Ring finger domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g28951 FvH4_5g00951 |
| malus_domestica | MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1 |
| prunus_persica | Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0200431 |
| rosa_laevigata | RLG00000003726 RLG00000034854 |
| rosa_multiflora | Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00256000 |
| rosa_rugosa | Rorug07G0060200 |
| rosa_samantha | Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700 |
| rosa_wichuraiana | Rw5G032940 Rw7G016270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 267, 496 |
| AclWI | GGATC | 1 cut(s) | 510 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 273 |
| AgsI | TTSAA | 5 cut(s) | 23, 79, 185, 301, 529 |
| AjnI | CCWGG | 1 cut(s) | 400 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 335, 367 |
| AluBI | AGCT | 3 cut(s) | 85, 158, 259 |
| AluI | AGCT | 3 cut(s) | 85, 158, 259 |
| Alw26I | GTCTC | 1 cut(s) | 465 |
| AlwI | GGATC | 1 cut(s) | 510 |
| AoxI | GGCC | 2 cut(s) | 264, 308 |
| ApeKI | GCWGC | 2 cut(s) | 97, 137 |
| BauI | CACGAG | 1 cut(s) | 114 |
| BbvI | GCAGC | 2 cut(s) | 84, 124 |
| BccI | CCATC | 2 cut(s) | 353, 359 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 179, 213 |
| BciT130I | CCWGG | 1 cut(s) | 402 |
| BciVI | GTATCC | 1 cut(s) | 522 |
| BclI | TGATCA | 1 cut(s) | 286 |
| BcoDI | GTCTC | 1 cut(s) | 465 |
| BfuI | GTATCC | 1 cut(s) | 522 |
| BisI | GCNGC | 3 cut(s) | 98, 138, 267 |
| BlsI | GCNGC | 3 cut(s) | 99, 139, 268 |
| Bme1390I | CCNGG | 1 cut(s) | 402 |
| BmrFI | CCNGG | 1 cut(s) | 402 |
| BmsI | GCATC | 1 cut(s) | 332 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 418, 450 |
| BpmI | CTGGAG | 3 cut(s) | 172, 198, 281 |
| BsaAI | YACGTR | 1 cut(s) | 510 |
| BsaJI | CCNNGG | 1 cut(s) | 466 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 396, 426 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 273 |
| Bse1I | ACTGG | 2 cut(s) | 48, 422 |
| BseBI | CCWGG | 1 cut(s) | 402 |
| BseDI | CCNNGG | 1 cut(s) | 466 |
| BseGI | GGATG | 1 cut(s) | 370 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 273 |
| BseNI | ACTGG | 2 cut(s) | 48, 422 |
| BseRI | GAGGAG | 1 cut(s) | 420 |
| BseXI | GCAGC | 2 cut(s) | 84, 124 |
| BseYI | CCCAGC | 1 cut(s) | 498 |
| BshFI | GGCC | 2 cut(s) | 266, 310 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 273 |
| BsmAI | GTCTC | 1 cut(s) | 465 |
| BsnI | GGCC | 2 cut(s) | 266, 310 |
| Bsp143I | GATC | 3 cut(s) | 147, 286, 502 |
| Bsp19I | CCATGG | 1 cut(s) | 466 |
| BspACI | CCGC | 2 cut(s) | 267, 496 |
