Rh5DG067700

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003036
Physical Location & Seq
Forward (+)
5866770 .. 5870258
3489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG067700.1

Sequence Viewer

Length: 387 bp
ATGATTAAAGGAAGGACAACACTTGGACCAATCTTCAATCCGAGTAGGAAAAGTAGGCCCTTCCTTCTAATTTTGAGAGAGGTTCTTGATCTTGTACTTGGACATGGAAATGATTTGTTCAGGCGAGCACAGTTGAAAGCCCTCATCTCTATTCACGACCTTCAGGCTGGAAAGGGAGGTGAACTAACACATGATAAGACAACGATTATCAGTGGAGCGCTAGATTTAACTGAAAAGACTGCCAAGGAGGCTATAACACCTATTGAATCAAGGTTGTGCTTGGATGTTGATTCAAAGTTAGACTGCGAAGCAATTGAGAAAATTCTTGCACATAACTGGTATATGGTAGGAAGAGAGAAGACCATTATAGTAGTGGTGATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
DUF21

Protein Analysis

128

Amino Acids

14.24

Weight (kDa)

8.62

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 321
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 1 cut(s) 96
AfeI AGCGCT 1 cut(s) 219
AgsI TTSAA 4 cut(s) 37, 136, 266, 294
Alw21I GWGCWC 1 cut(s) 130
Aor51HI AGCGCT 1 cut(s) 219
AoxI GGCC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 321
AseI ATTAAT 1 cut(s) 381
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 2 cut(s) 26, 57
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 130
BfaI CTAG 1 cut(s) 221
BfoI RGCGCY 1 cut(s) 221
BglI GCCNNNNNGGC 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 26, 57
BpiI GAAGAC 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 289
BseNI ACTGG 1 cut(s) 341
BshFI GGCC 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 130
BsnI GGCC 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 88
BspANI GGCC 1 cut(s) 58
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 346
BstC8I GCNNGC 1 cut(s) 126
BstF5I GGATG 1 cut(s) 289
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstV2I GAAGAC 1 cut(s) 365
BsuRI GGCC 1 cut(s) 58
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 126
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 26, 57
Csp6I GTAC 1 cut(s) 95
CviAII CATG 2 cut(s) 104, 191
CviJI RGCY 4 cut(s) 58, 140, 167, 251
CviKI_1 RGCY 4 cut(s) 58, 140, 167, 251
CviQI GTAC 1 cut(s) 95
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 26
Eco47III AGCGCT 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 107, 194
FaiI YATR 7 cut(s) 105, 192, 254, 333, 342, 344, 368
FatI CATG 2 cut(s) 103, 190
FokI GGATG 1 cut(s) 296
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 219
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 1 cut(s) 58
HhaI GCGC 1 cut(s) 220
Hin1II CATG 2 cut(s) 107, 194
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 2 cut(s) 266, 290
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 2 cut(s) 86, 155
Hpy8I GTNNAC 1 cut(s) 182
HpyAV CCTTC 4 cut(s) 6, 70, 74, 170
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
Hsp92II CATG 2 cut(s) 107, 194
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 4 cut(s) 106, 149, 153, 322
MaeI CTAG 1 cut(s) 221
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 25, 363, 370
MfeI CAATTG 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 4 cut(s) 69, 312, 321, 382
MnlI CCTC 4 cut(s) 73, 152, 170, 241
MseI TTAA 3 cut(s) 6, 227, 381
MslI CAYNNNNRTG 1 cut(s) 108
MunI CAATTG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 1 cut(s) 88
NlaIII CATG 2 cut(s) 107, 194
PfeI GAWTC 2 cut(s) 266, 290
PshBI ATTAAT 1 cut(s) 381
PspPI GGNCC 2 cut(s) 26, 57
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 3 cut(s) 6, 227, 381
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 2 cut(s) 26, 57
SduI GDGCHC 1 cut(s) 130
SetI ASST 5 cut(s) 84, 162, 181, 262, 275
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 108
Sse9I AATT 4 cut(s) 69, 312, 321, 382
SspMI CTAG 1 cut(s) 221
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 132
TasI AATT 4 cut(s) 69, 312, 321, 382
TatI WGTACW 1 cut(s) 94
TfiI GAWTC 2 cut(s) 266, 290
Tru1I TTAA 3 cut(s) 6, 227, 381
Tru9I TTAA 3 cut(s) 6, 227, 381
TscAI CASTG 1 cut(s) 217
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 26
VspI ATTAAT 1 cut(s) 381
XapI RAATTY 1 cut(s) 321
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.