Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Reverse (-)

15199627 .. 15200571

Gene Structure 945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG188700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCTATAGCGGAGGTTTCCCCGATGATCAAGAGCTTTTGAGTCCTCGTGTCTCGATCTCTTGGAATGTCATCGGAAGCTACAAGTCAGAGAATGTCAATTTCAAGAGGTCGATCGAATACCACAATTCAAGCCACTCATATCATGATGTATTTGCATCAATCGCATCTACCAATGATGATTATATGTCACCTCAATCCCGGGATATAATCTCCAGGATGATAGCTCATATAAACTTCCCCTTCGAATTAGATATGCTAAGCTGGAAACGACGTCCTTTCAATAGCAATAATACGATAAAGCCACTAAACAGCGTTGACGATATAATAAGCCAAATACTTGAAGTTATTAACGGCATGGTTGTTTCGGGACGCAAGAAGGTGGACTTAATTGTCAAAGTTGATAAGCAATATACACTAGCACATGAAGAATATCAAGCAAAGGTTCAGGCCAGTAAAGAGAGGGAATTAACTGAAATTCGCAGGAATCTTGATGCTGTGCTACTAAGGGAGCTGGCTCGTGTACAAAATCAACATCAGGCTGATATGATAAAAAGAGCTTATGCTGAACAATGTAGACGAATTGAAGACGAAATGCGTGCCAATAATATTTCTCAAGAAAGGATCATGGATAATGCAAGGTTCTTGGAGCAAGAGGCTATTAGGGAGTCATTTGATCAAGTAGTGAACAGGCCGAGGCCTGCAAGTAAGGCGTCGATCCAGGCACTGGAGAAGTTTGTGTTGGAGGATAGAGACGGTGGTTCGAGTTCGATTTGTGTGATTTGCAGGGAGGAGTTGACTGCTTGTAAAGTCATTCGCATGCCATGCTCCCATATGTTCCATGATGACTGCATTGTAGAATGGTTAAACCACTGGGGTCGTACGTGTCCTCTTTGCAAGTTCAAGTTGCCAAAAGAGAGAAGAAACATGGAAGTGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

314

Amino Acids

36.5

Weight (kDa)

