Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Forward (+)

9592682 .. 9594143

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G082800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCAAGCTTTCAGTTCCAACAGCAGCCACGACTATGACATTTTTGTCACGGTAGAGCAGAGAGGTTTCTCAGATGATGAATCGCTTCCCATTCCCATTCCCATTCCTGAGGTCTCGATTCTTTTGAATGTCGTCGTAAGCTACAATGTTAATTCAGATCTTTCTCTGCCCACCAGAGCTTACGATGCAAGACTCGAACTTGATCATCCTTTTCACTCATTCAAGTCCAATTCACGAGATATTTTATCAAACATGATCGATGCAATGCACATTCCGTTCCCATTGGACCGGCTCCGATGGAAAACGCAGCGTTTTGGTGGTGGCAACACAGAGCCACTCGAGAGCGTTGAAGCTATGGTAAGCAGAATGGCTCTTGAGGCTAGTACCATGGTGGAAAATCATGGAGCTGCTGGACTTAACAAGAAGCTCGGCATACTTGTCACAGTTGAGAAGGAGATTCCAATGCTTGCACACCAACTGTTCGACGAAATGCAGCAGTTGGAGGTTGAGGACAGGGAGCTCAGGGATGAGGTGAACTCGCAAATAGAGACATATCATGCTCCGCTTGCACTTTCTTCGGGTGGTATTGAACAAATAGGGGAGGGTTGGGCACGGCGGCTGAGGGAAGGCTGGTACTCACTCGCATTCCGGGCTAGTGTTATGCTTTCTGCTGATGATGTTCATCAAATGGAGGATGTTCTAGATAGGCTATTGAGCCTCCGGGACAGTATGATAAGAACTTGTGCAAACATGCGCTCTTTCTTGGATACATTGGCACAAAACACTGGGGATATCGACGATGGCGCATTGACAGAAGCAGCTGTGAGAGAGTCATTAGAGGAAGCAGTGTTCAGCCCAATGCCTGCAACTAGAGCATCAGTTGATGCCTTGGAGAAGTTTGTGTTTGATGGAGGGGTGCAACGCGGTTCGAGCAGCGATCAACGTTGTGTGGTTTGCTTGGGAAAGATGTTGAGTGGGGATCAAGTCACTTGCTTGCCATGCTCTCACATGTTTCATGGACATTGCATTGAACAGTGGTTGAGGTATGGTCATGTATGCCCTCTGTGTAGGTTCAAGTTGCCAACTGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

365

Amino Acids

40.79

Weight (kDa)

