Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Reverse (-)

16591543 .. 16592529

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G016270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTCGACTTCATACAACAACGACGCTAATTACAGCATATATGTGATGGCCTACAGCGGAGGTTTCCCCGATGATCAAGAGCTTTTGAGTCCTCGTGTCTCGATCTCTTGGAATGTCATCGGAAGCTACAAGTCAGAGAATGTCAATTTCAAGAGGTCGATCGAATACCACAATTCAAGCCACTCATTTCATGATGTATTTGCATCAATCGCATCTACCAATGATGATTATATGTCACCTCAATCCCGGGATATAATCTCCAGGATGATAGCTCATATAAACTTCCCCTTCGAATTAGATATGCTGAGCTGGAAACGTCGTTTCGATCGCAATAACACGATAAAGCCACTAAACAGCGTTGACGATATAATAAGCCAAATACTTGAAGTTATTAACGGTATGGTTGTTTCGGGACGCAAGAAGGTGGACTTAATTGTCGAAGTTGATAAACAATATACACTAGCACATGAAGAATATCAAGCAAAGGTTCAGGCGATTAAAGAGAGGGAATTAACTGAAATTCGCAGGAATCTCGATGCTGTGCTACTAAGGGAGCTGGCTCGTGTTCAAAATCAACATCAGGCTGATATGATAAAAAGAGCTTATGCTGAACAATGTAGACGAATTGAAGACGAAATGCGTGCCAATAATATTTCTCAAGAAAGGATCATGGAAAATGCAAGGTTCTTGGAGCAAGAGGCTATTAGGGAGTCATTTGATCAAGTAGTGAACAGGCCGAGGCCTGCAAGTAAGGCGTCGATCCAGGCATTGGAGAAGTTTGTGTTGGAGGATAAAGACGGTGGCTTGAGTTCGATTTGTGTGATTTGCAGGGAGGAGTTGACTGCTTGTAAAGTCATTCGCATGCCATGCTCCCATATGTTCCATGATGACTGCATTGTAGAATGGTTAAACCACTGGGGTCATACGTGTCCTCTTTGCAAGTTCAAGTTGCCAAAAGAGAGAAGAAGCATGGAAGTGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

328

Amino Acids

38.17

Weight (kDa)