| BspANI | GGCC | 2 cut(s) | 266, 310 |
| BspHI | TCATGA | 1 cut(s) | 163 |
| BspPI | GGATC | 1 cut(s) | 510 |
| BsrI | ACTGG | 2 cut(s) | 48, 422 |
| BssECI | CCNNGG | 1 cut(s) | 466 |
| BssMI | GATC | 3 cut(s) | 147, 286, 502 |
| BssSI | CACGAG | 1 cut(s) | 114 |
| BssT1I | CCWWGG | 1 cut(s) | 466 |
| Bst2BI | CACGAG | 1 cut(s) | 114 |
| Bst2UI | CCWGG | 1 cut(s) | 402 |
| BstBAI | YACGTR | 1 cut(s) | 510 |
| BstC8I | GCNNGC | 3 cut(s) | 198, 312, 316 |
| BstDSI | CCRYGG | 1 cut(s) | 466 |
| BstF5I | GGATG | 1 cut(s) | 370 |
| BstKTI | GATC | 3 cut(s) | 150, 289, 505 |
| BstMAI | GTCTC | 1 cut(s) | 465 |
| BstMBI | GATC | 3 cut(s) | 147, 286, 502 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 53, 320 |
| BstNI | CCWGG | 1 cut(s) | 402 |
| BstNSI | RCATGY | 1 cut(s) | 391 |
| BstSCI | CCNGG | 1 cut(s) | 400 |
| BstSNI | TACGTA | 1 cut(s) | 510 |
| BstV1I | GCAGC | 2 cut(s) | 84, 124 |
| BsuI | GTATCC | 1 cut(s) | 522 |
| BsuRI | GGCC | 2 cut(s) | 266, 310 |
| BtgI | CCRYGG | 1 cut(s) | 466 |
| BtsCI | GGATG | 1 cut(s) | 370 |
| Cac8I | GCNNGC | 3 cut(s) | 198, 312, 316 |
| CciI | TCATGA | 1 cut(s) | 163 |
| CviAII | CATG | 4 cut(s) | 164, 388, 442, 467 |
| CviJI | RGCY | 7 cut(s) | 47, 85, 137, 158, 259, 266, 310 |
| CviKI_1 | RGCY | 7 cut(s) | 47, 85, 137, 158, 259, 266, 310 |
| DpnI | GATC | 3 cut(s) | 149, 288, 504 |
| DpnII | GATC | 3 cut(s) | 147, 286, 502 |
| Eco105I | TACGTA | 1 cut(s) | 510 |
| Eco130I | CCWWGG | 1 cut(s) | 466 |
| Eco147I | AGGCCT | 1 cut(s) | 310 |
| EcoRII | CCWGG | 1 cut(s) | 400 |
| EcoT14I | CCWWGG | 1 cut(s) | 466 |
| ErhI | CCWWGG | 1 cut(s) | 466 |
| FaeI | CATG | 4 cut(s) | 167, 391, 445, 470 |
| FatI | CATG | 4 cut(s) | 163, 387, 441, 466 |
| FauNDI | CATATG | 1 cut(s) | 459 |
| FbaI | TGATCA | 1 cut(s) | 286 |
| Fnu4HI | GCNGC | 3 cut(s) | 98, 138, 267 |
| FokI | GGATG | 1 cut(s) | 377 |
| Fsp4HI | GCNGC | 3 cut(s) | 98, 138, 267 |
| GluI | GCNGC | 3 cut(s) | 98, 138, 267 |
| GsaI | CCCAGC | 1 cut(s) | 502 |
| GsuI | CTGGAG | 3 cut(s) | 172, 198, 281 |
| HaeIII | GGCC | 2 cut(s) | 266, 310 |
| Hin1II | CATG | 4 cut(s) | 167, 391, 445, 470 |
| HincII | GTYRAC | 2 cut(s) | 66, 415 |
| HindII | GTYRAC | 2 cut(s) | 66, 415 |
| HinfI | GANTC | 3 cut(s) | 223, 278, 427 |
| HpaI | GTTAAC | 1 cut(s) | 66 |
| Hpy166II | GTNNAC | 2 cut(s) | 66, 415 |
| Hpy188III | TCNNGA | 3 cut(s) | 151, 164, 215 |
| Hpy8I | GTNNAC | 2 cut(s) | 66, 415 |
| HpyCH4IV | ACGT | 2 cut(s) | 172, 509 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 100, 121, 314, 387, 477 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 53, 320 |