4.88

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AccII	CGCG	1 cut(s)	924
AciI	CCGC	3 cut(s)	563, 616, 924
AclI	AACGTT	1 cut(s)	943
AclWI	GGATC	1 cut(s)	987
AfaI	GTAC	2 cut(s)	385, 635
AflIII	ACRYGT	1 cut(s)	1008
AgsI	TTSAA	6 cut(s)	127, 223, 350, 590, 1031, 1075
AloI	GAACNNNNNNTCC	2 cut(s)	833, 865
AluBI	AGCT	8 cut(s)	8, 141, 179, 353, 407, 427, 520, 821
AluI	AGCT	8 cut(s)	8, 141, 179, 353, 407, 427, 520, 821
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	2 cut(s)	118, 542
AlwI	GGATC	1 cut(s)	987
Ama87I	CYCGRG	1 cut(s)	338
ApeKI	GCWGC	6 cut(s)	24, 307, 407, 493, 818, 933
Asp700I	GAANNNNTTC	1 cut(s)	84
AspLEI	GCGC	2 cut(s)	756, 806
AspS9I	GGNCC	1 cut(s)	286
AsuC2I	CCSGG	2 cut(s)	650, 722
AsuHPI	GGTGA	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	286
AxyI	CCTNAGG	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	613
BanII	GRGCYC	1 cut(s)	522
BauI	CACGAG	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	620
BbvI	GCAGC	6 cut(s)	36, 319, 394, 505, 830, 945
BccI	CCATC	3 cut(s)	291, 794, 902
BceAI	ACGGC	1 cut(s)	629
BcgI	CGANNNNNNTGC	2 cut(s)	558, 592
BciVI	GTATCC	1 cut(s)	760
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	2 cut(s)	650, 722
BcoDI	GTCTC	2 cut(s)	118, 542
BfaI	CTAG	4 cut(s)	381, 654, 701, 870
BfuI	GTATCC	1 cut(s)	760
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	7 cut(s)	25, 308, 408, 494, 617, 819, 934
BlsI	GCNGC	7 cut(s)	26, 309, 409, 495, 618, 820, 935
Bme1390I	CCNGG	2 cut(s)	650, 722
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	2 cut(s)	650, 722
BmrI	ACTGGG	1 cut(s)	795
BmsI	GCATC	4 cut(s)	175, 250, 874, 884
BmuI	ACTGGG	1 cut(s)	795
BplI	GAGNNNNNCTC	2 cut(s)	521, 553
Bpu10I	CCTNAGC	2 cut(s)	521, 620
BpuEI	CTTGAG	1 cut(s)	395
BpuMI	CCSGG	2 cut(s)	650, 722
Bsa29I	ATCGAT	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	681
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	387, 888
Bse118I	RCCGGY	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	790
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	2 cut(s)	270, 1021
Bse8I	GATNNNNATC	1 cut(s)	681
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	387, 888
BseGI	GGATG	3 cut(s)	205, 532, 700
BseJI	GATNNNNATC	1 cut(s)	681
BseMI	GCAATG	2 cut(s)	270, 1021
BseMII	CTCAG	4 cut(s)	84, 99, 535, 611
BseNI	ACTGG	1 cut(s)	790
BseSI	GKGCMC	1 cut(s)	613
BseXI	GCAGC	6 cut(s)	36, 319, 394, 505, 830, 945
Bsh1236I	CGCG	1 cut(s)	924
BshVI	ATCGAT	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	522
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	3 cut(s)	289, 649, 721
BslFI	GGGAC	1 cut(s)	737
BsmAI	GTCTC	2 cut(s)	118, 542
BsmFI	GGGAC	1 cut(s)	737
BsmI	GAATGC	1 cut(s)	644
Bso31I	GGTCTC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	522, 613
Bsp143I	GATC	5 cut(s)	157, 202, 255, 937, 979
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	3 cut(s)	563, 616, 924
BspCNI	CTCAG	4 cut(s)	83, 100, 534, 612
BspDI	ATCGAT	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	924
BspLI	GGNNCC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	987
BspTNI	GGTCTC	1 cut(s)	118
BsrDI	GCAATG	2 cut(s)	270, 1021
BsrFI	RCCGGY	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	790
BssAI	RCCGGY	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	387, 888
