Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Reverse (-)

18209625 .. 18210575

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17940

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCCTATAGCGGAGGTTTCCCCGATGATCAAGAGCTTTTGAGTCCTCGTGTCTCGATCTCTTGGAATGTCATCGGAAGCTACAAGTCAGAGAATGTCAATTTCAAGAGGTCGATCGAATGCCACAATTCAAGCCACTCATATCATGATGTATTTGCATCAATCGCATCTACCAATGATGATTATATGTCACCTCAATCCCGGGATATAATCTCCAGGATGATAGCTCATATAAACTTCCCCTTCGAATTAGATATGCTGAGCTGGAAACGTCGTTTCGATCGCAATAACACGATAAAGCCACTAAACAGCGTTGACGATATAATAAGCCAAATACTTGAAGTTATTAACGGCATGGTTGTTTCGGGACGCAAGAAGGTGGACTTAATTGTCGAAGTTGATAAGCAATATACACTAGCACATGAAGAATATCAGGCAAAGGTTCAGGCGATTAAAGAGAGGGAATTAACTGAAATTCGCAGGAATCTCGATGCTGTGCTACTAAGGGAGCTGGCTCGTGTTCAAAATCAACGTCAGGCTGATATGATAAAAAGAGCTTATGCTGAACAATGTAGACGAATTGAAGACGAAATGCGTGCCAATAATATTTCTCAAGAAAGGATCATGGATAATGCAAGGTTCTTGGAGCAAGAGGCTATTAGGGAGTCATTTGATCAAGTAGTGAACAGGCCGAGACCTGCAAGTAAGGCGTCGATCCAGGCATTGGAGAAGTTTGTGTTGGAGGATAAAGACGGTGGCTCGAGTTCGATTTGTGTGATTTGCAGGGAGGAGTTGACTGCTTGTAAAGTCATTCGCATGCCATGCTCCCATATGTTCCATGATGACTGCATTGTAGAATGGTTAAACCACTGGGGTCATACGTGTCCTCTTTGCAAGTTCAATTTGCCAAAAGAGAAGAAACATGGAAGTGAAGAACTAAAACGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

316

Amino Acids

36.65

Weight (kDa)

