Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Reverse (-)

50691228 .. 50692216

Gene Structure 989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG385300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTCGACCTCCTACAACAACGACAGTAACTATAGCATATATGTGATGGCTTATAGCAGAGGTTTCCGCGACGAGGAATCGCTTTCGAGTCCTCGTGTCTCGATTCTTTGGAATGTCATCAGAAGCTACAACTCAGAGAATCTCAGCTTCATCCAAGAACACAATTCAAGCCACCAATTTGATGATGTATTTGCGTCAATCGCATCTACCAATAATGATTATATGTCACCTCAATCGCGGGATACTATCTCCACGATGATATCTCGTATAAACTTCCCCTTTGAATTAGATAGGCTAAGCTGGAAAGTTCGTTTAGATCGCAATAACACAATAATTCCGCTAAACAACGTTGATGAAATGATAAGCCAAATACTTGAAGTTATTAACGGCATGGTTGTCTCGGGATGCAAGAAGGTGGACTTATTTGTCACAGTTAATATGCAATATACATTACCACTTGAAGAATATCAAGCAAAGGTTCAAGCCAGTAAAGCGAGGGAGTTAACTGAAAGTTTAATCAAGCTCAATGCTGTGCTACAAAGGGATCTACGTCGTGTGCAAAATCAACATCAGGCTGCTGGTATGATCTGGAGAGCTTATCATGAACAACGTAGAAGAATTGAAAACGAAATGCGTGCCAATAATATTTCTCAAGAAATGATGTTGGAGCTGGAGGCCGCTATTAGGGAGTCATTTGATCAAGCAGTATTCAAGTCGAGGCCCGCAAGCAAGGCATCGGTTAAGGCATTGGAGAAGTTTGTGTTGGACGATGGAGATGGTGGTTCGTGTTCGATGTGTGTGATTTGCCAGGAGGAGATGTTGACTGGTTTTAGAGTCATTCGCTTGCCATGCTCCCATAGTCCCATATGTTCCATGGAGACTGCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

296

Amino Acids

33.94

Weight (kDa)

