Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Forward (+)

9608769 .. 9610319

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G083200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCAGGCTCTCATTCCCAGAAGAAGCGACGCCCCAGAATATAGTGTATTTGTGAAGGTAGAGAACAGAGGTTTCCCGGATCATGAGTCGCTTTCGATTCCTCACTCTCAGGTTTCAATTGCATGGAAGTTCATTAGAAGCCACCGTTGTTCTTCGGATACCGGCACCGACACAAAGCCGATTATAGACGTCAATACATGGTATGAATCTAATGAGAAGTACCCATTCGAGTTATTCACATCCAATAATACCTGCAATATTATATCAAACATGCTATCTCGCAGAGACATCCCATTCCCACTAGATAGGCTACGCTGGAGAAAGCGTTACATTGGAAACACAGAGCCATTAGAGGACGTTGAAGCTATGACAAGGAAAATAGTGCTTGTTGTTAAAGCCATGGCTAGCCAAGCAGCTTCTCACTCTGGACTTGGGAGGCTGGATATACTTGTCACCGTGGAGAAGGAGATTATATTACCACAAACACAATATCAATTAATGCAACTGGAGGATCGGGTCGAGGATTTGAGGCAAGGTTTGGCCTCATTAAGACAGGGTTATGTTGATGATTTTCGACGGTTGCAGGGTCTTCAAGATTTGGAGCTGAGGCTATTGACAGAAAGGAATCAACTATTTCGTAGGGCAGCAGCAGCCCTACTAACAGAGGAGGCTGCTGTAAGAGAGTCGTTAGATGAAGCTGCAGTACTGTTGAGACCAAAACCTGCAAGCAAAGCATCAGTTGAGGCCTTGGAGAAGTTGGTGTTTCAGGGAGGAGGAGGTGAGTGTGTGTTTTGCTTGGAGAAGATGGTGAGTGGGGATCAAGTCACGCGTTTGCCATGCTCTCATGTGTTTCATGGAGATTGCGTTGTTGAATGGCTAAAACTAGGGCATACCTGTCCTGTTTGCAGGTTCAAGTTGCCAACAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

310

Amino Acids

35.13

Weight (kDa)

