Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008896.1

Orthogroup ID

OG0003036

Physical Location & Seq

Genomic Coordinates Reverse (-)

9702 .. 11264

Gene Structure 1563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008896.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atggtgaaacaagccgggtctaatggtattttcgctgtgaaaatatctccataccccagcttcattgaagttcttgatcttgtacttggacatggagatgatttgttcaggcgagcacggtcgaaagccctcgtctctattcacgaccttgaggctggaaaggggggtgaactaacacatgacaacgattacagtggagcgctagatttaactgaaaaggtgcctaatgatttcaagcaagtgttctatacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

DUF21

Protein Analysis

84

Amino Acids

9.22

Weight (kDa)

5.44

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14240
fragaria_vesca	FvH4_3g26400 FvH4_6g45191
pyrus_communis	pycom13g17170
rosa_chinensis	RchiOBHm_Chr1g0336241 RchiOBHm_Chr3g0495991 RchiOBHm_Chr4g0407181 RchiOBHm_Chr4g0426961 RchiOBHm_Chr4g0434571 RchiOBHm_Chr5g0063671
rosa_multiflora	Rmu_co8070196.1_g000001 Rmu_sc0008896.1_g000001 Rmu_sc0034900.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077390
rosa_rugosa	Rorug05G0573900
rosa_samantha	Rh2AG514100 Rh2CG499000 Rh3CG243400 Rh4BG017300 Rh4CG442300 Rh4DG073900 Rh5AG071200 Rh5CG080000 Rh5DG067700 Rh5DG434300 Rh5DG445700 Rh6AG091300 Rh6CG078900 Rh6DG074700 Rh7CG413500 Rh7DG075700 Rh7DG349600
rosa_wichuraiana	Rw2G052300 Rw3G019460 Rw5G006650 Rw5G010740 Rw7G003450 Rw7G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AfaI	GTAC	1 cut(s)	84
AfeI	AGCGCT	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	68, 235
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	139
Aor51HI	AGCGCT	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	202
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	16, 179
BanI	GGYRCC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	1 cut(s)	203
BfoI	RGCGCY	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	56
Bsh1285I	CGRYCG	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	220
BsiEI	CGRYCG	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	139
BsmBI	CGTCTC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	220
BssMI	GATC	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	120, 194
BstC8I	GCNNGC	1 cut(s)	114
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	76
BstMCI	CGRYCG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	114
CfoI	GCGC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	2 cut(s)	92, 179
CviJI	RGCY	4 cut(s)	14, 60, 128, 155
CviKI_1	RGCY	4 cut(s)	14, 60, 128, 155
CviQI	GTAC	1 cut(s)	83
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eco47III	AGCGCT	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	2 cut(s)	95, 182
FaiI	YATR	4 cut(s)	52, 93, 180, 249
FatI	CATG	2 cut(s)	91, 178
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	201
GsaI	CCCAGC	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	203
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	2 cut(s)	95, 182
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	2 cut(s)	16, 179
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188III	TCNNGA	2 cut(s)	74, 143
Hpy8I	GTNNAC	1 cut(s)	170
HpyCH4III	ACNGT	2 cut(s)	120, 194
Hsp92II	CATG	2 cut(s)	95, 182
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	4 cut(s)	28, 70, 94, 141
MaeI	CTAG	1 cut(s)	203
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	118
MnlI	CCTC	2 cut(s)	140, 145
MseI	TTAA	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	16
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	95, 182
NlaIV	GGNNCC	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	222
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	209
Sau3AI	GATC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	3 cut(s)	62, 150, 222
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	2 cut(s)	120, 194
TaqI	TCGA	1 cut(s)	122
TatI	WGTACW	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TscAI	CASTG	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	199
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.