6.23

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	271 - 314	7.4e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	273 - 314	3.8e-09	Ring finger domain
zf-RING_11	PF17123	273 - 299	2.4e-06	RING-like zinc finger
zf-C3HC4_2	PF13923	273 - 313	1e-05	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
AccB7I	CCANNNNNTGG	1 cut(s)	769
AccI	GTMKAC	2 cut(s)	5, 619
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	2 cut(s)	674, 754
AcsI	RAATTY	1 cut(s)	519
AcyI	GRCGYC	1 cut(s)	755
AfiI	CCNNNNNNNGG	1 cut(s)	769
AflIII	ACRYGT	1 cut(s)	926
AgsI	TTSAA	6 cut(s)	151, 177, 386, 569, 629, 946
AjnI	CCWGG	2 cut(s)	260, 762
AjuI	GAANNNNNNNTTGG	2 cut(s)	767, 799
AluBI	AGCT	6 cut(s)	82, 126, 272, 309, 556, 602
AluI	AGCT	6 cut(s)	82, 126, 272, 309, 556, 602
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	2 cut(s)	674, 754
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	3 cut(s)	48, 734, 740
ApoI	RAATTY	1 cut(s)	519
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	1 cut(s)	228
AsuII	TTCGAA	1 cut(s)	291
AvaI	CYCGRG	1 cut(s)	246
BauI	CACGAG	2 cut(s)	93, 561
BbsI	GAAGAC	1 cut(s)	636
BccI	CCATC	1 cut(s)	40
BcgI	CGANNNNNNTGC	4 cut(s)	514, 548, 623, 657
BciT130I	CCWGG	2 cut(s)	262, 764
BclI	TGATCA	2 cut(s)	73, 718
BcnI	CCSGG	2 cut(s)	247, 248
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	52
BlpI	GCTNAGC	1 cut(s)	305
Bme1390I	CCNGG	4 cut(s)	247, 248, 262, 764
BmeT110I	CYCGRG	1 cut(s)	246
BmrFI	CCNGG	4 cut(s)	247, 248, 262, 764
BmrI	ACTGGG	1 cut(s)	925
BmsI	GCATC	3 cut(s)	212, 221, 526
BmuI	ACTGGG	1 cut(s)	925
BpiI	GAAGAC	1 cut(s)	636
BpmI	CTGGAG	1 cut(s)	244
Bpu1102I	GCTNAGC	1 cut(s)	305
Bpu14I	TTCGAA	1 cut(s)	291
BpuEI	CTTGAG	2 cut(s)	642, 826
BpuMI	CCSGG	2 cut(s)	247, 248
BsaAI	YACGTR	1 cut(s)	927
BsaHI	GRCGYC	1 cut(s)	755
BsaJI	CCNNGG	2 cut(s)	246, 737
Bsc4I	CCNNNNNNNGG	1 cut(s)	769
Bse1I	ACTGG	1 cut(s)	920
BseBI	CCWGG	2 cut(s)	262, 764
BseDI	CCNNGG	2 cut(s)	246, 737
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	769
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	920
BseRI	GAGGAG	1 cut(s)	848
Bsh1285I	CGRYCG	2 cut(s)	162, 328
BshFI	GGCC	3 cut(s)	50, 736, 742
BsiEI	CGRYCG	2 cut(s)	162, 328
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	769
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	3 cut(s)	50, 736, 742
BsoBI	CYCGRG	1 cut(s)	246
Bsp119I	TTCGAA	1 cut(s)	291
Bsp143I	GATC	7 cut(s)	73, 102, 159, 325, 666, 718, 759
Bsp1720I	GCTNAGC	1 cut(s)	305
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	3 cut(s)	50, 736, 742
BspCNI	CTCAG	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	190
BspPI	GGATC	2 cut(s)	674, 754
BspT104I	TTCGAA	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	920
BssECI	CCNNGG	2 cut(s)	246, 737
BssMI	GATC	7 cut(s)	73, 102, 159, 325, 666, 718, 759
BssNI	GRCGYC	1 cut(s)	755
BssSI	CACGAG	2 cut(s)	93, 561
Bst2BI	CACGAG	2 cut(s)	93, 561
Bst2UI	CCWGG	2 cut(s)	262, 764
Bst4CI	ACNGT	2 cut(s)	398, 800
BstACI	GRCGYC	1 cut(s)	755
BstAPI	GCANNNNNTGC	1 cut(s)	867
BstBAI	YACGTR	1 cut(s)	927
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	4 cut(s)	558, 642, 744, 863
BstDEI	CTNAG	2 cut(s)	305, 548
BstF5I	GGATG	1 cut(s)	270
BstKTI	GATC	7 cut(s)	76, 105, 162, 328, 669, 721, 762
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	7 cut(s)	73, 102, 159, 325, 666, 718, 759
BstMCI	CGRYCG	2 cut(s)	162, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 752, 867
BstNI	CCWGG	2 cut(s)	262, 764
BstNSI	RCATGY	1 cut(s)	865
BstSCI	CCNGG	4 cut(s)	245, 246, 260, 762
BstSFI	CTRYAG	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	636
BsuRI	GGCC	3 cut(s)	50, 736, 742
BtsCI	GGATG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	913
Cac8I	GCNNGC	4 cut(s)	558, 642, 744, 863
CciI	TCATGA	1 cut(s)	190
Cfr9I	CCCGGG	1 cut(s)	246
CseI	GACGC	3 cut(s)	32, 423, 744
CviAII	CATG	7 cut(s)	191, 467, 670, 862, 867, 884, 970
DdeI	CTNAG	2 cut(s)	305, 548
DpnI	GATC	7 cut(s)	75, 104, 161, 327, 668, 720, 761
DpnII	GATC	7 cut(s)	73, 102, 159, 325, 666, 718, 759
DrdI	GACNNNNNNGTC	1 cut(s)	434
DseDI	GACNNNNNNGTC	1 cut(s)	434
