Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Forward (+)

56090869 .. 56092047

Gene Structure 1179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034854

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCGACCTCCTACAACGACAGTAACTATAGCATATATGTGACGGCTTATAGCAGAGGTTTCCGCGACGACGAATCGCTTTCGAGTCCTCGTGTCTCGATTCTTTGGAATGTCATCAGAAGCTACAACTCAGAGAATCTCAGCTTCATCCAAGAGCACAATTCAAGCCACCAATTTGATGATGTATTTGCGTCAATCGCATCAACCAATAATGATTATATGTCACCTCAATCGCGGGATACTATCTCCACGATGATATCTCGAATAAACTTCCCCTTTGAATTAGATAGGCTAAGCTGGAAAGTTCGTTTCGATCGCAATAACACAATAATGCCGCTAAACAACGTTGATGAAATGATAAGCCAAATACTTGAAGTTATTAACGGCATGGTTGTCTCGGGACGCAAGAAGGTGGACTTATTTGTCACAGTTAATATGCAATATACATTACCACTTGAAGAATATCAAGCAAAGGTTCAAGCCAGTAAAGCGAGGGAGTTAACTGAAAGTTTAATCAAGCTCAATGCTGTGCTGCAAAGGGATCTACGTCGTGTTCAAAATCAACATCAGGTTGCTGGTATGATCTGGAGAGCTTATCATGAACAACGTAGAAGAATTGAAAACGAAATGCATGCCAATAATATTTCTCAAGAAATGATGTTGGAGCTGGAGGCCGCTATTAGGGAGTCATTTGATCAAGCAGCATTCAAGTCGAGGCCTGCAAGCAAGGCATCAGTTGAGGCATTGGAGAAGTTTGTGTTGGACGATGGAGATGGTGGGCATCTTTCCAATCTTGTAACAAAGATGATCCAAACATGGTTTATGACTGTTTCCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

280

Amino Acids

32.24

Weight (kDa)

