Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Reverse (-)

55893565 .. 55894572

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G032940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCGACCTCCTACAACAACGACAATAACTATAGCATATATGTGACGGCTTATAGCAAAGGTTTCCCCGACGTAAAGTCGCTTTCGAGTCCTCGTGTCTCAATTCTTTGGAATGTCACCAGAAGATACGACTCAGAGAATCTCAGCTTCATCGAAGACCACAATTCAAGCCACACATTTGATGATATATTTGCGTCAATCGCATCTACCAATAATGATTATATGCCACCTCAATCGCGGGATACTATCTCCAGGATGATATCTCTGACCTACCTAACTCGTGTGCAAAATCAACATCAGGCTGCTGGTATGATCTGGAGAGCTTATCATGAACAACGTAGAAGAATTGAAAACGAAATGCGTGCCAATAATATTTCTCCAGAAATGAGTCAAATGACTATGGGTAATGGAAGATTGTTGGAGCTGGAGGCCGCTATTAGGGAGTCATTTGATCAAGCAGTATTCAAGTCGAGGCCTGCAAGCAAGGCATCGGTTGAGGCATTGGAGAAGTTTGTGTTGGACGATGGGGATGGAGGTTCGAGTTCGATGTGCATGTGTGATTTGCCAGGAGGAGATGTTGACTGGTTTTGGAGTCATTCTCTTGCCATGCTCCCATTATCCCATATGTTCCATGGAGACTGCATTGTAGAATGGTTAAACCGCTGGGATCATACGTATCCTGTGTGTAAGTTCAAGTTGCCAAGAGAAGAACGAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

240

Amino Acids

27.69

Weight (kDa)

5.75

Isoelectric Point (pI)

