Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Reverse (-)

22050554 .. 22051580

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28951.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCGAGCACCTACAACAACAACAGTAACAGTAATTACAGCATATATGTGACGGCTCATACCGGAGGTCACCCGGAACGCGAAAAGCTGGAAAGTCCTCGTGTCTCAAATTCTTGGAATGTCATCAGAAGTTCCAAGTCAGAGAATCCCAGCTTCAGGTGGTCGATCGAAGACTACAATTCAATGCACTCAAATCACGATGTGTTTGCGTCAATAGCATCTACCGATCATGATTATATGTCACCTCAATCGCGGGAGATTGTCTCCAGGATGATATCTCGTATAAACTTCCCCTTTGAATTAGAAAAGCTAAACTGGAAAGGTTTCGGTAACGTAGTAAAGCCACTAAACAACATTGATGATATGATAACCCACATACTTGAAGTCATTAACGGCATGGTTGTCAAGGGACGCAAGAAGGTGGACTTAAATGTCAGAGTTGATATGCAGTATACATTACCGCATGGAGAATATGAAGCAAAAGAAACGATTATGCATGATCCAAGACTGTTGGAGATGGAGGCTGCTATTGCGGAGTCATTTGATCAATCAGTATTCAAGTCGAGGCCTGCAAGCAAGGCATCGGTTGAGGCATTGAAGAAGTTGGTGTTGAAAGATAATCGAGATGGTGGTTCGAGTTTAATGTGTGTGATTTGCCAGGAAGAAATGCTGTCTGGTTCTGAAGTCATTCGCTTGCCATGTTCCAAATTCCATATGTTACCTGGAGACTGCATCATAAAATGGCTAAACCGCTTTGGTCATACCTGTCCTATTTGTAAGTTCAAGCTGCCAAGAGAGAAAAAACCTGGAGGCGAAAGAACCAAAAGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

278

Amino Acids

31.6

Weight (kDa)