BssMI	GATC	5 cut(s)	157, 202, 255, 937, 979
BssSI	CACGAG	1 cut(s)	234
BssT1I	CCWWGG	2 cut(s)	387, 888
Bst2BI	CACGAG	1 cut(s)	234
Bst4CI	ACNGT	5 cut(s)	52, 445, 480, 728, 1035
BstC8I	GCNNGC	5 cut(s)	6, 468, 567, 864, 995
BstDEI	CTNAG	4 cut(s)	70, 108, 521, 620
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	3 cut(s)	205, 532, 700
BstFNI	CGCG	1 cut(s)	924
BstHHI	GCGC	2 cut(s)	756, 806
BstKTI	GATC	5 cut(s)	160, 205, 258, 940, 982
BstMAI	GTCTC	2 cut(s)	118, 542
BstMBI	GATC	5 cut(s)	157, 202, 255, 937, 979
BstMWI	GCNNNNNNNGC	7 cut(s)	185, 377, 566, 650, 872, 930, 999
BstNSI	RCATGY	2 cut(s)	754, 1012
BstSCI	CCNGG	2 cut(s)	648, 720
BstSLI	GKGCMC	1 cut(s)	613
BstUI	CGCG	1 cut(s)	924
BstV1I	GCAGC	6 cut(s)	36, 319, 394, 505, 830, 945
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	258
Bsu36I	CCTNAGG	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	760
BsuTUI	ATCGAT	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	3 cut(s)	205, 532, 700
BtsI	GCAGTG	1 cut(s)	852
BtsIMutI	CAGTG	3 cut(s)	783, 852, 1040
Cac8I	GCNNGC	5 cut(s)	6, 468, 567, 864, 995
CfoI	GCGC	2 cut(s)	756, 806
Cfr10I	RCCGGY	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	286
ClaI	ATCGAT	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	384, 634
CviAII	CATG	9 cut(s)	253, 388, 401, 557, 751, 999, 1009, 1016, 1052
CviQI	GTAC	2 cut(s)	384, 634
DdeI	CTNAG	4 cut(s)	70, 108, 521, 620
DpnI	GATC	5 cut(s)	159, 204, 257, 939, 981
DpnII	GATC	5 cut(s)	157, 202, 255, 937, 979
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Ecl136II	GAGCTC	1 cut(s)	520
Eco130I	CCWWGG	2 cut(s)	387, 888
Eco24I	GRGCYC	1 cut(s)	522
Eco31I	GGTCTC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	793
Eco47I	GGWCC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	520
Eco81I	CCTNAGG	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	520
EcoRV	GATATC	1 cut(s)	793
EcoT14I	CCWWGG	2 cut(s)	387, 888
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	2 cut(s)	387, 888
FaeI	CATG	9 cut(s)	256, 391, 404, 560, 754, 1002, 1012, 1019, 1055
FaqI	GGGAC	1 cut(s)	737
FatI	CATG	9 cut(s)	252, 387, 400, 556, 750, 998, 1008, 1015, 1051
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	7 cut(s)	25, 308, 408, 494, 617, 819, 934
FokI	GGATG	3 cut(s)	192, 539, 707
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	7 cut(s)	25, 308, 408, 494, 617, 819, 934
FspBI	CTAG	4 cut(s)	381, 654, 701, 870
GlaI	GCGC	2 cut(s)	755, 805
GluI	GCNGC	7 cut(s)	25, 308, 408, 494, 617, 819, 934
HapII	CCGG	3 cut(s)	289, 649, 721
HhaI	GCGC	2 cut(s)	756, 806
Hin1II	CATG	9 cut(s)	256, 391, 404, 560, 754, 1002, 1012, 1019, 1055
Hin6I	GCGC	2 cut(s)	754, 804
HinP1I	GCGC	2 cut(s)	754, 804
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	5 cut(s)	80, 118, 192, 457, 830
HpaII	CCGG	3 cut(s)	289, 649, 721
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	3 cut(s)	73, 157, 296
Hpy188III	TCNNGA	6 cut(s)	107, 115, 234, 340, 374, 701
Hpy8I	GTNNAC	1 cut(s)	535
Hpy99I	CGWCG	3 cut(s)	137, 488, 800
HpyAV	CCTTC	2 cut(s)	445, 620
HpyCH4III	ACNGT	5 cut(s)	52, 445, 480, 728, 1035
HpyCH4IV	ACGT	1 cut(s)	943
HpyF10VI	GCNNNNNNNGC	7 cut(s)	185, 377, 566, 650, 872, 930, 999
HpyF3I	CTNAG	4 cut(s)	70, 108, 521, 620
HpySE526I	ACGT	1 cut(s)	943