5.66

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	425
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	2 cut(s)	69, 238
AciI	CCGC	5 cut(s)	67, 238, 338, 678, 723
AclI	AACGTT	1 cut(s)	348
AclWI	GGATC	1 cut(s)	552
AfiI	CCNNNNNNNGG	2 cut(s)	73, 684
AgsI	TTSAA	7 cut(s)	168, 284, 377, 461, 482, 623, 712
AjnI	CCWGG	1 cut(s)	807
AjuI	GAANNNNNNNTTGG	2 cut(s)	746, 778
AluBI	AGCT	6 cut(s)	126, 147, 300, 523, 596, 670
AluI	AGCT	6 cut(s)	126, 147, 300, 523, 596, 670
Alw26I	GTCTC	3 cut(s)	103, 403, 872
AlwI	GGATC	1 cut(s)	552
Ama87I	CYCGRG	1 cut(s)	400
AoxI	GGCC	2 cut(s)	675, 719
ApeKI	GCWGC	1 cut(s)	575
AspS9I	GGNCC	1 cut(s)	720
AsuHPI	GGTGA	1 cut(s)	219
AvaI	CYCGRG	1 cut(s)	400
BauI	CACGAG	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	3 cut(s)	40, 764, 770
BceAI	ACGGC	1 cut(s)	403
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	1 cut(s)	809
BciVI	GTATCC	1 cut(s)	235
BclI	TGATCA	1 cut(s)	697
BcoDI	GTCTC	3 cut(s)	103, 403, 872
BfmI	CTRYAG	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	235
BisI	GCNGC	2 cut(s)	576, 678
BlpI	GCTNAGC	1 cut(s)	296
BlsI	GCNGC	2 cut(s)	577, 679
Bme1390I	CCNGG	1 cut(s)	809
BmeT110I	CYCGRG	1 cut(s)	400
BmgT120I	GGNCC	1 cut(s)	720
BmrFI	CCNGG	1 cut(s)	809
BmsI	GCATC	3 cut(s)	212, 395, 743
BpmI	CTGGAG	2 cut(s)	610, 692
Bpu1102I	GCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	636
BsaJI	CCNNGG	1 cut(s)	873
BsaXI	ACNNNNNCTCC	2 cut(s)	803, 833
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 684
Bse1I	ACTGG	2 cut(s)	486, 829
BseBI	CCWGG	1 cut(s)	809
BseDI	CCNNGG	1 cut(s)	873
BseGI	GGATG	2 cut(s)	150, 410
BseLI	CCNNNNNNNGG	2 cut(s)	73, 684
BseMII	CTCAG	2 cut(s)	147, 157
BseNI	ACTGG	2 cut(s)	486, 829
BseRI	GAGGAG	1 cut(s)	827
BseXI	GCAGC	1 cut(s)	562
Bsh1236I	CGCG	2 cut(s)	69, 238
BshFI	GGCC	2 cut(s)	677, 721
BsiHKCI	CYCGRG	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	846
BslI	CCNNNNNNNGG	2 cut(s)	73, 684
BsmAI	GTCTC	3 cut(s)	103, 403, 872
BsmFI	GGGAC	1 cut(s)	846
BsnI	GGCC	2 cut(s)	677, 721
BsoBI	CYCGRG	1 cut(s)	400
Bsp143I	GATC	4 cut(s)	316, 544, 585, 697
Bsp1720I	GCTNAGC	1 cut(s)	296
Bsp19I	CCATGG	1 cut(s)	873
BspACI	CCGC	5 cut(s)	67, 238, 338, 678, 723
BspANI	GGCC	2 cut(s)	677, 721
BspCNI	CTCAG	2 cut(s)	146, 156
BspFNI	CGCG	2 cut(s)	69, 238
BspHI	TCATGA	1 cut(s)	601
BspPI	GGATC	1 cut(s)	552
BsrI	ACTGG	2 cut(s)	486, 829
BssECI	CCNNGG	1 cut(s)	873
BssMI	GATC	4 cut(s)	316, 544, 585, 697
BssSI	CACGAG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	873
Bst2BI	CACGAG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	809
Bst4CI	ACNGT	2 cut(s)	26, 433
BstC8I	GCNNGC	4 cut(s)	636, 723, 727, 845
BstDEI	CTNAG	3 cut(s)	133, 143, 296
BstDSI	CCRYGG	1 cut(s)	873
BstF5I	GGATG	2 cut(s)	150, 410
BstFNI	CGCG	2 cut(s)	69, 238
BstKTI	GATC	4 cut(s)	319, 547, 588, 700
BstMAI	GTCTC	3 cut(s)	103, 403, 872
BstMBI	GATC	4 cut(s)	316, 544, 585, 697
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 491, 731, 849
BstNI	CCWGG	1 cut(s)	809
BstSCI	CCNGG	1 cut(s)	807
BstSFI	CTRYAG	1 cut(s)	31
BstUI	CGCG	2 cut(s)	69, 238
BstV1I	GCAGC	1 cut(s)	562
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	677, 721
BtgI	CCRYGG	1 cut(s)	873
BtsCI	GGATG	2 cut(s)	150, 410
Cac8I	GCNNGC	4 cut(s)	636, 723, 727, 845
CciI	TCATGA	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	720
CseI	GACGC	1 cut(s)	183
CviAII	CATG	4 cut(s)	391, 602, 849, 874
DdeI	CTNAG	3 cut(s)	133, 143, 296
DpnI	GATC	4 cut(s)	318, 546, 587, 699
DpnII	GATC	4 cut(s)	316, 544, 585, 697
DrdI	GACNNNNNNGTC	1 cut(s)	425
DseDI	GACNNNNNNGTC	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	873
Eco32I	GATATC	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	807
