI	CACGTG	1 cut(s)	296
Ppu21I	YACGTR	1 cut(s)	296
PspCI	CACGTG	1 cut(s)	296
PspPI	GGNCC	1 cut(s)	34
PsrI	GAACNNNNNNTAC	2 cut(s)	84, 116
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	5 cut(s)	51, 120, 198, 226, 298
SfaNI	GCATC	2 cut(s)	19, 238
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	276, 285
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	87, 168
TaiI	ACGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	170
TasI	AATT	2 cut(s)	276, 285
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	2 cut(s)	230, 254
TspDTI	ATGAA	1 cut(s)	69
XapI	RAATTY	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.