Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Reverse (-)

9583410 .. 9584417

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G082500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCAGGCTTTCAATCCCAACACGAACGACCATGACTATAGTGTTGTTGTGATGGTAGAAAATAGAGGCTTCCCAGATGATCAATCCCTTGTGAAATTTCCTCAAGTCTCAATTGCCTGGAATGTCTTCAAGAGCTACCATGTTATTCAAGATGGTACCGGCACCACCACTCGATCGAGAAATCCGATAACAAACCCCGACACGACACACAAATTTAATGCTCTACAATCGTTACCGTCACATGAAATTATATCCAATATGTTACATGAGTTACACATCTCATTCCCATTAGACAGGCTACGCTGGAAACCGAGTCGTTTTGTGAATAACACTGAGCCGTTGAACAACGTTGAAGACACGATCAACAACATACGACGGGCCATTGATGGTATGGTTACTGCAGGACAACGTAAGAAGCTGGACGTGATTGTCACCGTCGACAAGCAGAGTAAGATCTCACAGCAACAATATGATGCAATGGTTGCAAGGAGGGAGGTTGAACATATGTTAAATGATTTCCGTTCTATGCTTTCACGTGAAGGTTTGCTACAACAGCCACATGAGGAGGCACGTGACCAAGCTACGAGTAGTGTTGATGCTTTAAGGTGGCGATTGGTTCGGTCGCATTTGAATGAAATAAGGTCACGTGCAGCCGCTGCAGGGATGCTCAATAATATTAATTATGAAGGAGGTTTGGATGTAAATGAAATATTGATCGAAATGGGGATGTTGATGGAGGAGCTCTCAGATGACCATCAAGCTCGACTGCTTAGGGCAAAGCCTGCAACAAAAGCTTCGGTTGAGGCATTAGCCAAGTTAATCAAAATTGATGGAGTAAATTATGGTACTAATAGTGAGTATTGTGTGGTCTGCATGGAGAAGATGTTGAGTGGGGAAGAAGTCACGTGCATGCCATGCTCTCATTTGTTTCATGCAGACTGTGTTGTTCAATGGTTGAAGTTGCGTCACACGTGCCCTGTCTGTAGGTTCAAGTTGCCGACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

336

Amino Acids

38.16

Weight (kDa)

