Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Forward (+)

9590231 .. 9591752

Gene Structure 1522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G082700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCTTTCTGCTGATGATATTCATAAATTGGAGGAGTCTCGAGATAAGATATTGAGCCTTCGGGACAGTGGAGTGAGATATTGTACAGTCCTGCGCCTACTCTTAAATCTATTGGGACTATACACAGGGGATACCGACGATGGCACATTGATGGAAGAGGCTTTGAGAGAGTCATTAAATCAAGAAATGTTCAGACCAATGCCTGCAACCAGAGCATCAGTTGAGGCCTTGGATAAGTTTGTGTTTGATGGAGGGGTACTAAACGGTTCAAGCAGCGATCAACATTGTGTGATTTGCTTGGAAAGGATGTTGAGTGGGGATCAAGTCACTTGCTTGCCATGCTCTCATATGTTTCATGCCAACTGCATTGAACAATGGTTGAGGTATGGTCATATCTGTCCTCTGTGTAGGTTCAAGTTGCCAACTGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

145

Amino Acids

16.24

Weight (kDa)

5.11

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	327
AfaI	GTAC	2 cut(s)	85, 258
AgsI	TTSAA	3 cut(s)	270, 371, 415
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	327
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	285
BccI	CCATC	3 cut(s)	134, 145, 242
BciVI	GTATCC	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	42
BfuI	GTATCC	1 cut(s)	124
BisI	GCNGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	275
BmeT110I	CYCGRG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	285
BshFI	GGCC	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	39
BslFI	GGGAC	2 cut(s)	77, 129
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	2 cut(s)	77, 129
BsnI	GGCC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	39
Bsp1407I	TGTACA	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	277, 319
BspANI	GGCC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	327
BsrGI	TGTACA	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	2 cut(s)	277, 319
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	3 cut(s)	68, 88, 266
Bst6I	CTCTTC	1 cut(s)	150
BstAUI	TGTACA	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	204, 335
BstF5I	GGATG	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	2 cut(s)	280, 322
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	277, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 339
BstV1I	GCAGC	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	204, 335
CfoI	GCGC	1 cut(s)	96
Csp6I	GTAC	2 cut(s)	84, 257
CviAII	CATG	2 cut(s)	339, 356
CviJI	RGCY	3 cut(s)	57, 161, 227
CviKI_1	RGCY	3 cut(s)	57, 161, 227
CviQI	GTAC	2 cut(s)	84, 257
DpnI	GATC	2 cut(s)	279, 321
DpnII	GATC	2 cut(s)	277, 319
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	227
Eco88I	CYCGRG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	342, 359
FaiI	YATR	8 cut(s)	24, 121, 340, 348, 350, 357, 387, 393
FaqI	GGGAC	2 cut(s)	77, 129
FatI	CATG	2 cut(s)	338, 355
FauNDI	CATATG	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	274
FokI	GGATG	1 cut(s)	319
Fsp4HI	GCNGC	1 cut(s)	274
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	342, 359
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	3 cut(s)	35, 170, 428
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	5 cut(s)	39, 41, 62, 182, 432
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	3 cut(s)	68, 88, 266
HpyCH4V	TGCA	2 cut(s)	206, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 339
Hsp92II	CATG	2 cut(s)	342, 359
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	277, 319
LpnPI	CCDG	4 cut(s)	104, 111, 216, 223
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	2 cut(s)	279, 321
MboI	GATC	2 cut(s)	277, 319
MboII	GAAGA	1 cut(s)	167
MluCI	AATT	1 cut(s)	26
MlyI	GAGTC	2 cut(s)	44, 179
MnlI	CCTC	6 cut(s)	25, 151, 217, 245, 375, 411
MseI	TTAA	2 cut(s)	104, 176
MslI	CAYNNNNRTG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	212, 339
NdeI	CATATG	1 cut(s)	348
NdeII	GATC	2 cut(s)	277, 319
NlaIII	CATG	2 cut(s)	342, 359
NmuCI	GTSAC	1 cut(s)	325
PaeR7I	CTCGAG	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	1 cut(s)	275
PleI	GAGTC	2 cut(s)	43, 178
PpsI	GAGTC	2 cut(s)	43, 178
RsaI	GTAC	2 cut(s)	85, 258
RsaNI	GTAC	2 cut(s)	84, 257
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	104, 176
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	2 cut(s)	277, 319
SchI	GAGTC	2 cut(s)	44, 179
SetI	ASST	2 cut(s)	386, 413
SfaNI	GCATC	1 cut(s)	224
Sfr274I	CTCGAG	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	1 cut(s)	26
SseBI	AGGCCT	1 cut(s)	227
StuI	AGGCCT	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	3 cut(s)	68, 88, 266
TaqI	TCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	26
TatI	WGTACW	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	2 cut(s)	104, 176
Tru9I	TTAA	2 cut(s)	104, 176
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	1 cut(s)	273
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	11, 344
TspRI	CASTG	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.