Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Forward (+)

50440113 .. 50441054

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCCTATAGCGGAGGTTTCCCCGATGATCAAGAGCTTTTGAGTCCTCGTGTCTCGATCTCTTGGAATGTCATCGGAAGCTACAAGTCAGAGAATGTCAATTTCAAGAGGTCGATCGAATACCACAATTCAAGCCACTCATATCATGATGTATTTGCATCAATCGCATCTACCAATGATGATTATATGTCACCTCAATCCCGGGATATAATCTCCAGGATGATAGCTCATATAAACTTCCCCTTCGAATTAGATATGCTAAGCTGGAAACGTCGTTTCGGTCGCAATAACACGATAAAGCCATTAAACAGCGTTGACGATATAATAAGCCAAATACTTGAAGTTATTAACGGCATGGTTGTTTCGGGACGCAAGAAGGTGGACTTAATTGTCCAAGTTGATAAGCAATATACACTAGCACATGAACAATATCAAGCAAAGGTTCAGGCCAGTAAAGAGAGGGAATTAACTGAAATTCGCAGGAATCTCGATGCTGTGCTACTAAGGGAGCTGGCTCGTGTACAAAATCAACATCAGGCTGATATGATAAAAAGAGCTTATGCTGAACAATGTAGACGAATTGAAGACGAAATGCGTGCCAATAATATTTCTCAAGAAAGGATCATGGATAATGCAAGGTTCTTGGAGCAAGAGGCTATTAGGGAGTCATTTGATCAAGTAGTGAACGGGCCGAGGCCTGCAAGTAAGGCGTCGATCCAGACACTGGAGAAGTTTGTGCTGGAGGATAAAGACGGTGGTTCGAGTTCGATTTGTGTAATTTGCAGGGAGGAGTTGACTGCTTGTAAAGTCATTCGCATGCCATGCTCCCATATGTTCCATGATGACTGCATTGTAGAATGGTTAAACCACTGGGGTCATACGTGTCCTCTTTGCAAGTTCAAGTTGCCAAAAGAGAGAAGAAACATGGAAGTGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

313

Amino Acids

36.3

Weight (kDa)

