Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Reverse (-)

10327269 .. 10327517

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1076700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCCAAGGCCTGCAAGCAAAGCAGCGGTCGAGGCCTTGGAGAAGTTGGTATTTGATGAACGAGCAGATGGTTCGAGCAGCAATCAATACTGTGTGGTTTGCTTGGAAAAGATGTTGAGTGGAGAGCAAGTCACTCGGTTGCCGTGCTCTCATATGTTTCACGGAGACTGCATTGTGGAATGGTTAAACCAGTGTCATACGTGCCCGGTGTGTAGGTTCAAGTTGCCAGCAGAAGCAAACTCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

83

Amino Acids

9.13

Weight (kDa)

5.84

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	30 - 72	7.5e-15	Ring finger domain
zf-C3HC4_2	PF13923	30 - 71	1.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	30 - 72	2.2e-07	RING-H2 zinc finger domain
zf-RING_11	PF17123	31 - 58	5.1e-11	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	220
Alw21I	GWGCWC	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	159
AoxI	GGCC	2 cut(s)	8, 33
ApeKI	GCWGC	2 cut(s)	23, 78
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
AsuC2I	CCSGG	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	149
BbvI	GCAGC	2 cut(s)	35, 90
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	4 cut(s)	54, 88, 116, 150
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	159
BisI	GCNGC	2 cut(s)	24, 79
BlsI	GCNGC	2 cut(s)	25, 80
Bme1390I	CCNGG	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	5, 36
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	5, 36
BseNI	ACTGG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	35, 90
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	10, 35
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	2 cut(s)	10, 35
Bsp1286I	GDGCHC	2 cut(s)	149, 206
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	2 cut(s)	10, 35
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	5, 36
BssT1I	CCWWGG	2 cut(s)	5, 36
Bst4CI	ACNGT	1 cut(s)	92
BstBAI	YACGTR	1 cut(s)	201
BstC8I	GCNNGC	3 cut(s)	12, 16, 228
BstMAI	GTCTC	1 cut(s)	159
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 32
BstSCI	CCNGG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	35, 90
BsuRI	GGCC	2 cut(s)	10, 35
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	3 cut(s)	12, 16, 228
CviJI	RGCY	2 cut(s)	10, 35
CviKI_1	RGCY	2 cut(s)	10, 35
Eco130I	CCWWGG	2 cut(s)	5, 36
Eco147I	AGGCCT	2 cut(s)	10, 35
EcoT14I	CCWWGG	2 cut(s)	5, 36
ErhI	CCWWGG	2 cut(s)	5, 36
FaiI	YATR	3 cut(s)	153, 155, 198
FauNDI	CATATG	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	24, 79
Fsp4HI	GCNGC	2 cut(s)	24, 79
GluI	GCNGC	2 cut(s)	24, 79
HaeIII	GGCC	2 cut(s)	10, 35
HapII	CCGG	1 cut(s)	206
HpaII	CCGG	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	2 cut(s)	14, 171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 32
HpySE526I	ACGT	1 cut(s)	200
LpnPI	CCDG	4 cut(s)	24, 203, 219, 240
Lsp1109I	GCAGC	2 cut(s)	35, 90
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	130
MhlI	GDGCHC	2 cut(s)	149, 206
MnlI	CCTC	1 cut(s)	25
MseI	TTAA	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	20, 32
NciI	CCSGG	1 cut(s)	206
NdeI	CATATG	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	130
PceI	AGGCCT	2 cut(s)	10, 35
PkrI	GCNGC	2 cut(s)	25, 80
Ppu21I	YACGTR	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	2 cut(s)	24, 79
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	2 cut(s)	149, 206
SetI	ASST	2 cut(s)	203, 218
SseBI	AGGCCT	2 cut(s)	10, 35
SsiI	CCGC	1 cut(s)	26
StuI	AGGCCT	2 cut(s)	10, 35
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	2 cut(s)	5, 36
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	2 cut(s)	30, 74
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	23, 78
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.