| HpySE526I | ACGT | 2 cut(s) | 172, 509 |
| Hsp92II | CATG | 4 cut(s) | 167, 391, 445, 470 |
| Ksp22I | TGATCA | 1 cut(s) | 286 |
| KspAI | GTTAAC | 1 cut(s) | 66 |
| Kzo9I | GATC | 3 cut(s) | 147, 286, 502 |
| LmnI | GCTCC | 2 cut(s) | 256, 450 |
| Lsp1109I | GCAGC | 2 cut(s) | 84, 124 |
| LweI | GCATC | 1 cut(s) | 332 |
| MaeII | ACGT | 2 cut(s) | 172, 509 |
| MaeIII | GTNAC | 1 cut(s) | 104 |
| MalI | GATC | 3 cut(s) | 149, 288, 504 |
| MboI | GATC | 3 cut(s) | 147, 286, 502 |
| MboII | GAAGA | 4 cut(s) | 35, 189, 258, 554 |
| MluCI | AATT | 2 cut(s) | 180, 553 |
| MlyI | GAGTC | 3 cut(s) | 232, 287, 436 |
| MmeI | TCCRAC | 2 cut(s) | 234, 333 |
| MnlI | CCTC | 6 cut(s) | 51, 256, 300, 325, 362, 398 |
| MseI | TTAA | 3 cut(s) | 65, 491, 556 |
| MspA1I | CMGCKG | 1 cut(s) | 498 |
| MspR9I | CCNGG | 1 cut(s) | 402 |
| MvaI | CCWGG | 1 cut(s) | 402 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 53, 320 |
| NcoI | CCATGG | 1 cut(s) | 466 |
| NdeI | CATATG | 1 cut(s) | 459 |
| NdeII | GATC | 3 cut(s) | 147, 286, 502 |
| NlaIII | CATG | 4 cut(s) | 167, 391, 445, 470 |
| NmuCI | GTSAC | 1 cut(s) | 104 |
| NspI | RCATGY | 1 cut(s) | 391 |
| PagI | TCATGA | 1 cut(s) | 163 |
| PceI | AGGCCT | 1 cut(s) | 310 |
| PkrI | GCNGC | 3 cut(s) | 99, 139, 268 |
| PleI | GAGTC | 3 cut(s) | 231, 286, 435 |
| PpsI | GAGTC | 3 cut(s) | 231, 286, 435 |
| Ppu21I | YACGTR | 1 cut(s) | 510 |
| Psp6I | CCWGG | 1 cut(s) | 400 |
| PspFI | CCCAGC | 1 cut(s) | 498 |
| PspGI | CCWGG | 1 cut(s) | 400 |
| SaqAI | TTAA | 3 cut(s) | 65, 491, 556 |
| SatI | GCNGC | 3 cut(s) | 98, 138, 267 |
| Sau3AI | GATC | 3 cut(s) | 147, 286, 502 |
| SchI | GAGTC | 3 cut(s) | 232, 287, 436 |
| ScrFI | CCNGG | 1 cut(s) | 402 |
| SetI | ASST | 8 cut(s) | 42, 87, 111, 160, 175, 261, 373, 512 |
| SfaNI | GCATC | 1 cut(s) | 332 |
| SnaBI | TACGTA | 1 cut(s) | 510 |
| Sse9I | AATT | 2 cut(s) | 180, 553 |
| SseBI | AGGCCT | 1 cut(s) | 310 |
| SsiI | CCGC | 2 cut(s) | 267, 496 |
| SspI | AATATT | 1 cut(s) | 208 |
| StuI | AGGCCT | 1 cut(s) | 310 |
| StyD4I | CCNGG | 1 cut(s) | 400 |
| StyI | CCWWGG | 1 cut(s) | 466 |
| TaiI | ACGT | 2 cut(s) | 175, 512 |
| TaqI | TCGA | 4 cut(s) | 43, 305, 374, 380 |
| TasI | AATT | 2 cut(s) | 180, 553 |
| TauI | GCSGC | 1 cut(s) | 269 |
| Tru1I | TTAA | 3 cut(s) | 65, 491, 556 |
| Tru9I | TTAA | 3 cut(s) | 65, 491, 556 |
| TseFI | GTSAC | 1 cut(s) | 104 |
| TseI | GCWGC | 2 cut(s) | 97, 137 |
| Tsp45I | GTSAC | 1 cut(s) | 104 |
| TspDTI | ATGAA | 1 cut(s) | 180 |
| XceI | RCATGY | 1 cut(s) | 391 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 464 |