8.65

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	215 - 260	7.5e-09	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	431
AccI	GTMKAC	1 cut(s)	452
AccII	CGCG	2 cut(s)	81, 253
AciI	CCGC	4 cut(s)	253, 461, 533, 751
AclWI	GGATC	1 cut(s)	494
AcsI	RAATTY	2 cut(s)	109, 707
AcuI	CTGAAG	2 cut(s)	139, 702
AdeI	CACNNNGTG	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	7 cut(s)	183, 299, 383, 559, 598, 613, 784
AjnI	CCWGG	4 cut(s)	266, 657, 721, 805
AluBI	AGCT	4 cut(s)	88, 153, 310, 787
AluI	AGCT	4 cut(s)	88, 153, 310, 787
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	3 cut(s)	109, 268, 720
AlwI	GGATC	1 cut(s)	494
AoxI	GGCC	1 cut(s)	566
ApeKI	GCWGC	2 cut(s)	524, 787
ApoI	RAATTY	2 cut(s)	109, 707
Asp700I	GAANNNNTTC	2 cut(s)	323, 687
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	62, 234
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	511, 774
BccI	CCATC	2 cut(s)	511, 620
BceAI	ACGGC	2 cut(s)	69, 409
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	4 cut(s)	268, 659, 723, 807
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	3 cut(s)	109, 268, 720
BisI	GCNGC	2 cut(s)	525, 788
BlsI	GCNGC	2 cut(s)	526, 789
Bme1390I	CCNGG	5 cut(s)	74, 268, 659, 723, 807
BmrFI	CCNGG	5 cut(s)	74, 268, 659, 723, 807
BmsI	GCATC	3 cut(s)	227, 590, 741
BpiI	GAAGAC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
BpmI	CTGGAG	3 cut(s)	250, 744, 828
BpuMI	CCSGG	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	320
BseBI	CCWGG	4 cut(s)	268, 659, 723, 807
BseGI	GGATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	511, 774
BseYI	CCCAGC	1 cut(s)	149
Bsh1236I	CGCG	2 cut(s)	81, 253
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	568
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	63, 74
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	3 cut(s)	109, 268, 720
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	568
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	165, 226, 499, 544
BspACI	CCGC	4 cut(s)	253, 461, 533, 751
BspANI	GGCC	1 cut(s)	568
BspFNI	CGCG	2 cut(s)	81, 253
BspHI	TCATGA	1 cut(s)	229
BspPI	GGATC	1 cut(s)	494
BsrI	ACTGG	1 cut(s)	320
BssMI	GATC	4 cut(s)	165, 226, 499, 544
BssNAI	GTATAC	1 cut(s)	453
BssSI	CACGAG	1 cut(s)	99
Bst1107I	GTATAC	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	99
Bst2UI	CCWGG	4 cut(s)	268, 659, 723, 807
Bst4CI	ACNGT	3 cut(s)	26, 32, 510
BstC8I	GCNNGC	3 cut(s)	570, 574, 695
BstEII	GGTNACC	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	276
BstFNI	CGCG	2 cut(s)	81, 253
BstKTI	GATC	4 cut(s)	168, 229, 502, 547
BstMAI	GTCTC	3 cut(s)	109, 268, 720
BstMBI	GATC	4 cut(s)	165, 226, 499, 544
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 530, 578
BstNI	CCWGG	4 cut(s)	268, 659, 723, 807
BstPI	GGTNACC	1 cut(s)	68
BstSCI	CCNGG	5 cut(s)	72, 266, 657, 721, 805
BstUI	CGCG	2 cut(s)	81, 253
BstV1I	GCAGC	2 cut(s)	511, 774
BstV2I	GAAGAC	1 cut(s)	177
BstZ17I	GTATAC	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	276
Cac8I	GCNNGC	3 cut(s)	570, 574, 695
CciI	TCATGA	1 cut(s)	229
CseI	GACGC	2 cut(s)	198, 420
CviAII	CATG	5 cut(s)	230, 397, 464, 497, 699
CviJI	RGCY	9 cut(s)	56, 88, 153, 310, 343, 524, 568, 745, 787
CviKI_1	RGCY	9 cut(s)	56, 88, 153, 310, 343, 524, 568, 745, 787
DpnI	GATC	4 cut(s)	167, 228, 501, 546
DpnII	GATC	4 cut(s)	165, 226, 499, 544
DraIII	CACNNNGTG	1 cut(s)	202
DrdI	GACNNNNNNGTC	1 cut(s)	431
DseDI	GACNNNNNNGTC	1 cut(s)	431
Eco147I	AGGCCT	1 cut(s)	568
Eco32I	GATATC	1 cut(s)	276
Eco57I	CTGAAG	2 cut(s)	139, 702
Eco91I	GGTNACC	1 cut(s)	68
EcoO65I	GGTNACC	1 cut(s)	68
EcoRII	CCWGG	4 cut(s)	266, 657, 721, 805
EcoRV	GATATC	1 cut(s)	276
EcoT22I	ATGCAT	1 cut(s)	498