61.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	238
AciI	CCGC	3 cut(s)	238, 432, 661
AclWI	GGATC	1 cut(s)	675
AfiI	CCNNNNNNNGG	1 cut(s)	438
AgsI	TTSAA	4 cut(s)	168, 350, 466, 694
AhdI	GACNNNNNGTC	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	251, 565
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AluBI	AGCT	3 cut(s)	147, 323, 424
AluI	AGCT	3 cut(s)	147, 323, 424
Alw26I	GTCTC	2 cut(s)	103, 630
AlwI	GGATC	1 cut(s)	675
AoxI	GGCC	2 cut(s)	429, 473
ApeKI	GCWGC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	109
BauI	CACGAG	2 cut(s)	93, 279
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	2 cut(s)	518, 524
BceAI	ACGGC	1 cut(s)	63
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	2 cut(s)	253, 567
BciVI	GTATCC	2 cut(s)	235, 687
BclI	TGATCA	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	103, 630
BfmI	CTRYAG	1 cut(s)	31
BfuI	GTATCC	2 cut(s)	235, 687
BisI	GCNGC	2 cut(s)	303, 432
BlsI	GCNGC	2 cut(s)	304, 433
Bme1390I	CCNGG	2 cut(s)	253, 567
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	253, 567
BmsI	GCATC	2 cut(s)	212, 497
BpiI	GAAGAC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	583, 615
BpmI	CTGGAG	4 cut(s)	235, 337, 363, 446
BsaAI	YACGTR	1 cut(s)	675
BsaJI	CCNNGG	1 cut(s)	631
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	438
Bse1I	ACTGG	1 cut(s)	587
BseBI	CCWGG	2 cut(s)	253, 567
BseDI	CCNNGG	1 cut(s)	631
BseGI	GGATG	2 cut(s)	261, 535
BseLI	CCNNNNNNNGG	1 cut(s)	438
BseMII	CTCAG	2 cut(s)	147, 157
BseNI	ACTGG	1 cut(s)	587
BseRI	GAGGAG	1 cut(s)	585
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	663
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	2 cut(s)	431, 475
BslI	CCNNNNNNNGG	1 cut(s)	438
BsmAI	GTCTC	2 cut(s)	103, 630
BsnI	GGCC	2 cut(s)	431, 475
Bsp143I	GATC	3 cut(s)	312, 451, 667
Bsp19I	CCATGG	1 cut(s)	631
BspACI	CCGC	3 cut(s)	238, 432, 661
BspANI	GGCC	2 cut(s)	431, 475
BspCNI	CTCAG	2 cut(s)	146, 156
BspFNI	CGCG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	328
BspPI	GGATC	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	587
BssECI	CCNNGG	1 cut(s)	631
BssMI	GATC	3 cut(s)	312, 451, 667
BssSI	CACGAG	2 cut(s)	93, 279
BssT1I	CCWWGG	1 cut(s)	631
Bst2BI	CACGAG	2 cut(s)	93, 279
Bst2UI	CCWGG	2 cut(s)	253, 567
BstBAI	YACGTR	1 cut(s)	675
BstC8I	GCNNGC	3 cut(s)	363, 477, 481
BstDEI	CTNAG	2 cut(s)	133, 143
BstDSI	CCRYGG	1 cut(s)	631
BstF5I	GGATG	2 cut(s)	261, 535
BstFNI	CGCG	1 cut(s)	238
BstKTI	GATC	3 cut(s)	315, 454, 670
BstMAI	GTCTC	2 cut(s)	103, 630
BstMBI	GATC	3 cut(s)	312, 451, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 485
BstNI	CCWGG	2 cut(s)	253, 567
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	2 cut(s)	251, 565
BstSFI	CTRYAG	1 cut(s)	31
BstSNI	TACGTA	1 cut(s)	675
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	162
BsuI	GTATCC	2 cut(s)	235, 687
BsuRI	GGCC	2 cut(s)	431, 475
BtgI	CCRYGG	1 cut(s)	631
BtsCI	GGATG	2 cut(s)	261, 535
Cac8I	GCNNGC	3 cut(s)	363, 477, 481
CciI	TCATGA	1 cut(s)	328
CseI	GACGC	1 cut(s)	183
CviAII	CATG	4 cut(s)	329, 553, 607, 632
CviJI	RGCY	8 cut(s)	50, 147, 171, 302, 323, 424, 431, 475
CviKI_1	RGCY	8 cut(s)	50, 147, 171, 302, 323, 424, 431, 475
DdeI	CTNAG	2 cut(s)	133, 143
DpnI	GATC	3 cut(s)	314, 453, 669
DpnII	GATC	3 cut(s)	312, 451, 667
DriI	GACNNNNNGTC	1 cut(s)	76
Eam1105I	GACNNNNNGTC	1 cut(s)	76
Eco105I	TACGTA	1 cut(s)	675
Eco130I	CCWWGG	1 cut(s)	631
Eco147I	AGGCCT	1 cut(s)	475
