Rh7CG413500

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003036
Physical Location & Seq
Forward (+)
53079189 .. 53080371
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG413500.1

Sequence Viewer

Length: 384 bp
ATGGTTATTCCACAAGCAATATGCATTAGATATGGATTTGCTGTGGGTTCCAACTTTGTATGGCTTGTCCGAATTTTGATGATTATTTGCTACCCAATGGCTTATTCAATTGGAAAGATATTGAACTCTGTTATGGAACATAATGAAGCATTATTTAGGCGAGCTCAGTTTAAAGCCCTCGTCTCCATCCAAAGCAAAGAGATTGCTTCAGAAGGACTCAAGCAGAGAGTATTTGAGACATCACTTGTTGATCGTCAGGGAGATGAGGGGCATGCTTACAGAAAAATGCGGTTGAGATCAGCTCAGATTATCCCAAGATTGTTTTTGCTTGCTATGGATTTCTCTTTGCTTGAAAGCAAATTTTATATGATGTACAATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

127

Amino Acids

14.76

Weight (kDa)

9.69

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 2 - 67 7.7e-09 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 289
AcsI RAATTY 2 cut(s) 72, 359
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 1 cut(s) 374
AgsI TTSAA 3 cut(s) 108, 124, 353
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 2 cut(s) 164, 302
AluI AGCT 2 cut(s) 164, 302
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 2 cut(s) 187, 230
ApoI RAATTY 2 cut(s) 72, 359
BanII GRGCYC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 166
BccI CCATC 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 187, 230
BmiI GGNNCC 1 cut(s) 49
BplI GAGNNNNNCTC 2 cut(s) 286, 318
BpuEI CTTGAG 1 cut(s) 203
BseGI GGATG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 179, 317
BsiHKAI GWGCWC 1 cut(s) 166
BsmAI GTCTC 2 cut(s) 187, 230
BsmBI CGTCTC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 166
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 2 cut(s) 250, 296
BspACI CCGC 1 cut(s) 289
BspCNI CTCAG 2 cut(s) 178, 316
BspLI GGNNCC 1 cut(s) 49
BsrGI TGTACA 1 cut(s) 372
BssMI GATC 2 cut(s) 250, 296
BstAUI TGTACA 1 cut(s) 372
BstC8I GCNNGC 3 cut(s) 162, 273, 330
BstDEI CTNAG 2 cut(s) 165, 303
BstF5I GGATG 1 cut(s) 186
BstKTI GATC 2 cut(s) 253, 299
BstMAI GTCTC 2 cut(s) 187, 230
BstMBI GATC 2 cut(s) 250, 296
BstNSI RCATGY 1 cut(s) 275
BtsCI GGATG 1 cut(s) 186
Cac8I GCNNGC 3 cut(s) 162, 273, 330
Csp6I GTAC 1 cut(s) 373
CviAII CATG 1 cut(s) 272
CviJI RGCY 5 cut(s) 64, 101, 164, 176, 302
CviKI_1 RGCY 5 cut(s) 64, 101, 164, 176, 302
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 2 cut(s) 165, 303
DpnI GATC 2 cut(s) 252, 298
DpnII GATC 2 cut(s) 250, 296
DraI TTTAAA 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 166
Eco53kI GAGCTC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 164
EcoT22I ATGCAT 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 1 cut(s) 275
FaiI YATR 9 cut(s) 22, 33, 61, 134, 141, 273, 335, 366, 368
FatI CATG 1 cut(s) 271
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 1 cut(s) 166
Hin1II CATG 1 cut(s) 275
HinfI GANTC 1 cut(s) 216
Hpy188I TCNGA 3 cut(s) 71, 211, 306
HpyAV CCTTC 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 24
HpyF3I CTNAG 2 cut(s) 165, 303
Hsp92II CATG 1 cut(s) 275
Kzo9I GATC 2 cut(s) 250, 296
LpnPI CCDG 1 cut(s) 242
MalI GATC 2 cut(s) 252, 298
MboI GATC 2 cut(s) 250, 296
MfeI CAATTG 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 3 cut(s) 72, 108, 359
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 2 cut(s) 188, 259
Mph1103I ATGCAT 1 cut(s) 26
MseI TTAA 1 cut(s) 171
MunI CAATTG 1 cut(s) 108
NdeII GATC 2 cut(s) 250, 296
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 26
NspI RCATGY 1 cut(s) 275
PaeI GCATGC 1 cut(s) 275
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 49
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SacI GAGCTC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 171
Sau3AI GATC 2 cut(s) 250, 296
SchI GAGTC 1 cut(s) 210
SduI GDGCHC 1 cut(s) 166
SetI ASST 2 cut(s) 166, 304
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SphI GCATGC 1 cut(s) 275
Sse9I AATT 3 cut(s) 72, 108, 359
SsiI CCGC 1 cut(s) 289
SstI GAGCTC 1 cut(s) 166
TasI AATT 3 cut(s) 72, 108, 359
TatI WGTACW 1 cut(s) 372
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 159
XapI RAATTY 2 cut(s) 72, 359
XceI RCATGY 1 cut(s) 275
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.