6.36

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	428
Acc65I	GGTACC	1 cut(s)	155
AccB1I	GGYRCC	2 cut(s)	155, 161
AccI	GTMKAC	1 cut(s)	438
AciI	CCGC	1 cut(s)	654
AclI	AACGTT	1 cut(s)	348
AcsI	RAATTY	2 cut(s)	95, 212
AcvI	CACGTG	5 cut(s)	536, 572, 647, 906, 972
AfaI	GTAC	2 cut(s)	157, 847
AfiI	CCNNNNNNNGG	1 cut(s)	660
AflIII	ACRYGT	1 cut(s)	969
AjiI	CACGTC	1 cut(s)	424
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	6 cut(s)	135, 418, 581, 742, 761, 794
AluI	AGCT	6 cut(s)	135, 418, 581, 742, 761, 794
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	1 cut(s)	112
AlwNI	CAGNNNCTG	1 cut(s)	656
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	2 cut(s)	650, 656
ApoI	RAATTY	2 cut(s)	95, 212
AseI	ATTAAT	1 cut(s)	678
Asp700I	GAANNNNTTC	1 cut(s)	125
Asp718I	GGTACC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	424
BaeGI	GKGCMC	1 cut(s)	977
BanI	GGYRCC	2 cut(s)	155, 161
BanII	GRGCYC	1 cut(s)	744
BarI	GAAGNNNNNNTAC	2 cut(s)	531, 563
BbrPI	CACGTG	5 cut(s)	536, 572, 647, 906, 972
BbsI	GAAGAC	2 cut(s)	118, 360
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	2 cut(s)	643, 662
BccI	CCATC	6 cut(s)	46, 146, 380, 727, 762, 824
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	1 cut(s)	118
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	112
BfmI	CTRYAG	4 cut(s)	37, 399, 657, 982
BglII	AGATCT	1 cut(s)	453
BisI	GCNGC	3 cut(s)	651, 654, 657
BlsI	GCNGC	3 cut(s)	652, 655, 658
Bme1390I	CCNGG	1 cut(s)	118
BmgBI	CACGTC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	2 cut(s)	157, 163
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	3 cut(s)	463, 586, 654
BpiI	GAAGAC	2 cut(s)	118, 360
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
Bpu10I	CCTNAGC	1 cut(s)	770
BpuEI	CTTGAG	1 cut(s)	87
BsaAI	YACGTR	5 cut(s)	536, 572, 647, 906, 972
BsaBI	GATNNNNATC	1 cut(s)	753
BsaXI	ACNNNNNCTCC	2 cut(s)	869, 899
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse118I	RCCGGY	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	483
Bse8I	GATNNNNATC	1 cut(s)	753
BseBI	CCWGG	1 cut(s)	118
BseGI	GGATG	3 cut(s)	669, 703, 732
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	2 cut(s)	324, 759
BseRI	GAGGAG	2 cut(s)	578, 752
BseSI	GKGCMC	1 cut(s)	977
BseXI	GCAGC	2 cut(s)	643, 662
BsgI	GTGCAG	1 cut(s)	669
Bsh1285I	CGRYCG	2 cut(s)	176, 623
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	2 cut(s)	155, 161
BsiEI	CGRYCG	2 cut(s)	176, 623
BsiHKAI	GWGCWC	1 cut(s)	744
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmAI	GTCTC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	380
Bsp1286I	GDGCHC	2 cut(s)	744, 977
Bsp143I	GATC	5 cut(s)	79, 173, 360, 453, 714
BspACI	CCGC	1 cut(s)	654
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	2 cut(s)	325, 758
BspLI	GGNNCC	2 cut(s)	157, 163
BspMAI	CTGCAG	2 cut(s)	403, 661
BspT107I	GGYRCC	2 cut(s)	155, 161
BsrDI	GCAATG	1 cut(s)	483
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssMI	GATC	5 cut(s)	79, 173, 360, 453, 714
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	3 cut(s)	237, 436, 941
BstAPI	GCANNNNNTGC	4 cut(s)	482, 656, 782, 915
BstBAI	YACGTR	5 cut(s)	536, 572, 647, 906, 972
BstC8I	GCNNGC	3 cut(s)	6, 783, 911
BstDEI	CTNAG	3 cut(s)	333, 745, 770
BstF5I	GGATG	3 cut(s)	669, 703, 732
BstKTI	GATC	5 cut(s)	82, 176, 363, 456, 717
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	5 cut(s)	79, 173, 360, 453, 714
BstMCI	CGRYCG	2 cut(s)	176, 623
BstMWI	GCNNNNNNNGC	6 cut(s)	482, 553, 656, 782, 791, 915
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	1 cut(s)	913
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	4 cut(s)	37, 399, 657, 982
BstSLI	GKGCMC	1 cut(s)	977
BstV1I	GCAGC	2 cut(s)	643, 662
BstV2I	GAAGAC	2 cut(s)	118, 360
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	380
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	3 cut(s)	669, 703, 732
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	3 cut(s)	6, 783, 911
CaiI	CAGNNNCTG	1 cut(s)	656
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	378
CseI	GACGC	1 cut(s)	953
Csp6I	GTAC	2 cut(s)	156, 846
CviAII	CATG	9 cut(s)	32, 140, 242, 266, 560, 874, 910, 915, 932
CviQI	GTAC	2 cut(s)	156, 846
DdeI	CTNAG	3 cut(s)	333, 745, 770
DpnI	GATC	5 cut(s)	81, 175, 362, 455, 716
DpnII	GATC	5 cut(s)	79, 173, 360, 453, 714
DrdI	GACNNNNNNGTC	1 cut(s)	428
DseDI	GACNNNNNNGTC	1 cut(s)	428
Ecl136II	GAGCTC	1 cut(s)	742
Eco24I	GRGCYC	1 cut(s)	744
Eco53kI	GAGCTC	1 cut(s)	742
Eco72I	CACGTG	5 cut(s)	536, 572, 647, 906, 972
EcoICRI	GAGCTC	1 cut(s)	742