Eco32I	GATATC	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	251, 565
EcoRV	GATATC	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	631
ErhI	CCWWGG	1 cut(s)	631
FaeI	CATG	4 cut(s)	332, 556, 610, 635
FatI	CATG	4 cut(s)	328, 552, 606, 631
FauI	CCCGC	1 cut(s)	231
FauNDI	CATATG	1 cut(s)	624
FbaI	TGATCA	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	303, 432
FokI	GGATG	2 cut(s)	268, 542
Fsp4HI	GCNGC	2 cut(s)	303, 432
GluI	GCNGC	2 cut(s)	303, 432
GsaI	CCCAGC	1 cut(s)	667
GsuI	CTGGAG	4 cut(s)	235, 337, 363, 446
HaeIII	GGCC	2 cut(s)	431, 475
HgaI	GACGC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	332, 556, 610, 635
HincII	GTYRAC	2 cut(s)	6, 580
HindII	GTYRAC	2 cut(s)	6, 580
HinfI	GANTC	6 cut(s)	88, 131, 139, 388, 443, 592
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	6, 580
Hpy188I	TCNGA	2 cut(s)	136, 267
Hpy188III	TCNNGA	3 cut(s)	316, 329, 380
Hpy8I	GTNNAC	2 cut(s)	6, 580
Hpy99I	CGWCG	1 cut(s)	74
HpyCH4IV	ACGT	3 cut(s)	72, 337, 674
HpyCH4V	TGCA	4 cut(s)	286, 479, 552, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 485
HpyF3I	CTNAG	2 cut(s)	133, 143
HpySE526I	ACGT	3 cut(s)	72, 337, 674
Hsp92II	CATG	4 cut(s)	332, 556, 610, 635
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	3 cut(s)	312, 451, 667
LmnI	GCTCC	2 cut(s)	421, 615
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	2 cut(s)	212, 497
MaeII	ACGT	3 cut(s)	72, 337, 674
MaeIII	GTNAC	2 cut(s)	43, 115
MalI	GATC	3 cut(s)	314, 453, 669
MboI	GATC	3 cut(s)	312, 451, 667
MboII	GAAGA	5 cut(s)	135, 167, 354, 423, 719
MluCI	AATT	4 cut(s)	102, 163, 345, 718
MlyI	GAGTC	5 cut(s)	97, 125, 397, 452, 601
MmeI	TCCRAC	2 cut(s)	399, 498
MnlI	CCTC	8 cut(s)	19, 102, 240, 421, 465, 490, 527, 563
MseI	TTAA	2 cut(s)	656, 721
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	663
MspR9I	CCNGG	2 cut(s)	253, 567
MvaI	CCWGG	2 cut(s)	253, 567
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	2 cut(s)	200, 485
NcoI	CCATGG	1 cut(s)	631
NdeI	CATATG	1 cut(s)	624
NdeII	GATC	3 cut(s)	312, 451, 667
NlaIII	CATG	4 cut(s)	332, 556, 610, 635
NmuCI	GTSAC	2 cut(s)	43, 115
NspI	RCATGY	1 cut(s)	556
PagI	TCATGA	1 cut(s)	328
PceI	AGGCCT	1 cut(s)	475
PfeI	GAWTC	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	304, 433
PleI	GAGTC	5 cut(s)	96, 125, 396, 451, 600
PpsI	GAGTC	5 cut(s)	96, 125, 396, 451, 600
Ppu21I	YACGTR	1 cut(s)	675
Psp6I	CCWGG	2 cut(s)	251, 565
PspFI	CCCAGC	1 cut(s)	663
PspGI	CCWGG	2 cut(s)	251, 565
RseI	CAYNNNNRTG	1 cut(s)	41
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	656, 721
SatI	GCNGC	2 cut(s)	303, 432
Sau3AI	GATC	3 cut(s)	312, 451, 667
SchI	GAGTC	5 cut(s)	97, 125, 397, 452, 601
ScrFI	CCNGG	2 cut(s)	253, 567
SfaNI	GCATC	2 cut(s)	212, 497
SfcI	CTRYAG	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	41
SnaBI	TACGTA	1 cut(s)	675
Sse9I	AATT	4 cut(s)	102, 163, 345, 718
SseBI	AGGCCT	1 cut(s)	475
SsiI	CCGC	3 cut(s)	238, 432, 661
SspI	AATATT	1 cut(s)	373
StuI	AGGCCT	1 cut(s)	475
StyD4I	CCNGG	2 cut(s)	251, 565
StyI	CCWWGG	1 cut(s)	631
TaiI	ACGT	3 cut(s)	75, 340, 677
TaqI	TCGA	6 cut(s)	5, 86, 153, 470, 539, 545
TasI	AATT	4 cut(s)	102, 163, 345, 718
TauI	GCSGC	1 cut(s)	434
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	656, 721
Tru9I	TTAA	2 cut(s)	656, 721
TseFI	GTSAC	2 cut(s)	43, 115
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	2 cut(s)	43, 115
TspDTI	ATGAA	2 cut(s)	139, 345
XceI	RCATGY	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.