6.39

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	257 - 299	2e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	258 - 299	3.6e-09	Ring finger domain
zf-RING_11	PF17123	258 - 284	2.3e-06	RING-like zinc finger
zf-C3HC4_2	PF13923	258 - 298	9.9e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	706
AccB7I	CCANNNNNTGG	1 cut(s)	724
AccI	GTMKAC	1 cut(s)	574
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	2 cut(s)	629, 709
AcsI	RAATTY	1 cut(s)	474
AcyI	GRCGYC	1 cut(s)	710
AfiI	CCNNNNNNNGG	1 cut(s)	724
AflIII	ACRYGT	1 cut(s)	881
AgsI	TTSAA	6 cut(s)	106, 132, 341, 524, 584, 901
AjnI	CCWGG	2 cut(s)	215, 717
AjuI	GAANNNNNNNTTGG	2 cut(s)	722, 754
AluBI	AGCT	6 cut(s)	37, 81, 227, 264, 511, 557
AluI	AGCT	6 cut(s)	37, 81, 227, 264, 511, 557
Alw26I	GTCTC	2 cut(s)	58, 688
AlwI	GGATC	2 cut(s)	629, 709
Ama87I	CYCGRG	2 cut(s)	201, 760
AoxI	GGCC	2 cut(s)	3, 689
ApoI	RAATTY	1 cut(s)	474
ArsI	GACNNNNNNTTYG	2 cut(s)	517, 549
AsuC2I	CCSGG	2 cut(s)	202, 203
AsuHPI	GGTGA	1 cut(s)	183
AsuII	TTCGAA	1 cut(s)	246
AvaI	CYCGRG	2 cut(s)	201, 760
BauI	CACGAG	2 cut(s)	48, 516
BbsI	GAAGAC	1 cut(s)	591
BceAI	ACGGC	1 cut(s)	367
BcgI	CGANNNNNNTGC	4 cut(s)	469, 503, 578, 612
BciT130I	CCWGG	2 cut(s)	217, 719
BclI	TGATCA	2 cut(s)	28, 673
BcnI	CCSGG	2 cut(s)	202, 203
BcoDI	GTCTC	2 cut(s)	58, 688
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	7
BfuAI	ACCTGC	1 cut(s)	706
BlpI	GCTNAGC	1 cut(s)	260
Bme1390I	CCNGG	4 cut(s)	202, 203, 217, 719
BmeT110I	CYCGRG	2 cut(s)	201, 760
BmrFI	CCNGG	4 cut(s)	202, 203, 217, 719
BmrI	ACTGGG	1 cut(s)	880
BmsI	GCATC	3 cut(s)	167, 176, 481
BmuI	ACTGGG	1 cut(s)	880
BpiI	GAAGAC	1 cut(s)	591
BpmI	CTGGAG	1 cut(s)	199
Bpu1102I	GCTNAGC	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	597
BpuMI	CCSGG	2 cut(s)	202, 203
BsaAI	YACGTR	1 cut(s)	882
BsaHI	GRCGYC	1 cut(s)	710
BsaI	GGTCTC	1 cut(s)	688
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse1I	ACTGG	1 cut(s)	875
BseBI	CCWGG	2 cut(s)	217, 719
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	1 cut(s)	875
BseRI	GAGGAG	1 cut(s)	803
Bsh1285I	CGRYCG	2 cut(s)	117, 283
BshFI	GGCC	2 cut(s)	5, 691
BsiEI	CGRYCG	2 cut(s)	117, 283
BsiHKCI	CYCGRG	2 cut(s)	201, 760
BsiSI	CCGG	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	724
BsmAI	GTCTC	2 cut(s)	58, 688
BsmFI	GGGAC	1 cut(s)	381
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	5, 691
Bso31I	GGTCTC	1 cut(s)	688
BsoBI	CYCGRG	2 cut(s)	201, 760
Bsp119I	TTCGAA	1 cut(s)	246
Bsp143I	GATC	7 cut(s)	28, 57, 114, 280, 621, 673, 714
Bsp1720I	GCTNAGC	1 cut(s)	260
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	2 cut(s)	5, 691
BspCNI	CTCAG	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	145
BspMI	ACCTGC	1 cut(s)	706
BspPI	GGATC	2 cut(s)	629, 709
BspT104I	TTCGAA	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	688
BsrI	ACTGG	1 cut(s)	875
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	7 cut(s)	28, 57, 114, 280, 621, 673, 714
BssNI	GRCGYC	1 cut(s)	710
BssSI	CACGAG	2 cut(s)	48, 516
Bst2BI	CACGAG	2 cut(s)	48, 516
Bst2UI	CCWGG	2 cut(s)	217, 719
Bst4CI	ACNGT	1 cut(s)	755
BstACI	GRCGYC	1 cut(s)	710
BstAPI	GCANNNNNTGC	1 cut(s)	822
BstBAI	YACGTR	1 cut(s)	882
BstBI	TTCGAA	1 cut(s)	246
BstC8I	GCNNGC	3 cut(s)	513, 597, 818
BstDEI	CTNAG	2 cut(s)	260, 503
BstF5I	GGATG	1 cut(s)	225
BstKTI	GATC	7 cut(s)	31, 60, 117, 283, 624, 676, 717
BstMAI	GTCTC	2 cut(s)	58, 688
BstMBI	GATC	7 cut(s)	28, 57, 114, 280, 621, 673, 714
BstMCI	CGRYCG	2 cut(s)	117, 283
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 707, 822
BstNI	CCWGG	2 cut(s)	217, 719
BstNSI	RCATGY	1 cut(s)	820
BstSCI	CCNGG	4 cut(s)	200, 201, 215, 717
BstSFI	CTRYAG	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	591
BsuRI	GGCC	2 cut(s)	5, 691
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	868
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	3 cut(s)	513, 597, 818
CciI	TCATGA	1 cut(s)	145
Cfr9I	CCCGGG	1 cut(s)	201
CseI	GACGC	2 cut(s)	378, 699
CviAII	CATG	8 cut(s)	146, 355, 422, 625, 817, 822, 839, 923
DdeI	CTNAG	2 cut(s)	260, 503
DpnI	GATC	7 cut(s)	30, 59, 116, 282, 623, 675, 716
DpnII	GATC	7 cut(s)	28, 57, 114, 280, 621, 673, 714
DrdI	GACNNNNNNGTC	1 cut(s)	389
DseDI	GACNNNNNNGTC	1 cut(s)	389