6.41

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	192
Acc36I	ACCTGC	3 cut(s)	260, 730, 897
AccB1I	GGYRCC	1 cut(s)	164
AccII	CGCG	1 cut(s)	829
AclWI	GGATC	3 cut(s)	87, 519, 825
AcyI	GRCGYC	2 cut(s)	30, 189
AfaI	GTAC	2 cut(s)	221, 705
AflIII	ACRYGT	1 cut(s)	827
AgsI	TTSAA	5 cut(s)	117, 362, 593, 872, 913
AluBI	AGCT	4 cut(s)	365, 416, 604, 698
AluI	AGCT	4 cut(s)	365, 416, 604, 698
Alw26I	GTCTC	2 cut(s)	279, 706
AlwI	GGATC	3 cut(s)	87, 519, 825
AoxI	GGCC	2 cut(s)	540, 744
ApeKI	GCWGC	6 cut(s)	413, 644, 647, 650, 671, 698
AseI	ATTAAT	1 cut(s)	497
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	3 cut(s)	445, 791, 820
AsuNHI	GCTAGC	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	164
BarI	GAAGNNNNNNTAC	2 cut(s)	687, 719
BbsI	GAAGAC	1 cut(s)	581
BbvCI	CCTCAGC	1 cut(s)	605
BbvI	GCAGC	6 cut(s)	425, 656, 658, 659, 662, 685
BccI	CCATC	1 cut(s)	799
BciVI	GTATCC	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	279, 706
BfaI	CTAG	3 cut(s)	302, 405, 884
BfmI	CTRYAG	1 cut(s)	699
BfuAI	ACCTGC	3 cut(s)	260, 730, 897
BfuI	GTATCC	1 cut(s)	151
BisI	GCNGC	6 cut(s)	414, 645, 648, 651, 672, 699
BlsI	GCNGC	6 cut(s)	415, 646, 649, 652, 673, 700
BmcAI	AGTACT	1 cut(s)	705
Bme1390I	CCNGG	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	743
BmtI	GCTAGC	1 cut(s)	408
BpiI	GAAGAC	1 cut(s)	581
BpmI	CTGGAG	2 cut(s)	337, 527
Bpu10I	CCTNAGC	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	77
BsaHI	GRCGYC	2 cut(s)	30, 189
BsaI	GGTCTC	1 cut(s)	706
BsaJI	CCNNGG	3 cut(s)	399, 456, 747
BsaXI	ACNNNNNCTCC	4 cut(s)	310, 340, 849, 879
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	510
BseDI	CCNNGG	3 cut(s)	399, 456, 747
BseGI	GGATG	2 cut(s)	239, 288
BseMII	CTCAG	2 cut(s)	122, 596
BseNI	ACTGG	1 cut(s)	510
BseRI	GAGGAG	3 cut(s)	680, 786, 789
BseXI	GCAGC	6 cut(s)	425, 656, 658, 659, 662, 685
Bsh1236I	CGCG	1 cut(s)	829
BshFI	GGCC	2 cut(s)	542, 746
BshNI	GGYRCC	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	77, 162
BsmAI	GTCTC	2 cut(s)	279, 706
BsnI	GGCC	2 cut(s)	542, 746
Bso31I	GGTCTC	1 cut(s)	706
Bsp143I	GATC	3 cut(s)	79, 511, 817
Bsp19I	CCATGG	1 cut(s)	399
BspANI	GGCC	2 cut(s)	542, 746
BspCNI	CTCAG	2 cut(s)	121, 597
BspFNI	CGCG	1 cut(s)	829
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	166
BspMAI	CTGCAG	1 cut(s)	703
BspMI	ACCTGC	3 cut(s)	260, 730, 897
BspOI	GCTAGC	1 cut(s)	408
BspPI	GGATC	3 cut(s)	87, 519, 825
BspT107I	GGYRCC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	706
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	510
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	3 cut(s)	399, 456, 747
BssMI	GATC	3 cut(s)	79, 511, 817
BssNI	GRCGYC	2 cut(s)	30, 189
BssT1I	CCWWGG	2 cut(s)	399, 747
Bst4CI	ACNGT	4 cut(s)	146, 457, 579, 708
BstACI	GRCGYC	2 cut(s)	30, 189
BstC8I	GCNNGC	3 cut(s)	6, 406, 727
BstDEI	CTNAG	2 cut(s)	108, 605
BstDSI	CCRYGG	2 cut(s)	399, 456
BstF5I	GGATG	2 cut(s)	239, 288
BstFNI	CGCG	1 cut(s)	829
BstKTI	GATC	3 cut(s)	82, 514, 820
BstMAI	GTCTC	2 cut(s)	279, 706
BstMBI	GATC	3 cut(s)	79, 511, 817
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 650, 731
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	699
BstUI	CGCG	1 cut(s)	829
BstV1I	GCAGC	6 cut(s)	425, 656, 658, 659, 662, 685
BstV2I	GAAGAC	1 cut(s)	581
BsuI	GTATCC	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	542, 746
BtgI	CCRYGG	2 cut(s)	399, 456
BtsCI	GGATG	2 cut(s)	239, 288
BveI	ACCTGC	3 cut(s)	260, 730, 897
Cac8I	GCNNGC	3 cut(s)	6, 406, 727
CciI	TCATGA	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	161
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	220, 704
CviAII	CATG	8 cut(s)	83, 123, 198, 271, 400, 837, 845, 854
CviQI	GTAC	2 cut(s)	220, 704
DdeI	CTNAG	2 cut(s)	108, 605