5.74

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	2 cut(s)	66, 235
AciI	CCGC	4 cut(s)	64, 235, 335, 675
AclI	AACGTT	1 cut(s)	345
AclWI	GGATC	2 cut(s)	549, 802
AfiI	CCNNNNNNNGG	1 cut(s)	681
AgsI	TTSAA	8 cut(s)	165, 281, 374, 458, 479, 557, 620, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	743, 775
AluBI	AGCT	6 cut(s)	123, 144, 297, 520, 593, 667
AluI	AGCT	6 cut(s)	123, 144, 297, 520, 593, 667
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	2 cut(s)	100, 400
AlwI	GGATC	2 cut(s)	549, 802
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	2 cut(s)	672, 716
ApeKI	GCWGC	2 cut(s)	532, 701
AsuHPI	GGTGA	1 cut(s)	216
AvaI	CYCGRG	1 cut(s)	397
BauI	CACGAG	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	519, 713
BccI	CCATC	2 cut(s)	761, 767
BceAI	ACGGC	2 cut(s)	60, 400
BcgI	CGANNNNNNTGC	4 cut(s)	614, 648, 693, 727
BciVI	GTATCC	1 cut(s)	232
BclI	TGATCA	1 cut(s)	694
BcoDI	GTCTC	2 cut(s)	100, 400
BfmI	CTRYAG	1 cut(s)	28
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	4 cut(s)	335, 533, 675, 702
BlpI	GCTNAGC	1 cut(s)	293
BlsI	GCNGC	4 cut(s)	336, 534, 676, 703
BmeT110I	CYCGRG	1 cut(s)	397
BmsI	GCATC	3 cut(s)	209, 740, 790
BpmI	CTGGAG	2 cut(s)	607, 689
Bpu1102I	GCTNAGC	1 cut(s)	293
BpuEI	CTTGAG	1 cut(s)	633
Bsc4I	CCNNNNNNNGG	1 cut(s)	681
Bse1I	ACTGG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	681
BseMII	CTCAG	2 cut(s)	144, 154
BseNI	ACTGG	1 cut(s)	483
BseXI	GCAGC	2 cut(s)	519, 713
Bsh1236I	CGCG	2 cut(s)	66, 235
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	2 cut(s)	674, 718
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	681
BsmAI	GTCTC	2 cut(s)	100, 400
BsmFI	GGGAC	1 cut(s)	414
BsmI	GAATGC	1 cut(s)	704
BsnI	GGCC	2 cut(s)	674, 718
BsoBI	CYCGRG	1 cut(s)	397
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	5 cut(s)	313, 541, 582, 694, 807
Bsp1720I	GCTNAGC	1 cut(s)	293
BspACI	CCGC	4 cut(s)	64, 235, 335, 675
BspANI	GGCC	2 cut(s)	674, 718
BspCNI	CTCAG	2 cut(s)	143, 153
BspFNI	CGCG	2 cut(s)	66, 235
BspHI	TCATGA	1 cut(s)	598
BspPI	GGATC	2 cut(s)	549, 802
BsrI	ACTGG	1 cut(s)	483
BssMI	GATC	5 cut(s)	313, 541, 582, 694, 807
BssSI	CACGAG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	90
Bst4CI	ACNGT	3 cut(s)	23, 430, 829
BstC8I	GCNNGC	3 cut(s)	633, 720, 724
BstDEI	CTNAG	3 cut(s)	130, 140, 293
BstF5I	GGATG	1 cut(s)	147
BstFNI	CGCG	2 cut(s)	66, 235
BstKTI	GATC	5 cut(s)	316, 544, 585, 697, 810
BstMAI	GTCTC	2 cut(s)	100, 400
BstMBI	GATC	5 cut(s)	313, 541, 582, 694, 807
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 488, 728
BstNSI	RCATGY	1 cut(s)	635
BstSFI	CTRYAG	1 cut(s)	28
BstUI	CGCG	2 cut(s)	66, 235
BstV1I	GCAGC	2 cut(s)	519, 713
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	674, 718
BtsCI	GGATG	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	633, 720, 724
CciI	TCATGA	1 cut(s)	598
CseI	GACGC	2 cut(s)	180, 411
CviAII	CATG	4 cut(s)	388, 599, 632, 816
DdeI	CTNAG	3 cut(s)	130, 140, 293
DpnI	GATC	5 cut(s)	315, 543, 584, 696, 809
DpnII	GATC	5 cut(s)	313, 541, 582, 694, 807
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
Eco147I	AGGCCT	1 cut(s)	718
Eco32I	GATATC	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	397
EcoRV	GATATC	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	633
FaeI	CATG	4 cut(s)	391, 602, 635, 819
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	4 cut(s)	387, 598, 631, 815
FauI	CCCGC	1 cut(s)	228
FbaI	TGATCA	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	335, 533, 675, 702
