Rh2CG499000

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003036
Physical Location & Seq
Reverse (-)
67127162 .. 67128677
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG499000.1

Sequence Viewer

Length: 351 bp
ATGCTCAAGATATGGGCTTTCTGTTGGCTTGTTCACATTCTGATGATCATCTGCTATCCAATCGCCTACCCAATTGGAAAAGTTCTTGATCTTGTACTTGGACATGGAGATGATTTGTTCAGGCGAGCACAGCTGAAAGCCCTCGCCTCTATTCACAACCTTGAGGCTGGAAGGGGAGGTGAACTAACACATGATAAGACAACGATTATCAGTGGAGCGCTAGATTTAACTGAAAAGACTGCCAAGGAGGCTATGACACCTATTGAATCAAGATTGTGCTTGGATGTTGATTCAAAGTTAGACTGGGAAGCAATTGGGAAAATTCTTACACGTGTTAGAATGTGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
DUF21

Protein Analysis

116

Amino Acids

12.98

Weight (kDa)

6.88

Isoelectric Point (pI)

31.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 321
AcvI CACGTG 1 cut(s) 332
AfaI GTAC 1 cut(s) 96
AfeI AGCGCT 1 cut(s) 219
AflIII ACRYGT 2 cut(s) 329, 331
AgsI TTSAA 2 cut(s) 266, 294
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 130
Aor51HI AGCGCT 1 cut(s) 219
ApoI RAATTY 1 cut(s) 321
AspLEI GCGC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 191
BbrPI CACGTG 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 130
BclI TGATCA 1 cut(s) 45
BfaI CTAG 1 cut(s) 221
BfoI RGCGCY 1 cut(s) 221
BglI GCCNNNNNGGC 1 cut(s) 248
BmrI ACTGGG 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 313
BpuEI CTTGAG 1 cut(s) 182
BsaAI YACGTR 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 308
Bse8I GATNNNNATC 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 289
BseJI GATNNNNATC 1 cut(s) 47
BseNI ACTGG 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 2 cut(s) 45, 88
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 2 cut(s) 45, 88
BssT1I CCWWGG 1 cut(s) 243
BstBAI YACGTR 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 126
BstF5I GGATG 1 cut(s) 289
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 2 cut(s) 48, 91
BstMBI GATC 2 cut(s) 45, 88
BstMWI GCNNNNNNNGC 2 cut(s) 130, 248
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 126
CfoI GCGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 95
CviAII CATG 2 cut(s) 104, 191
CviJI RGCY 6 cut(s) 17, 28, 133, 140, 167, 251
CviKI_1 RGCY 6 cut(s) 17, 28, 133, 140, 167, 251
CviQI GTAC 1 cut(s) 95
DpnI GATC 2 cut(s) 47, 90
DpnII GATC 2 cut(s) 45, 88
Eco130I CCWWGG 1 cut(s) 243
Eco47III AGCGCT 1 cut(s) 219
Eco72I CACGTG 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 107, 194
FaiI YATR 4 cut(s) 13, 105, 192, 254
FatI CATG 2 cut(s) 103, 190
FbaI TGATCA 1 cut(s) 45
FokI GGATG 1 cut(s) 296
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 219
HaeII RGCGCY 1 cut(s) 221
HhaI GCGC 1 cut(s) 220
Hin1II CATG 2 cut(s) 107, 194
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 2 cut(s) 266, 290
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 2 cut(s) 34, 182
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 3 cut(s) 7, 86, 270
Hpy8I GTNNAC 2 cut(s) 34, 182
HpyAV CCTTC 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 248
HpySE526I ACGT 1 cut(s) 331
Hsp92II CATG 2 cut(s) 107, 194
HspAI GCGC 1 cut(s) 218
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 2 cut(s) 45, 88
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 3 cut(s) 106, 153, 289
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 331
MalI GATC 2 cut(s) 47, 90
MboI GATC 2 cut(s) 45, 88
MfeI CAATTG 2 cut(s) 72, 312
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 3 cut(s) 72, 312, 321
MnlI CCTC 5 cut(s) 152, 157, 157, 170, 241
MseI TTAA 1 cut(s) 227
MslI CAYNNNNRTG 2 cut(s) 41, 108
MspA1I CMGCKG 1 cut(s) 133
MunI CAATTG 2 cut(s) 72, 312
MwoI GCNNNNNNNGC 2 cut(s) 130, 248
NdeII GATC 2 cut(s) 45, 88
NlaIII CATG 2 cut(s) 107, 194
PfeI GAWTC 2 cut(s) 266, 290
PmaCI CACGTG 1 cut(s) 332
PmlI CACGTG 1 cut(s) 332
Ppu21I YACGTR 1 cut(s) 332
PspCI CACGTG 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
RseI CAYNNNNRTG 2 cut(s) 41, 108
SaqAI TTAA 1 cut(s) 227
Sau3AI GATC 2 cut(s) 45, 88
SduI GDGCHC 1 cut(s) 130
SetI ASST 5 cut(s) 135, 162, 181, 262, 334
SmiMI CAYNNNNRTG 2 cut(s) 41, 108
SmlI CTYRAG 2 cut(s) 5, 161
SmoI CTYRAG 2 cut(s) 5, 161
Sse9I AATT 3 cut(s) 72, 312, 321
SspMI CTAG 1 cut(s) 221
StyI CCWWGG 1 cut(s) 243
TaiI ACGT 1 cut(s) 334
TasI AATT 3 cut(s) 72, 312, 321
TatI WGTACW 1 cut(s) 94
TfiI GAWTC 2 cut(s) 266, 290
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 1 cut(s) 217
TspRI CASTG 1 cut(s) 217
XapI RAATTY 1 cut(s) 321
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.