DpnI	GATC	3 cut(s)	81, 513, 819
DpnII	GATC	3 cut(s)	79, 511, 817
Eco130I	CCWWGG	2 cut(s)	399, 747
Eco147I	AGGCCT	1 cut(s)	746
Eco31I	GGTCTC	1 cut(s)	706
EcoT14I	CCWWGG	2 cut(s)	399, 747
ErhI	CCWWGG	2 cut(s)	399, 747
FaeI	CATG	8 cut(s)	86, 126, 201, 274, 403, 840, 848, 857
FatI	CATG	8 cut(s)	82, 122, 197, 270, 399, 836, 844, 853
Fnu4HI	GCNGC	6 cut(s)	414, 645, 648, 651, 672, 699
FokI	GGATG	2 cut(s)	226, 275
Fsp4HI	GCNGC	6 cut(s)	414, 645, 648, 651, 672, 699
FspBI	CTAG	3 cut(s)	302, 405, 884
GluI	GCNGC	6 cut(s)	414, 645, 648, 651, 672, 699
GsuI	CTGGAG	2 cut(s)	337, 527
HaeIII	GGCC	2 cut(s)	542, 746
HapII	CCGG	2 cut(s)	77, 162
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	2 cut(s)	30, 189
Hin1II	CATG	8 cut(s)	86, 126, 201, 274, 403, 840, 848, 857
HinfI	GANTC	5 cut(s)	86, 97, 206, 625, 683
HpaII	CCGG	2 cut(s)	77, 162
HphI	GGTGA	3 cut(s)	445, 791, 820
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	3 cut(s)	83, 426, 593
Hpy99I	CGWCG	2 cut(s)	32, 579
HpyAV	CCTTC	2 cut(s)	49, 457
HpyCH4III	ACNGT	4 cut(s)	146, 457, 579, 708
HpyCH4IV	ACGT	2 cut(s)	189, 357
HpyCH4V	TGCA	8 cut(s)	4, 122, 255, 502, 583, 701, 725, 906
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 650, 731
HpyF3I	CTNAG	2 cut(s)	108, 605
HpySE526I	ACGT	2 cut(s)	189, 357
Hsp92I	GRCGYC	2 cut(s)	30, 189
Hsp92II	CATG	8 cut(s)	86, 126, 201, 274, 403, 840, 848, 857
Kzo9I	GATC	3 cut(s)	79, 511, 817
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	6 cut(s)	425, 656, 658, 659, 662, 685
LweI	GCATC	1 cut(s)	743
MaeI	CTAG	3 cut(s)	302, 405, 884
MaeII	ACGT	2 cut(s)	189, 357
MaeIII	GTNAC	3 cut(s)	326, 451, 823
MalI	GATC	3 cut(s)	81, 513, 819
MboI	GATC	3 cut(s)	79, 511, 817
MboII	GAAGA	4 cut(s)	33, 144, 581, 814
MfeI	CAATTG	1 cut(s)	117
MluCI	AATT	2 cut(s)	117, 494
MluI	ACGCGT	1 cut(s)	827
MlyI	GAGTC	2 cut(s)	95, 692
MseI	TTAA	3 cut(s)	393, 497, 548
MspI	CCGG	2 cut(s)	77, 162
MspR9I	CCNGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	829
MwoI	GCNNNNNNNGC	3 cut(s)	410, 650, 731
NciI	CCSGG	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	3 cut(s)	79, 511, 817
NheI	GCTAGC	1 cut(s)	404
NlaIII	CATG	8 cut(s)	86, 126, 201, 274, 403, 840, 848, 857
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	451, 823
NspI	RCATGY	1 cut(s)	274
PagI	TCATGA	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	746
PfeI	GAWTC	3 cut(s)	97, 206, 625
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	6 cut(s)	415, 646, 649, 652, 673, 700
PleI	GAGTC	2 cut(s)	94, 691
PpsI	GAGTC	2 cut(s)	94, 691
PshBI	ATTAAT	1 cut(s)	497
PspN4I	GGNNCC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	703
RsaI	GTAC	2 cut(s)	221, 705
RsaNI	GTAC	2 cut(s)	220, 704
SaqAI	TTAA	3 cut(s)	393, 497, 548
SatI	GCNGC	6 cut(s)	414, 645, 648, 651, 672, 699
Sau3AI	GATC	3 cut(s)	79, 511, 817
ScaI	AGTACT	1 cut(s)	705
SchI	GAGTC	2 cut(s)	95, 692
ScrFI	CCNGG	1 cut(s)	77
SfaNI	GCATC	1 cut(s)	743
SfcI	CTRYAG	1 cut(s)	699
Sse9I	AATT	2 cut(s)	117, 494
SseBI	AGGCCT	1 cut(s)	746
SspI	AATATT	1 cut(s)	259
SspMI	CTAG	3 cut(s)	302, 405, 884
StuI	AGGCCT	1 cut(s)	746
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	2 cut(s)	399, 747
TaaI	ACNGT	4 cut(s)	146, 457, 579, 708
TaiI	ACGT	2 cut(s)	192, 360
TaqI	TCGA	4 cut(s)	95, 228, 519, 574
TasI	AATT	2 cut(s)	117, 494
TatI	WGTACW	1 cut(s)	703
TfiI	GAWTC	3 cut(s)	97, 206, 625
Tru1I	TTAA	3 cut(s)	393, 497, 548
Tru9I	TTAA	3 cut(s)	393, 497, 548
TseFI	GTSAC	2 cut(s)	451, 823
TseI	GCWGC	6 cut(s)	413, 644, 647, 650, 671, 698
Tsp45I	GTSAC	2 cut(s)	451, 823
TspDTI	ATGAA	4 cut(s)	121, 219, 708, 842
VspI	ATTAAT	1 cut(s)	497
XceI	RCATGY	1 cut(s)	274
XspI	CTAG	3 cut(s)	302, 405, 884
ZraI	GACGTC	1 cut(s)	190
ZrmI	AGTACT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.