Eco147I	AGGCCT	1 cut(s)	742
Eco88I	CYCGRG	1 cut(s)	246
EcoRII	CCWGG	2 cut(s)	260, 762
FaeI	CATG	7 cut(s)	194, 470, 673, 865, 870, 887, 973
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	7 cut(s)	190, 466, 669, 861, 866, 883, 969
FauNDI	CATATG	1 cut(s)	876
FbaI	TGATCA	2 cut(s)	73, 718
FblI	GTMKAC	2 cut(s)	5, 619
FokI	GGATG	1 cut(s)	277
FspBI	CTAG	1 cut(s)	461
GsuI	CTGGAG	1 cut(s)	244
HaeIII	GGCC	3 cut(s)	50, 736, 742
HapII	CCGG	1 cut(s)	247
HgaI	GACGC	3 cut(s)	32, 423, 744
Hin1I	GRCGYC	1 cut(s)	755
Hin1II	CATG	7 cut(s)	194, 470, 673, 865, 870, 887, 973
HincII	GTYRAC	3 cut(s)	6, 361, 840
HindII	GTYRAC	3 cut(s)	6, 361, 840
HinfI	GANTC	3 cut(s)	88, 529, 710
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	1 cut(s)	228
Hpy166II	GTNNAC	6 cut(s)	6, 361, 427, 620, 730, 840
Hpy188I	TCNGA	2 cut(s)	122, 136
Hpy188III	TCNNGA	7 cut(s)	77, 100, 151, 191, 411, 533, 659
Hpy8I	GTNNAC	6 cut(s)	6, 361, 427, 620, 730, 840
Hpy99I	CGWCG	3 cut(s)	26, 321, 760
HpyAV	CCTTC	2 cut(s)	298, 415
HpyCH4III	ACNGT	2 cut(s)	398, 800
HpyCH4IV	ACGT	2 cut(s)	316, 926
HpyCH4V	TGCA	6 cut(s)	203, 680, 746, 828, 894, 939
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 752, 867
HpyF3I	CTNAG	2 cut(s)	305, 548
HpySE526I	ACGT	2 cut(s)	316, 926
Hsp92I	GRCGYC	1 cut(s)	755
Hsp92II	CATG	7 cut(s)	194, 470, 673, 865, 870, 887, 973
Ksp22I	TGATCA	2 cut(s)	73, 718
Kzo9I	GATC	7 cut(s)	73, 102, 159, 325, 666, 718, 759
LmnI	GCTCC	3 cut(s)	553, 691, 875
LweI	GCATC	3 cut(s)	212, 221, 526
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	2 cut(s)	316, 926
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	7 cut(s)	75, 104, 161, 327, 668, 720, 761
MboI	GATC	7 cut(s)	73, 102, 159, 325, 666, 718, 759
MboII	GAAGA	3 cut(s)	482, 641, 975
MluCI	AATT	8 cut(s)	28, 145, 172, 293, 432, 509, 519, 624
MlyI	GAGTC	2 cut(s)	97, 719
MmeI	TCCRAC	1 cut(s)	765
MseI	TTAA	5 cut(s)	393, 431, 498, 512, 908
MslI	CAYNNNNRTG	3 cut(s)	41, 860, 974
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	4 cut(s)	247, 248, 262, 764
MvaI	CCWGG	2 cut(s)	262, 764
MwoI	GCNNNNNNNGC	3 cut(s)	209, 752, 867
NciI	CCSGG	2 cut(s)	247, 248
NdeI	CATATG	1 cut(s)	876
NdeII	GATC	7 cut(s)	73, 102, 159, 325, 666, 718, 759
NlaIII	CATG	7 cut(s)	194, 470, 673, 865, 870, 887, 973
NmeAIII	GCCGAG	1 cut(s)	762
NmuCI	GTSAC	1 cut(s)	234
NspI	RCATGY	1 cut(s)	865
NspV	TTCGAA	1 cut(s)	291
PaeI	GCATGC	1 cut(s)	865
PagI	TCATGA	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	742
PfeI	GAWTC	1 cut(s)	529
PflMI	CCANNNNNTGG	1 cut(s)	769
PfoI	TCCNGGA	1 cut(s)	260
Ple19I	CGATCG	2 cut(s)	162, 328
PleI	GAGTC	2 cut(s)	96, 718
PpsI	GAGTC	2 cut(s)	96, 718
Ppu21I	YACGTR	1 cut(s)	927
Psp6I	CCWGG	2 cut(s)	260, 762
PspGI	CCWGG	2 cut(s)	260, 762
PvuI	CGATCG	2 cut(s)	162, 328
RseI	CAYNNNNRTG	3 cut(s)	41, 860, 974
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	5 cut(s)	393, 431, 498, 512, 908
Sau3AI	GATC	7 cut(s)	73, 102, 159, 325, 666, 718, 759
SchI	GAGTC	2 cut(s)	97, 719
ScrFI	CCNGG	4 cut(s)	247, 248, 262, 764
SfaNI	GCATC	3 cut(s)	212, 221, 526
SfcI	CTRYAG	1 cut(s)	52
SfuI	TTCGAA	1 cut(s)	291
SmaI	CCCGGG	1 cut(s)	248
SmiMI	CAYNNNNRTG	3 cut(s)	41, 860, 974
SmlI	CTYRAG	2 cut(s)	657, 805
SmoI	CTYRAG	2 cut(s)	657, 805
SphI	GCATGC	1 cut(s)	865
Sse9I	AATT	8 cut(s)	28, 145, 172, 293, 432, 509, 519, 624
SseBI	AGGCCT	1 cut(s)	742
SsiI	CCGC	1 cut(s)	57
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	1 cut(s)	461
StuI	AGGCCT	1 cut(s)	742
StyD4I	CCNGG	4 cut(s)	245, 246, 260, 762
TaaI	ACNGT	2 cut(s)	398, 800
TaiI	ACGT	2 cut(s)	319, 929
TasI	AATT	8 cut(s)	28, 145, 172, 293, 432, 509, 519, 624
TfiI	GAWTC	1 cut(s)	529
Tru1I	TTAA	5 cut(s)	393, 431, 498, 512, 908
Tru9I	TTAA	5 cut(s)	393, 431, 498, 512, 908
TscAI	CASTG	1 cut(s)	920
TseFI	GTSAC	1 cut(s)	234
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	2 cut(s)	179, 483
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	1 cut(s)	920
Van91I	CCANNNNNTGG	1 cut(s)	769
XapI	RAATTY	1 cut(s)	519
XceI	RCATGY	1 cut(s)	865
XmaI	CCCGGG	1 cut(s)	246
XmiI	GTMKAC	2 cut(s)	5, 619
XspI	CTAG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.