FaeI	CATG	5 cut(s)	233, 400, 467, 500, 702
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	5 cut(s)	229, 396, 463, 496, 698
FauI	CCCGC	1 cut(s)	246
FauNDI	CATATG	1 cut(s)	714
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	452
Fnu4HI	GCNGC	2 cut(s)	525, 788
FokI	GGATG	1 cut(s)	283
Fsp4HI	GCNGC	2 cut(s)	525, 788
GluI	GCNGC	2 cut(s)	525, 788
GsaI	CCCAGC	1 cut(s)	153
GsuI	CTGGAG	3 cut(s)	250, 744, 828
HaeIII	GGCC	1 cut(s)	568
HapII	CCGG	2 cut(s)	63, 74
HgaI	GACGC	2 cut(s)	198, 420
Hin1II	CATG	5 cut(s)	233, 400, 467, 500, 702
HinfI	GANTC	2 cut(s)	145, 536
HpaII	CCGG	2 cut(s)	63, 74
HphI	GGTGA	2 cut(s)	62, 234
Hpy166II	GTNNAC	2 cut(s)	424, 453
Hpy188I	TCNGA	4 cut(s)	128, 142, 437, 682
Hpy188III	TCNNGA	3 cut(s)	197, 230, 623
Hpy8I	GTNNAC	2 cut(s)	424, 453
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	3 cut(s)	26, 32, 510
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	5 cut(s)	187, 448, 496, 572, 732
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 530, 578
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	5 cut(s)	233, 400, 467, 500, 702
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	4 cut(s)	165, 226, 499, 544
Lsp1109I	GCAGC	2 cut(s)	511, 774
LweI	GCATC	3 cut(s)	227, 590, 741
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	6 cut(s)	26, 49, 68, 240, 329, 717
MalI	GATC	4 cut(s)	167, 228, 501, 546
MboI	GATC	4 cut(s)	165, 226, 499, 544
MboII	GAAGA	3 cut(s)	182, 610, 674
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	5 cut(s)	34, 109, 178, 299, 707
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	7 cut(s)	59, 108, 255, 514, 558, 583, 803
Mph1103I	ATGCAT	1 cut(s)	498
MroXI	GAANNNNTTC	2 cut(s)	323, 687
MseI	TTAA	3 cut(s)	390, 428, 641
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	2 cut(s)	63, 74
MspR9I	CCNGG	5 cut(s)	74, 268, 659, 723, 807
MvaI	CCWGG	4 cut(s)	268, 659, 723, 807
MvnI	CGCG	2 cut(s)	81, 253
MwoI	GCNNNNNNNGC	3 cut(s)	215, 530, 578
NciI	CCSGG	1 cut(s)	74
NdeI	CATATG	1 cut(s)	714
NdeII	GATC	4 cut(s)	165, 226, 499, 544
NlaIII	CATG	5 cut(s)	233, 400, 467, 500, 702
NmuCI	GTSAC	3 cut(s)	49, 68, 240
NsiI	ATGCAT	1 cut(s)	498
PagI	TCATGA	1 cut(s)	229
PceI	AGGCCT	1 cut(s)	568
PdmI	GAANNNNTTC	2 cut(s)	323, 687
PfeI	GAWTC	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	526, 789
Ple19I	CGATCG	1 cut(s)	168
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
Psp6I	CCWGG	4 cut(s)	266, 657, 721, 805
PspEI	GGTNACC	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	4 cut(s)	266, 657, 721, 805
PvuI	CGATCG	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	390, 428, 641
SatI	GCNGC	2 cut(s)	525, 788
Sau3AI	GATC	4 cut(s)	165, 226, 499, 544
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	5 cut(s)	74, 268, 659, 723, 807
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	3 cut(s)	227, 590, 741
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	5 cut(s)	34, 109, 178, 299, 707
SseBI	AGGCCT	1 cut(s)	568
SsiI	CCGC	4 cut(s)	253, 461, 533, 751
StuI	AGGCCT	1 cut(s)	568
StyD4I	CCNGG	5 cut(s)	72, 266, 657, 721, 805
TaaI	ACNGT	3 cut(s)	26, 32, 510
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	6 cut(s)	5, 164, 168, 563, 622, 635
TasI	AATT	5 cut(s)	34, 109, 178, 299, 707
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	3 cut(s)	390, 428, 641
Tru9I	TTAA	3 cut(s)	390, 428, 641
TseFI	GTSAC	3 cut(s)	49, 68, 240
TseI	GCWGC	2 cut(s)	524, 787
Tsp45I	GTSAC	3 cut(s)	49, 68, 240
TspDTI	ATGAA	1 cut(s)	489
XapI	RAATTY	2 cut(s)	109, 707
XcmI	CCANNNNNNNNNTGG	1 cut(s)	719
XmiI	GTMKAC	1 cut(s)	452
XmnI	GAANNNNTTC	2 cut(s)	323, 687
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.