Eco31I	GGTCTC	1 cut(s)	688
Eco88I	CYCGRG	2 cut(s)	201, 760
EcoRII	CCWGG	2 cut(s)	215, 717
FaeI	CATG	8 cut(s)	149, 358, 425, 628, 820, 825, 842, 926
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	8 cut(s)	145, 354, 421, 624, 816, 821, 838, 922
FauNDI	CATATG	1 cut(s)	831
FbaI	TGATCA	2 cut(s)	28, 673
FblI	GTMKAC	1 cut(s)	574
FokI	GGATG	1 cut(s)	232
FspBI	CTAG	1 cut(s)	416
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	2 cut(s)	5, 691
HapII	CCGG	1 cut(s)	202
HgaI	GACGC	2 cut(s)	378, 699
Hin1I	GRCGYC	1 cut(s)	710
Hin1II	CATG	8 cut(s)	149, 358, 425, 628, 820, 825, 842, 926
HincII	GTYRAC	2 cut(s)	316, 795
HindII	GTYRAC	2 cut(s)	316, 795
HinfI	GANTC	3 cut(s)	43, 484, 665
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	5 cut(s)	316, 382, 575, 685, 795
Hpy188I	TCNGA	2 cut(s)	77, 91
Hpy188III	TCNNGA	7 cut(s)	32, 55, 106, 146, 366, 488, 614
Hpy8I	GTNNAC	5 cut(s)	316, 382, 575, 685, 795
Hpy99I	CGWCG	2 cut(s)	276, 715
HpyAV	CCTTC	2 cut(s)	253, 370
HpyCH4III	ACNGT	1 cut(s)	755
HpyCH4IV	ACGT	3 cut(s)	271, 532, 881
HpyCH4V	TGCA	6 cut(s)	158, 635, 701, 783, 849, 894
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 707, 822
HpyF3I	CTNAG	2 cut(s)	260, 503
HpySE526I	ACGT	3 cut(s)	271, 532, 881
Hsp92I	GRCGYC	1 cut(s)	710
Hsp92II	CATG	8 cut(s)	149, 358, 425, 628, 820, 825, 842, 926
Ksp22I	TGATCA	2 cut(s)	28, 673
Kzo9I	GATC	7 cut(s)	28, 57, 114, 280, 621, 673, 714
LmnI	GCTCC	3 cut(s)	508, 646, 830
LweI	GCATC	3 cut(s)	167, 176, 481
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	3 cut(s)	271, 532, 881
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	7 cut(s)	30, 59, 116, 282, 623, 675, 716
MboI	GATC	7 cut(s)	28, 57, 114, 280, 621, 673, 714
MboII	GAAGA	4 cut(s)	437, 596, 928, 944
MluCI	AATT	8 cut(s)	100, 127, 248, 387, 464, 474, 579, 901
MlyI	GAGTC	2 cut(s)	52, 674
MmeI	TCCRAC	1 cut(s)	720
MnlI	CCTC	9 cut(s)	8, 57, 102, 204, 453, 646, 736, 781, 897
MseI	TTAA	5 cut(s)	348, 386, 453, 467, 863
MslI	CAYNNNNRTG	2 cut(s)	815, 927
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	4 cut(s)	202, 203, 217, 719
Mva1269I	GAATGC	1 cut(s)	125
MvaI	CCWGG	2 cut(s)	217, 719
MwoI	GCNNNNNNNGC	3 cut(s)	164, 707, 822
NciI	CCSGG	2 cut(s)	202, 203
NdeI	CATATG	1 cut(s)	831
NdeII	GATC	7 cut(s)	28, 57, 114, 280, 621, 673, 714
NlaIII	CATG	8 cut(s)	149, 358, 425, 628, 820, 825, 842, 926
NmeAIII	GCCGAG	1 cut(s)	717
NmuCI	GTSAC	1 cut(s)	189
NspI	RCATGY	1 cut(s)	820
NspV	TTCGAA	1 cut(s)	246
PaeI	GCATGC	1 cut(s)	820
PaeR7I	CTCGAG	1 cut(s)	760
PagI	TCATGA	1 cut(s)	145
PctI	GAATGC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	484
PflMI	CCANNNNNTGG	1 cut(s)	724
PfoI	TCCNGGA	1 cut(s)	215
Ple19I	CGATCG	2 cut(s)	117, 283
PleI	GAGTC	2 cut(s)	51, 673
PpsI	GAGTC	2 cut(s)	51, 673
Ppu21I	YACGTR	1 cut(s)	882
Psp6I	CCWGG	2 cut(s)	215, 717
PspGI	CCWGG	2 cut(s)	215, 717
PspXI	VCTCGAGB	1 cut(s)	760
PvuI	CGATCG	2 cut(s)	117, 283
RseI	CAYNNNNRTG	2 cut(s)	815, 927
SaqAI	TTAA	5 cut(s)	348, 386, 453, 467, 863
Sau3AI	GATC	7 cut(s)	28, 57, 114, 280, 621, 673, 714
SchI	GAGTC	2 cut(s)	52, 674
ScrFI	CCNGG	4 cut(s)	202, 203, 217, 719
SfaNI	GCATC	3 cut(s)	167, 176, 481
SfcI	CTRYAG	1 cut(s)	7
Sfr274I	CTCGAG	1 cut(s)	760
SfuI	TTCGAA	1 cut(s)	246
SlaI	CTCGAG	1 cut(s)	760
SmaI	CCCGGG	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	815, 927
SmlI	CTYRAG	2 cut(s)	612, 760
SmoI	CTYRAG	2 cut(s)	612, 760
SphI	GCATGC	1 cut(s)	820
Sse9I	AATT	8 cut(s)	100, 127, 248, 387, 464, 474, 579, 901
SsiI	CCGC	1 cut(s)	12
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	4 cut(s)	200, 201, 215, 717
TaaI	ACNGT	1 cut(s)	755
TaiI	ACGT	3 cut(s)	274, 535, 884
TasI	AATT	8 cut(s)	100, 127, 248, 387, 464, 474, 579, 901
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	5 cut(s)	348, 386, 453, 467, 863
Tru9I	TTAA	5 cut(s)	348, 386, 453, 467, 863
TscAI	CASTG	1 cut(s)	875
TseFI	GTSAC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	1 cut(s)	438
TspMI	CCCGGG	1 cut(s)	201
TspRI	CASTG	1 cut(s)	875
Van91I	CCANNNNNTGG	1 cut(s)	724
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	1 cut(s)	820
XhoI	CTCGAG	1 cut(s)	760
XmaI	CCCGGG	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	574
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.