Hsp92II	CATG	9 cut(s)	256, 391, 404, 560, 754, 1002, 1012, 1019, 1055
HspAI	GCGC	2 cut(s)	754, 804
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	5 cut(s)	157, 202, 255, 937, 979
LmnI	GCTCC	4 cut(s)	297, 404, 517, 565
Lsp1109I	GCAGC	6 cut(s)	36, 319, 394, 505, 830, 945
LweI	GCATC	4 cut(s)	175, 250, 874, 884
MaeI	CTAG	4 cut(s)	381, 654, 701, 870
MaeII	ACGT	1 cut(s)	943
MaeIII	GTNAC	3 cut(s)	46, 439, 985
MalI	GATC	5 cut(s)	159, 204, 257, 939, 981
MboI	GATC	5 cut(s)	157, 202, 255, 937, 979
MboII	GAAGA	1 cut(s)	567
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	2 cut(s)	522, 613
MluCI	AATT	2 cut(s)	151, 229
MlyI	GAGTC	2 cut(s)	186, 839
MmeI	TCCRAC	2 cut(s)	42, 480
MroXI	GAANNNNTTC	1 cut(s)	84
MseI	TTAA	2 cut(s)	150, 417
MslI	CAYNNNNRTG	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	821
MspI	CCGG	3 cut(s)	289, 649, 721
MspR9I	CCNGG	2 cut(s)	650, 722
Mva1269I	GAATGC	1 cut(s)	644
MvnI	CGCG	1 cut(s)	924
MwoI	GCNNNNNNNGC	7 cut(s)	185, 377, 566, 650, 872, 930, 999
NciI	CCSGG	2 cut(s)	650, 722
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	5 cut(s)	157, 202, 255, 937, 979
NlaIII	CATG	9 cut(s)	256, 391, 404, 560, 754, 1002, 1012, 1019, 1055
NlaIV	GGNNCC	1 cut(s)	293
NmeAIII	GCCGAG	1 cut(s)	408
NmuCI	GTSAC	3 cut(s)	46, 439, 985
NspI	RCATGY	2 cut(s)	754, 1012
PaeR7I	CTCGAG	1 cut(s)	338
PciI	ACATGT	1 cut(s)	1008
PctI	GAATGC	1 cut(s)	644
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	3 cut(s)	80, 118, 457
PfoI	TCCNGGA	1 cut(s)	720
PkrI	GCNGC	7 cut(s)	26, 309, 409, 495, 618, 820, 935
PleI	GAGTC	2 cut(s)	186, 838
PpsI	GAGTC	2 cut(s)	186, 838
PscI	ACATGT	1 cut(s)	1008
Psp124BI	GAGCTC	1 cut(s)	522
Psp1406I	AACGTT	1 cut(s)	943
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	2 cut(s)	385, 635
RsaNI	GTAC	2 cut(s)	384, 634
RseI	CAYNNNNRTG	1 cut(s)	33
SacI	GAGCTC	1 cut(s)	522
SaqAI	TTAA	2 cut(s)	150, 417
SatI	GCNGC	7 cut(s)	25, 308, 408, 494, 617, 819, 934
Sau3AI	GATC	5 cut(s)	157, 202, 255, 937, 979
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	2 cut(s)	186, 839
ScrFI	CCNGG	2 cut(s)	650, 722
SduI	GDGCHC	2 cut(s)	522, 613
SfaNI	GCATC	4 cut(s)	175, 250, 874, 884
Sfr274I	CTCGAG	1 cut(s)	338
SinI	GGWCC	1 cut(s)	286
SlaI	CTCGAG	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	338, 374
SmoI	CTYRAG	2 cut(s)	338, 374
Sse9I	AATT	2 cut(s)	151, 229
SsiI	CCGC	3 cut(s)	563, 616, 924
SspMI	CTAG	4 cut(s)	381, 654, 701, 870
SstI	GAGCTC	1 cut(s)	522
StyD4I	CCNGG	2 cut(s)	648, 720
StyI	CCWWGG	2 cut(s)	387, 888
TaaI	ACNGT	5 cut(s)	52, 445, 480, 728, 1035
TaiI	ACGT	1 cut(s)	946
TaqI	TCGA	7 cut(s)	116, 195, 258, 339, 483, 795, 929
TasI	AATT	2 cut(s)	151, 229
TauI	GCSGC	1 cut(s)	619
TfiI	GAWTC	3 cut(s)	80, 118, 457
Tru1I	TTAA	2 cut(s)	150, 417
Tru9I	TTAA	2 cut(s)	150, 417
TscAI	CASTG	3 cut(s)	790, 852, 1040
TseFI	GTSAC	3 cut(s)	46, 439, 985
TseI	GCWGC	6 cut(s)	24, 307, 407, 493, 818, 933
Tsp45I	GTSAC	3 cut(s)	46, 439, 985
TspDTI	ATGAA	3 cut(s)	93, 671, 1004
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	3 cut(s)	790, 852, 1040
VpaK11BI	GGWCC	1 cut(s)	286
XbaI	TCTAGA	1 cut(s)	700
XceI	RCATGY	2 cut(s)	754, 1012
XhoI	CTCGAG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	4 cut(s)	381, 654, 701, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.