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	4 cut(s)	335, 533, 675, 702
GluI	GCNGC	4 cut(s)	335, 533, 675, 702
GsuI	CTGGAG	2 cut(s)	607, 689
HaeIII	GGCC	2 cut(s)	674, 718
HgaI	GACGC	2 cut(s)	180, 411
Hin1II	CATG	4 cut(s)	391, 602, 635, 819
HincII	GTYRAC	2 cut(s)	6, 501
HindII	GTYRAC	2 cut(s)	6, 501
HinfI	GANTC	5 cut(s)	74, 85, 100, 136, 686
HpaI	GTTAAC	1 cut(s)	501
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	3 cut(s)	6, 415, 501
Hpy188I	TCNGA	2 cut(s)	119, 133
Hpy188III	TCNNGA	6 cut(s)	97, 261, 399, 586, 599, 650
Hpy8I	GTNNAC	3 cut(s)	6, 415, 501
Hpy99I	CGWCG	3 cut(s)	71, 74, 552
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	3 cut(s)	23, 430, 829
HpyCH4IV	ACGT	3 cut(s)	345, 547, 607
HpyCH4V	TGCA	4 cut(s)	439, 535, 631, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 488, 728
HpyF3I	CTNAG	3 cut(s)	130, 140, 293
HpySE526I	ACGT	3 cut(s)	345, 547, 607
Hsp92II	CATG	4 cut(s)	391, 602, 635, 819
Ksp22I	TGATCA	1 cut(s)	694
KspAI	GTTAAC	1 cut(s)	501
Kzo9I	GATC	5 cut(s)	313, 541, 582, 694, 807
LmnI	GCTCC	1 cut(s)	664
LpnPI	CCDG	7 cut(s)	283, 496, 554, 561, 571, 653, 732
Lsp1109I	GCAGC	2 cut(s)	519, 713
LweI	GCATC	3 cut(s)	209, 740, 790
MaeII	ACGT	3 cut(s)	345, 547, 607
MaeIII	GTNAC	5 cut(s)	23, 40, 222, 424, 796
MalI	GATC	5 cut(s)	315, 543, 584, 696, 809
MboI	GATC	5 cut(s)	313, 541, 582, 694, 807
MboII	GAAGA	2 cut(s)	470, 624
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	4 cut(s)	160, 173, 281, 615
MlyI	GAGTC	2 cut(s)	94, 695
MmeI	TCCRAC	2 cut(s)	642, 741
MnlI	CCTC	8 cut(s)	19, 50, 99, 237, 486, 664, 708, 733
Mph1103I	ATGCAT	1 cut(s)	633
MseI	TTAA	5 cut(s)	381, 432, 500, 512, 838
MslI	CAYNNNNRTG	2 cut(s)	38, 329
Mva1269I	GAATGC	1 cut(s)	704
MvnI	CGCG	2 cut(s)	66, 235
MwoI	GCNNNNNNNGC	3 cut(s)	197, 488, 728
NdeII	GATC	5 cut(s)	313, 541, 582, 694, 807
NlaIII	CATG	4 cut(s)	391, 602, 635, 819
NmuCI	GTSAC	3 cut(s)	40, 222, 424
NsiI	ATGCAT	1 cut(s)	633
NspI	RCATGY	1 cut(s)	635
PaeI	GCATGC	1 cut(s)	635
PagI	TCATGA	1 cut(s)	598
PceI	AGGCCT	1 cut(s)	718
PctI	GAATGC	1 cut(s)	704
PfeI	GAWTC	3 cut(s)	74, 100, 136
PkrI	GCNGC	4 cut(s)	336, 534, 676, 703
Ple19I	CGATCG	1 cut(s)	316
PleI	GAGTC	2 cut(s)	93, 694
PpsI	GAGTC	2 cut(s)	93, 694
Psp1406I	AACGTT	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	541
PvuI	CGATCG	1 cut(s)	316
RseI	CAYNNNNRTG	2 cut(s)	38, 329
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	5 cut(s)	381, 432, 500, 512, 838
SatI	GCNGC	4 cut(s)	335, 533, 675, 702
Sau3AI	GATC	5 cut(s)	313, 541, 582, 694, 807
SchI	GAGTC	2 cut(s)	94, 695
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	3 cut(s)	209, 740, 790
SfcI	CTRYAG	1 cut(s)	28
SmiMI	CAYNNNNRTG	2 cut(s)	38, 329
SmlI	CTYRAG	1 cut(s)	648
SmoI	CTYRAG	1 cut(s)	648
SphI	GCATGC	1 cut(s)	635
Sse9I	AATT	4 cut(s)	160, 173, 281, 615
SseBI	AGGCCT	1 cut(s)	718
SsiI	CCGC	4 cut(s)	64, 235, 335, 675
SspI	AATATT	1 cut(s)	643
StuI	AGGCCT	1 cut(s)	718
TaaI	ACNGT	3 cut(s)	23, 430, 829
TaiI	ACGT	3 cut(s)	348, 550, 610
TaqI	TCGA	6 cut(s)	5, 83, 98, 262, 312, 713
TasI	AATT	4 cut(s)	160, 173, 281, 615
TauI	GCSGC	2 cut(s)	337, 677
TfiI	GAWTC	3 cut(s)	74, 100, 136
Tru1I	TTAA	5 cut(s)	381, 432, 500, 512, 838
Tru9I	TTAA	5 cut(s)	381, 432, 500, 512, 838
TseFI	GTSAC	3 cut(s)	40, 222, 424
TseI	GCWGC	2 cut(s)	532, 701
Tsp45I	GTSAC	3 cut(s)	40, 222, 424
TspDTI	ATGAA	3 cut(s)	136, 366, 615
XceI	RCATGY	1 cut(s)	635
XmiI	GTMKAC	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.