EcoRII	CCWGG	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	744
FaeI	CATG	9 cut(s)	35, 143, 245, 269, 563, 877, 913, 918, 935
FatI	CATG	9 cut(s)	31, 139, 241, 265, 559, 873, 909, 914, 931
FauNDI	CATATG	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	79
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	3 cut(s)	651, 654, 657
FokI	GGATG	3 cut(s)	676, 710, 739
FriOI	GRGCYC	1 cut(s)	744
Fsp4HI	GCNGC	3 cut(s)	651, 654, 657
GluI	GCNGC	3 cut(s)	651, 654, 657
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	1 cut(s)	953
Hin1II	CATG	9 cut(s)	35, 143, 245, 269, 563, 877, 913, 918, 935
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	1 cut(s)	792
HinfI	GANTC	1 cut(s)	313
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	2 cut(s)	186, 748
Hpy188III	TCNNGA	3 cut(s)	130, 149, 177
Hpy8I	GTNNAC	1 cut(s)	439
Hpy99I	CGWCG	2 cut(s)	378, 440
HpyAV	CCTTC	2 cut(s)	533, 680
HpyCH4III	ACNGT	3 cut(s)	237, 436, 941
HpyCH4IV	ACGT	8 cut(s)	348, 409, 423, 535, 571, 646, 905, 971
HpyF10VI	GCNNNNNNNGC	6 cut(s)	482, 553, 656, 782, 791, 915
HpyF3I	CTNAG	3 cut(s)	333, 745, 770
HpySE526I	ACGT	8 cut(s)	348, 409, 423, 535, 571, 646, 905, 971
Hsp92II	CATG	9 cut(s)	35, 143, 245, 269, 563, 877, 913, 918, 935
KpnI	GGTACC	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	5 cut(s)	79, 173, 360, 453, 714
LmnI	GCTCC	1 cut(s)	739
Lsp1109I	GCAGC	2 cut(s)	643, 662
LweI	GCATC	3 cut(s)	463, 586, 654
MaeII	ACGT	8 cut(s)	348, 409, 423, 535, 571, 646, 905, 971
MalI	GATC	5 cut(s)	81, 175, 362, 455, 716
MboI	GATC	5 cut(s)	79, 173, 360, 453, 714
MboII	GAAGA	4 cut(s)	118, 365, 892, 908
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	2 cut(s)	744, 977
MluCI	AATT	7 cut(s)	95, 111, 212, 246, 679, 825, 838
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	9 cut(s)	59, 111, 483, 487, 556, 559, 683, 730, 796
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	5 cut(s)	216, 509, 602, 678, 818
MslI	CAYNNNNRTG	2 cut(s)	630, 908
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	118
MunI	CAATTG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	6 cut(s)	482, 553, 656, 782, 791, 915
NdeI	CATATG	1 cut(s)	504
NdeII	GATC	5 cut(s)	79, 173, 360, 453, 714
NlaIII	CATG	9 cut(s)	35, 143, 245, 269, 563, 877, 913, 918, 935
NlaIV	GGNNCC	2 cut(s)	157, 163
NmuCI	GTSAC	6 cut(s)	237, 430, 572, 642, 901, 965
NspI	RCATGY	1 cut(s)	913
PaeI	GCATGC	1 cut(s)	913
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	125
PkrI	GCNGC	3 cut(s)	652, 655, 658
Ple19I	CGATCG	1 cut(s)	176
PleI	GAGTC	1 cut(s)	321
PmaCI	CACGTG	5 cut(s)	536, 572, 647, 906, 972
PmlI	CACGTG	5 cut(s)	536, 572, 647, 906, 972
PpsI	GAGTC	1 cut(s)	321
Ppu21I	YACGTR	5 cut(s)	536, 572, 647, 906, 972
PshBI	ATTAAT	1 cut(s)	678
Psp124BI	GAGCTC	1 cut(s)	744
Psp1406I	AACGTT	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	116
PspCI	CACGTG	5 cut(s)	536, 572, 647, 906, 972
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	157, 163
PspPI	GGNCC	1 cut(s)	378
PstI	CTGCAG	2 cut(s)	403, 661
PstNI	CAGNNNCTG	1 cut(s)	656
PsuI	RGATCY	1 cut(s)	453
PvuI	CGATCG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	157, 847
RsaNI	GTAC	2 cut(s)	156, 846
RseI	CAYNNNNRTG	2 cut(s)	630, 908
SacI	GAGCTC	1 cut(s)	744
SalI	GTCGAC	1 cut(s)	437
SaqAI	TTAA	5 cut(s)	216, 509, 602, 678, 818
SatI	GCNGC	3 cut(s)	651, 654, 657
Sau3AI	GATC	5 cut(s)	79, 173, 360, 453, 714
Sau96I	GGNCC	1 cut(s)	378
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	744, 977
SfaNI	GCATC	3 cut(s)	463, 586, 654
SfcI	CTRYAG	4 cut(s)	37, 399, 657, 982
SmiMI	CAYNNNNRTG	2 cut(s)	630, 908
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
SphI	GCATGC	1 cut(s)	913
Sse9I	AATT	7 cut(s)	95, 111, 212, 246, 679, 825, 838
SsiI	CCGC	1 cut(s)	654
SspI	AATATT	2 cut(s)	676, 711
SstI	GAGCTC	1 cut(s)	744
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	3 cut(s)	237, 436, 941
TaiI	ACGT	8 cut(s)	351, 412, 426, 538, 574, 649, 908, 974
TaqI	TCGA	5 cut(s)	172, 176, 438, 717, 763
TaqII	GACCGA	1 cut(s)	609
TasI	AATT	7 cut(s)	95, 111, 212, 246, 679, 825, 838
TauI	GCSGC	1 cut(s)	656
Tru1I	TTAA	5 cut(s)	216, 509, 602, 678, 818
Tru9I	TTAA	5 cut(s)	216, 509, 602, 678, 818
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	6 cut(s)	237, 430, 572, 642, 901, 965
TseI	GCWGC	2 cut(s)	650, 656
Tsp45I	GTSAC	6 cut(s)	237, 430, 572, 642, 901, 965
TspDTI	ATGAA	5 cut(s)	258, 648, 699, 720, 920
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	1 cut(s)	337
VspI	ATTAAT	1 cut(s)	678
XapI	RAATTY	2 cut(s)	95, 212
XceI	RCATGY	1 cut(s)	913
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.