6.8

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	257 - 299	2e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	258 - 299	3.5e-09	Ring finger domain
zf-RING_11	PF17123	258 - 284	2.3e-06	RING-like zinc finger
zf-C3HC4_2	PF13923	258 - 298	9.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	389
AccB7I	CCANNNNNTGG	1 cut(s)	724
AccI	GTMKAC	1 cut(s)	574
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	2 cut(s)	629, 709
AcsI	RAATTY	1 cut(s)	474
AcyI	GRCGYC	1 cut(s)	710
AfaI	GTAC	1 cut(s)	522
AfiI	CCNNNNNNNGG	1 cut(s)	724
AflIII	ACRYGT	1 cut(s)	881
AgsI	TTSAA	5 cut(s)	106, 132, 341, 584, 901
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	6 cut(s)	37, 81, 227, 264, 511, 557
AluI	AGCT	6 cut(s)	37, 81, 227, 264, 511, 557
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	2 cut(s)	629, 709
AlwNI	CAGNNNCTG	1 cut(s)	724
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	4 cut(s)	3, 447, 689, 695
ApoI	RAATTY	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	689
AsuC2I	CCSGG	2 cut(s)	202, 203
AsuHPI	GGTGA	1 cut(s)	183
AsuII	TTCGAA	1 cut(s)	246
AvaI	CYCGRG	1 cut(s)	201
BauI	CACGAG	2 cut(s)	48, 516
BbsI	GAAGAC	1 cut(s)	591
BceAI	ACGGC	1 cut(s)	367
BcgI	CGANNNNNNTGC	4 cut(s)	469, 503, 578, 612
BciT130I	CCWGG	1 cut(s)	217
BclI	TGATCA	2 cut(s)	28, 673
BcnI	CCSGG	2 cut(s)	202, 203
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	7
BlpI	GCTNAGC	1 cut(s)	260
Bme1390I	CCNGG	3 cut(s)	202, 203, 217
BmeT110I	CYCGRG	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	689
BmrFI	CCNGG	3 cut(s)	202, 203, 217
BmrI	ACTGGG	1 cut(s)	880
BmsI	GCATC	3 cut(s)	167, 176, 481
BmuI	ACTGGG	1 cut(s)	880
BpiI	GAAGAC	1 cut(s)	591
BpmI	CTGGAG	3 cut(s)	199, 746, 761
Bpu1102I	GCTNAGC	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	597
BpuMI	CCSGG	2 cut(s)	202, 203
BsaAI	YACGTR	1 cut(s)	882
BsaHI	GRCGYC	1 cut(s)	710
BsaJI	CCNNGG	2 cut(s)	201, 692
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse1I	ACTGG	3 cut(s)	450, 729, 875
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	2 cut(s)	201, 692
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseNI	ACTGG	3 cut(s)	450, 729, 875
BseRI	GAGGAG	1 cut(s)	803
Bsh1285I	CGRYCG	2 cut(s)	117, 283
BshFI	GGCC	4 cut(s)	5, 449, 691, 697
BsiEI	CGRYCG	2 cut(s)	117, 283
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	724
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	4 cut(s)	5, 449, 691, 697
BsoBI	CYCGRG	1 cut(s)	201
Bsp119I	TTCGAA	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	520
Bsp143I	GATC	6 cut(s)	28, 57, 114, 621, 673, 714
Bsp1720I	GCTNAGC	1 cut(s)	260
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	4 cut(s)	5, 449, 691, 697
BspHI	TCATGA	1 cut(s)	145
BspPI	GGATC	2 cut(s)	629, 709
BspT104I	TTCGAA	1 cut(s)	246
BsrGI	TGTACA	1 cut(s)	520
BsrI	ACTGG	3 cut(s)	450, 729, 875
BssECI	CCNNGG	2 cut(s)	201, 692
BssMI	GATC	6 cut(s)	28, 57, 114, 621, 673, 714
BssNI	GRCGYC	1 cut(s)	710
BssSI	CACGAG	2 cut(s)	48, 516
Bst2BI	CACGAG	2 cut(s)	48, 516
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	755
BstACI	GRCGYC	1 cut(s)	710
BstAPI	GCANNNNNTGC	1 cut(s)	822
BstAUI	TGTACA	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	882
BstBI	TTCGAA	1 cut(s)	246
BstC8I	GCNNGC	4 cut(s)	513, 597, 699, 818
BstDEI	CTNAG	2 cut(s)	260, 503
BstF5I	GGATG	1 cut(s)	225
BstKTI	GATC	6 cut(s)	31, 60, 117, 624, 676, 717
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	6 cut(s)	28, 57, 114, 621, 673, 714
BstMCI	CGRYCG	2 cut(s)	117, 283
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 707, 822
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	820
BstSCI	CCNGG	3 cut(s)	200, 201, 215
BstSFI	CTRYAG	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	591
BsuRI	GGCC	4 cut(s)	5, 449, 691, 697
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	722, 868
Cac8I	GCNNGC	4 cut(s)	513, 597, 699, 818
CaiI	CAGNNNCTG	1 cut(s)	724
CciI	TCATGA	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	689
Cfr9I	CCCGGG	1 cut(s)	201
CseI	GACGC	2 cut(s)	378, 699
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	8 cut(s)	146, 355, 422, 625, 817, 822, 839, 925
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	2 cut(s)	260, 503
DpnI	GATC	6 cut(s)	30, 59, 116, 623, 675, 716
DpnII	GATC	6 cut(s)	28, 57, 114, 621, 673, 714
DrdI	GACNNNNNNGTC	1 cut(s)	389
