Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000068.1

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Reverse (-)

42877 .. 43389

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000068.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgcaatatacattaccacttgaagaatatcaagcaaaggttcaagccagtaaagcgagggagttaactgaaagtttaatcaagctcaatgctgtgctgcaaagggatctacgtcgtgtgcaaaatcaacatcaggctgctggtatgatctggagagcttatcatgaacaacgtagaggaattgaaaacgaaatgcgtgccaataatatttctcaagaaatgatgttggagctggaggccactattagggagtcatttgatcaagcagtattcaagtcgaggcctgcaagcaaggcatcggttaaggcattggagaagtttgtgttggacgatggagatggaggttcgtgttcgatgtgtgtgatttgccaggaggagatgttgactggttttagagtcattcgcttgccatgctcccatatgttccatggagactgcattgtagaatggttaaaccgctggggtcatacgtgtcctgtgtgcaagttcaagttgccaagagaagaaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

170

Amino Acids

19.68

Weight (kDa)

6.95

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	457
AclWI	GGATC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	246
AflIII	ACRYGT	1 cut(s)	470
AgsI	TTSAA	5 cut(s)	23, 44, 185, 274, 490
AjnI	CCWGG	1 cut(s)	369
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	3 cut(s)	85, 158, 232
AluI	AGCT	3 cut(s)	85, 158, 232
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	237, 281
ApeKI	GCWGC	2 cut(s)	97, 137
BbvI	GCAGC	2 cut(s)	84, 124
BccI	CCATC	2 cut(s)	326, 332
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	1 cut(s)	371
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	426
BisI	GCNGC	2 cut(s)	98, 138
BlsI	GCNGC	2 cut(s)	99, 139
Bme1390I	CCNGG	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	305
BpmI	CTGGAG	2 cut(s)	172, 254
BpuEI	CTTGAG	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	2 cut(s)	48, 391
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	48, 391
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	2 cut(s)	84, 124
BseYI	CCCAGC	1 cut(s)	459
BshFI	GGCC	2 cut(s)	239, 283
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	426
BsnI	GGCC	2 cut(s)	239, 283
Bsp143I	GATC	3 cut(s)	106, 147, 259
Bsp19I	CCATGG	1 cut(s)	427
BspACI	CCGC	1 cut(s)	457
BspANI	GGCC	2 cut(s)	239, 283
BspHI	TCATGA	1 cut(s)	163
BspPI	GGATC	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	48, 391
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	3 cut(s)	106, 147, 259
BssT1I	CCWWGG	1 cut(s)	427
Bst2UI	CCWGG	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	471
BstC8I	GCNNGC	4 cut(s)	198, 285, 289, 407
BstDSI	CCRYGG	1 cut(s)	427
BstKTI	GATC	3 cut(s)	109, 150, 262
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	3 cut(s)	106, 147, 259
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 293, 411
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	84, 124
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	239, 283
BtgI	CCRYGG	1 cut(s)	427
Cac8I	GCNNGC	4 cut(s)	198, 285, 289, 407
CciI	TCATGA	1 cut(s)	163
CviAII	CATG	3 cut(s)	164, 411, 428
CviJI	RGCY	7 cut(s)	47, 85, 137, 158, 232, 239, 283
CviKI_1	RGCY	7 cut(s)	47, 85, 137, 158, 232, 239, 283
DpnI	GATC	3 cut(s)	108, 149, 261
DpnII	GATC	3 cut(s)	106, 147, 259
Eco130I	CCWWGG	1 cut(s)	427
Eco147I	AGGCCT	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	3 cut(s)	167, 414, 431
FaiI	YATR	8 cut(s)	9, 146, 165, 412, 420, 422, 429, 468
FatI	CATG	3 cut(s)	163, 410, 427
FauNDI	CATATG	1 cut(s)	420
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	98, 138
Fsp4HI	GCNGC	2 cut(s)	98, 138
GluI	GCNGC	2 cut(s)	98, 138
GsaI	CCCAGC	1 cut(s)	463
GsuI	CTGGAG	2 cut(s)	172, 254
HaeIII	GGCC	2 cut(s)	239, 283
Hin1II	CATG	3 cut(s)	167, 414, 431
HincII	GTYRAC	2 cut(s)	66, 384
HindII	GTYRAC	2 cut(s)	66, 384
HinfI	GANTC	2 cut(s)	251, 396
HpaI	GTTAAC	1 cut(s)	66
Hpy166II	GTNNAC	2 cut(s)	66, 384
Hpy188I	TCNGA	1 cut(s)	512
Hpy188III	TCNNGA	3 cut(s)	151, 164, 215
Hpy8I	GTNNAC	2 cut(s)	66, 384
Hpy99I	CGWCG	1 cut(s)	117
HpyCH4IV	ACGT	3 cut(s)	112, 172, 470
HpyCH4V	TGCA	6 cut(s)	4, 100, 121, 287, 438, 483
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 293, 411
HpySE526I	ACGT	3 cut(s)	112, 172, 470
Hsp92II	CATG	3 cut(s)	167, 414, 431
Ksp22I	TGATCA	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	106, 147, 259
LmnI	GCTCC	2 cut(s)	229, 419
Lsp1109I	GCAGC	2 cut(s)	84, 124
LweI	GCATC	1 cut(s)	305
MaeII	ACGT	3 cut(s)	112, 172, 470
MalI	GATC	3 cut(s)	108, 149, 261
MboI	GATC	3 cut(s)	106, 147, 259
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	1 cut(s)	180
MlyI	GAGTC	2 cut(s)	260, 405
MmeI	TCCRAC	2 cut(s)	207, 306
MnlI	CCTC	6 cut(s)	51, 170, 229, 273, 335, 367
MseI	TTAA	4 cut(s)	65, 77, 303, 452
MspA1I	CMGCKG	1 cut(s)	459
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	3 cut(s)	53, 293, 411
NcoI	CCATGG	1 cut(s)	427
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	3 cut(s)	106, 147, 259
NlaIII	CATG	3 cut(s)	167, 414, 431
PagI	TCATGA	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	99, 139
PleI	GAGTC	2 cut(s)	259, 404
PpsI	GAGTC	2 cut(s)	259, 404
Ppu21I	YACGTR	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	369
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	106
SaqAI	TTAA	4 cut(s)	65, 77, 303, 452
SatI	GCNGC	2 cut(s)	98, 138
Sau3AI	GATC	3 cut(s)	106, 147, 259
SchI	GAGTC	2 cut(s)	260, 405
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	8 cut(s)	42, 87, 115, 160, 175, 234, 346, 473
SfaNI	GCATC	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	1 cut(s)	180
SseBI	AGGCCT	1 cut(s)	283
SsiI	CCGC	1 cut(s)	457
SspI	AATATT	1 cut(s)	208
StuI	AGGCCT	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	427
TaiI	ACGT	3 cut(s)	115, 175, 473
TaqI	TCGA	2 cut(s)	278, 353
TasI	AATT	1 cut(s)	180
Tru1I	TTAA	4 cut(s)	65, 77, 303, 452
Tru9I	TTAA	4 cut(s)	65, 77, 303, 452
TseI	GCWGC	2 cut(s)	97, 137
TspDTI	ATGAA	1 cut(s)	180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.