EcoRV	GATATC	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	873
FaeI	CATG	4 cut(s)	394, 605, 852, 877
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	1 cut(s)	846
FatI	CATG	4 cut(s)	390, 601, 848, 873
FauI	CCCGC	2 cut(s)	231, 730
FauNDI	CATATG	1 cut(s)	866
FbaI	TGATCA	1 cut(s)	697
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	576, 678
FokI	GGATG	2 cut(s)	137, 417
Fsp4HI	GCNGC	2 cut(s)	576, 678
GluI	GCNGC	2 cut(s)	576, 678
GsuI	CTGGAG	2 cut(s)	610, 692
HaeIII	GGCC	2 cut(s)	677, 721
HgaI	GACGC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	394, 605, 852, 877
HincII	GTYRAC	3 cut(s)	6, 504, 822
HindII	GTYRAC	3 cut(s)	6, 504, 822
HinfI	GANTC	6 cut(s)	77, 88, 103, 139, 689, 834
HpaI	GTTAAC	1 cut(s)	504
HphI	GGTGA	1 cut(s)	219
Hpy166II	GTNNAC	4 cut(s)	6, 418, 504, 822
Hpy188I	TCNGA	2 cut(s)	122, 136
Hpy188III	TCNNGA	5 cut(s)	100, 402, 589, 602, 653
Hpy8I	GTNNAC	4 cut(s)	6, 418, 504, 822
Hpy99I	CGWCG	2 cut(s)	74, 555
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	2 cut(s)	26, 433
HpyCH4IV	ACGT	3 cut(s)	348, 550, 610
HpyCH4V	TGCA	4 cut(s)	408, 442, 559, 884
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 491, 731, 849
HpyF3I	CTNAG	3 cut(s)	133, 143, 296
HpySE526I	ACGT	3 cut(s)	348, 550, 610
Hsp92II	CATG	4 cut(s)	394, 605, 852, 877
Ksp22I	TGATCA	1 cut(s)	697
KspAI	GTTAAC	1 cut(s)	504
Kzo9I	GATC	4 cut(s)	316, 544, 585, 697
LmnI	GCTCC	2 cut(s)	667, 857
LpnPI	CCDG	9 cut(s)	286, 499, 557, 564, 574, 656, 794, 810, 821
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	3 cut(s)	212, 395, 743
MaeII	ACGT	3 cut(s)	348, 550, 610
MaeIII	GTNAC	3 cut(s)	26, 225, 427
MalI	GATC	4 cut(s)	318, 546, 587, 699
MboI	GATC	4 cut(s)	316, 544, 585, 697
MboII	GAAGA	2 cut(s)	473, 627
MflI	RGATCY	1 cut(s)	544
MluCI	AATT	5 cut(s)	163, 176, 284, 333, 618
MlyI	GAGTC	3 cut(s)	97, 698, 843
MmeI	TCCRAC	2 cut(s)	645, 744
MnlI	CCTC	9 cut(s)	19, 53, 67, 102, 240, 489, 667, 711, 805
MseI	TTAA	5 cut(s)	384, 435, 503, 515, 741
MslI	CAYNNNNRTG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	809
MvaI	CCWGG	1 cut(s)	809
MvnI	CGCG	2 cut(s)	69, 238
MwoI	GCNNNNNNNGC	4 cut(s)	200, 491, 731, 849
NcoI	CCATGG	1 cut(s)	873
NdeI	CATATG	1 cut(s)	866
NdeII	GATC	4 cut(s)	316, 544, 585, 697
NlaIII	CATG	4 cut(s)	394, 605, 852, 877
NmuCI	GTSAC	2 cut(s)	225, 427
PagI	TCATGA	1 cut(s)	601
PfeI	GAWTC	3 cut(s)	77, 103, 139
PkrI	GCNGC	2 cut(s)	577, 679
PleI	GAGTC	3 cut(s)	96, 697, 842
PpsI	GAGTC	3 cut(s)	96, 697, 842
Psp1406I	AACGTT	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	807
PspGI	CCWGG	1 cut(s)	807
PspPI	GGNCC	1 cut(s)	720
PsuI	RGATCY	1 cut(s)	544
RseI	CAYNNNNRTG	1 cut(s)	41
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	5 cut(s)	384, 435, 503, 515, 741
SatI	GCNGC	2 cut(s)	576, 678
Sau3AI	GATC	4 cut(s)	316, 544, 585, 697
Sau96I	GGNCC	1 cut(s)	720
SchI	GAGTC	3 cut(s)	97, 698, 843
ScrFI	CCNGG	1 cut(s)	809
SfaNI	GCATC	3 cut(s)	212, 395, 743
SfcI	CTRYAG	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	651
SmoI	CTYRAG	1 cut(s)	651
Sse9I	AATT	5 cut(s)	163, 176, 284, 333, 618
SsiI	CCGC	5 cut(s)	67, 238, 338, 678, 723
SspI	AATATT	1 cut(s)	646
StyD4I	CCNGG	1 cut(s)	807
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	2 cut(s)	26, 433
TaiI	ACGT	3 cut(s)	351, 553, 613
TaqI	TCGA	5 cut(s)	5, 86, 101, 716, 791
TasI	AATT	5 cut(s)	163, 176, 284, 333, 618
TauI	GCSGC	1 cut(s)	680
TfiI	GAWTC	3 cut(s)	77, 103, 139
Tru1I	TTAA	5 cut(s)	384, 435, 503, 515, 741
Tru9I	TTAA	5 cut(s)	384, 435, 503, 515, 741
TseFI	GTSAC	2 cut(s)	225, 427
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	2 cut(s)	225, 427
TspDTI	ATGAA	3 cut(s)	139, 369, 618
XcmI	CCANNNNNNNNNTGG	1 cut(s)	871
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.