DseDI	GACNNNNNNGTC	1 cut(s)	389
Eco147I	AGGCCT	1 cut(s)	697
Eco88I	CYCGRG	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	215
FaeI	CATG	8 cut(s)	149, 358, 425, 628, 820, 825, 842, 928
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	8 cut(s)	145, 354, 421, 624, 816, 821, 838, 924
FauNDI	CATATG	1 cut(s)	831
FbaI	TGATCA	2 cut(s)	28, 673
FblI	GTMKAC	1 cut(s)	574
FokI	GGATG	1 cut(s)	232
FspBI	CTAG	1 cut(s)	416
GsuI	CTGGAG	3 cut(s)	199, 746, 761
HaeIII	GGCC	4 cut(s)	5, 449, 691, 697
HapII	CCGG	1 cut(s)	202
HgaI	GACGC	2 cut(s)	378, 699
Hin1I	GRCGYC	1 cut(s)	710
Hin1II	CATG	8 cut(s)	149, 358, 425, 628, 820, 825, 842, 928
HincII	GTYRAC	2 cut(s)	316, 795
HindII	GTYRAC	2 cut(s)	316, 795
HinfI	GANTC	3 cut(s)	43, 484, 665
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	6 cut(s)	316, 382, 521, 575, 685, 795
Hpy188I	TCNGA	2 cut(s)	77, 91
Hpy188III	TCNNGA	8 cut(s)	32, 55, 106, 146, 366, 488, 614, 718
Hpy8I	GTNNAC	6 cut(s)	316, 382, 521, 575, 685, 795
Hpy99I	CGWCG	2 cut(s)	276, 715
HpyAV	CCTTC	2 cut(s)	253, 370
HpyCH4III	ACNGT	1 cut(s)	755
HpyCH4IV	ACGT	2 cut(s)	271, 881
HpyCH4V	TGCA	6 cut(s)	158, 635, 701, 783, 849, 894
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 707, 822
HpyF3I	CTNAG	2 cut(s)	260, 503
HpySE526I	ACGT	2 cut(s)	271, 881
Hsp92I	GRCGYC	1 cut(s)	710
Hsp92II	CATG	8 cut(s)	149, 358, 425, 628, 820, 825, 842, 928
Ksp22I	TGATCA	2 cut(s)	28, 673
Kzo9I	GATC	6 cut(s)	28, 57, 114, 621, 673, 714
LmnI	GCTCC	3 cut(s)	508, 646, 830
LweI	GCATC	3 cut(s)	167, 176, 481
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	2 cut(s)	271, 881
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	6 cut(s)	30, 59, 116, 623, 675, 716
MboI	GATC	6 cut(s)	28, 57, 114, 621, 673, 714
MboII	GAAGA	2 cut(s)	596, 930
MluCI	AATT	8 cut(s)	100, 127, 248, 387, 464, 474, 579, 777
MlyI	GAGTC	2 cut(s)	52, 674
MseI	TTAA	5 cut(s)	305, 348, 386, 467, 863
MslI	CAYNNNNRTG	2 cut(s)	815, 929
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	3 cut(s)	202, 203, 217
MvaI	CCWGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	3 cut(s)	164, 707, 822
NciI	CCSGG	2 cut(s)	202, 203
NdeI	CATATG	1 cut(s)	831
NdeII	GATC	6 cut(s)	28, 57, 114, 621, 673, 714
NlaIII	CATG	8 cut(s)	149, 358, 425, 628, 820, 825, 842, 928
NmeAIII	GCCGAG	1 cut(s)	717
NmuCI	GTSAC	1 cut(s)	189
NspI	RCATGY	1 cut(s)	820
NspV	TTCGAA	1 cut(s)	246
PaeI	GCATGC	1 cut(s)	820
PagI	TCATGA	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	697
PfeI	GAWTC	1 cut(s)	484
PflMI	CCANNNNNTGG	1 cut(s)	724
PfoI	TCCNGGA	1 cut(s)	215
Ple19I	CGATCG	1 cut(s)	117
PleI	GAGTC	2 cut(s)	51, 673
PpsI	GAGTC	2 cut(s)	51, 673
Ppu21I	YACGTR	1 cut(s)	882
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	689
PstNI	CAGNNNCTG	1 cut(s)	724
PvuI	CGATCG	1 cut(s)	117
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
RseI	CAYNNNNRTG	2 cut(s)	815, 929
SaqAI	TTAA	5 cut(s)	305, 348, 386, 467, 863
Sau3AI	GATC	6 cut(s)	28, 57, 114, 621, 673, 714
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	2 cut(s)	52, 674
ScrFI	CCNGG	3 cut(s)	202, 203, 217
SfaNI	GCATC	3 cut(s)	167, 176, 481
SfcI	CTRYAG	1 cut(s)	7
SfuI	TTCGAA	1 cut(s)	246
SmaI	CCCGGG	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	815, 929
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
SphI	GCATGC	1 cut(s)	820
Sse9I	AATT	8 cut(s)	100, 127, 248, 387, 464, 474, 579, 777
SseBI	AGGCCT	1 cut(s)	697
SsiI	CCGC	1 cut(s)	12
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	1 cut(s)	416
StuI	AGGCCT	1 cut(s)	697
StyD4I	CCNGG	3 cut(s)	200, 201, 215
TaaI	ACNGT	1 cut(s)	755
TaiI	ACGT	2 cut(s)	274, 884
TaqI	TCGA	8 cut(s)	56, 113, 117, 246, 489, 713, 761, 767
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	8 cut(s)	100, 127, 248, 387, 464, 474, 579, 777
TatI	WGTACW	1 cut(s)	520
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	5 cut(s)	305, 348, 386, 467, 863
Tru9I	TTAA	5 cut(s)	305, 348, 386, 467, 863
TscAI	CASTG	2 cut(s)	729, 875
TseFI	GTSAC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	1 cut(s)	438
TspMI	CCCGGG	1 cut(s)	201
TspRI	CASTG	2 cut(s)	729, 875
Van91I	CCANNNNNTGG	1 cut(s)	724
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	1 cut(s)	820
XmaI	CCCGGG	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	574
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.