7.11

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	258 - 300	5.7e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	259 - 300	1.2e-09	Ring finger domain
zf-C3HC4	PF00097	259 - 299	2e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	259 - 299	4e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	259 - 285	2.3e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	392
AatII	GACGTC	1 cut(s)	277
AccB7I	CCANNNNNTGG	1 cut(s)	727
AccI	GTMKAC	1 cut(s)	577
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	2 cut(s)	632, 712
AcsI	RAATTY	1 cut(s)	477
AcyI	GRCGYC	2 cut(s)	274, 713
AfaI	GTAC	2 cut(s)	525, 883
AfiI	CCNNNNNNNGG	1 cut(s)	727
AflIII	ACRYGT	1 cut(s)	884
AgsI	TTSAA	6 cut(s)	106, 132, 283, 344, 587, 904
AjnI	CCWGG	2 cut(s)	215, 720
AjuI	GAANNNNNNNTTGG	2 cut(s)	725, 757
AluBI	AGCT	6 cut(s)	37, 81, 227, 264, 514, 560
AluI	AGCT	6 cut(s)	37, 81, 227, 264, 514, 560
Alw26I	GTCTC	2 cut(s)	58, 747
AlwI	GGATC	2 cut(s)	632, 712
AlwNI	CAGNNNCTG	1 cut(s)	727
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	4 cut(s)	3, 450, 692, 698
ApoI	RAATTY	1 cut(s)	477
AsuC2I	CCSGG	2 cut(s)	202, 203
AsuHPI	GGTGA	1 cut(s)	183
AsuII	TTCGAA	1 cut(s)	246
AvaI	CYCGRG	1 cut(s)	201
BauI	CACGAG	2 cut(s)	48, 519
BbsI	GAAGAC	1 cut(s)	594
BceAI	ACGGC	1 cut(s)	370
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BciT130I	CCWGG	2 cut(s)	217, 722
BclI	TGATCA	2 cut(s)	28, 676
BcnI	CCSGG	2 cut(s)	202, 203
BcoDI	GTCTC	2 cut(s)	58, 747
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	1 cut(s)	7
BlpI	GCTNAGC	1 cut(s)	260
Bme1390I	CCNGG	4 cut(s)	202, 203, 217, 722
BmeT110I	CYCGRG	1 cut(s)	201
BmrFI	CCNGG	4 cut(s)	202, 203, 217, 722
BmrI	ACTGGG	1 cut(s)	883
BmsI	GCATC	3 cut(s)	167, 176, 484
BmuI	ACTGGG	1 cut(s)	883
BpiI	GAAGAC	1 cut(s)	594
BpmI	CTGGAG	2 cut(s)	199, 749
Bpu1102I	GCTNAGC	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	600
BpuMI	CCSGG	2 cut(s)	202, 203
BsaAI	YACGTR	1 cut(s)	885
BsaHI	GRCGYC	2 cut(s)	274, 713
BsaJI	CCNNGG	2 cut(s)	201, 695
Bsc4I	CCNNNNNNNGG	1 cut(s)	727
Bse1I	ACTGG	3 cut(s)	453, 732, 878
BseBI	CCWGG	2 cut(s)	217, 722
BseDI	CCNNGG	2 cut(s)	201, 695
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	727
BseNI	ACTGG	3 cut(s)	453, 732, 878
BseRI	GAGGAG	1 cut(s)	806
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	4 cut(s)	5, 452, 694, 700
BsiEI	CGRYCG	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	202
BsiWI	CGTACG	1 cut(s)	881
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	1 cut(s)	727
BsmAI	GTCTC	2 cut(s)	58, 747
BsmBI	CGTCTC	1 cut(s)	747
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	4 cut(s)	5, 452, 694, 700
BsoBI	CYCGRG	1 cut(s)	201
Bsp119I	TTCGAA	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	523
Bsp143I	GATC	6 cut(s)	28, 57, 114, 624, 676, 717
Bsp1720I	GCTNAGC	1 cut(s)	260
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	4 cut(s)	5, 452, 694, 700
BspHI	TCATGA	1 cut(s)	145
BspPI	GGATC	2 cut(s)	632, 712
BspT104I	TTCGAA	1 cut(s)	246
BsrGI	TGTACA	1 cut(s)	523
BsrI	ACTGG	3 cut(s)	453, 732, 878
BssECI	CCNNGG	2 cut(s)	201, 695
BssMI	GATC	6 cut(s)	28, 57, 114, 624, 676, 717
BssNI	GRCGYC	2 cut(s)	274, 713
BssSI	CACGAG	2 cut(s)	48, 519
Bst2BI	CACGAG	2 cut(s)	48, 519
Bst2UI	CCWGG	2 cut(s)	217, 722
Bst4CI	ACNGT	1 cut(s)	758
BstACI	GRCGYC	2 cut(s)	274, 713
BstAPI	GCANNNNNTGC	1 cut(s)	825
BstAUI	TGTACA	1 cut(s)	523
BstBAI	YACGTR	1 cut(s)	885
BstBI	TTCGAA	1 cut(s)	246
BstC8I	GCNNGC	4 cut(s)	516, 600, 702, 821
BstDEI	CTNAG	2 cut(s)	260, 506
BstF5I	GGATG	1 cut(s)	225
BstKTI	GATC	6 cut(s)	31, 60, 117, 627, 679, 720
BstMAI	GTCTC	2 cut(s)	58, 747
BstMBI	GATC	6 cut(s)	28, 57, 114, 624, 676, 717
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 710, 825
BstNI	CCWGG	2 cut(s)	217, 722
BstNSI	RCATGY	1 cut(s)	823
BstSCI	CCNGG	4 cut(s)	200, 201, 215, 720
BstSFI	CTRYAG	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	594
BsuRI	GGCC	4 cut(s)	5, 452, 694, 700
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	725, 871
Cac8I	GCNNGC	4 cut(s)	516, 600, 702, 821
CaiI	CAGNNNCTG	1 cut(s)	727
CciI	TCATGA	1 cut(s)	145
Cfr9I	CCCGGG	1 cut(s)	201
CseI	GACGC	2 cut(s)	381, 702
Csp6I	GTAC	2 cut(s)	524, 882
CviAII	CATG	8 cut(s)	146, 358, 425, 628, 820, 825, 842, 928
CviQI	GTAC	2 cut(s)	524, 882
DdeI	CTNAG	2 cut(s)	260, 506
DpnI	GATC	6 cut(s)	30, 59, 116, 626, 678, 719
DpnII	GATC	6 cut(s)	28, 57, 114, 624, 676, 717
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
Eco147I	AGGCCT	1 cut(s)	700
Eco88I	CYCGRG	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	215, 720
Esp3I	CGTCTC	1 cut(s)	747
FaeI	CATG	8 cut(s)	149, 361, 428, 631, 823, 828, 845, 931
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	8 cut(s)	145, 357, 424, 627, 819, 824, 841, 927
FauNDI	CATATG	1 cut(s)	834
FbaI	TGATCA	2 cut(s)	28, 676
FblI	GTMKAC	1 cut(s)	577
FokI	GGATG	1 cut(s)	232
FspBI	CTAG	1 cut(s)	419
GsuI	CTGGAG	2 cut(s)	199, 749
HaeIII	GGCC	4 cut(s)	5, 452, 694, 700
HapII	CCGG	1 cut(s)	202
HgaI	GACGC	2 cut(s)	381, 702
Hin1I	GRCGYC	2 cut(s)	274, 713
Hin1II	CATG	8 cut(s)	149, 361, 428, 631, 823, 828, 845, 931
HincII	GTYRAC	2 cut(s)	319, 798
HindII	GTYRAC	2 cut(s)	319, 798
HinfI	GANTC	3 cut(s)	43, 487, 668
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	6 cut(s)	319, 385, 524, 578, 688, 798
Hpy188I	TCNGA	2 cut(s)	77, 91
Hpy188III	TCNNGA	7 cut(s)	32, 55, 106, 146, 369, 491, 617
Hpy8I	GTNNAC	6 cut(s)	319, 385, 524, 578, 688, 798
Hpy99I	CGWCG	2 cut(s)	276, 718
HpyAV	CCTTC	2 cut(s)	253, 373
HpyCH4III	ACNGT	1 cut(s)	758
HpyCH4IV	ACGT	2 cut(s)	274, 884
HpyCH4V	TGCA	6 cut(s)	158, 638, 704, 786, 852, 897
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 710, 825
HpyF3I	CTNAG	2 cut(s)	260, 506
HpySE526I	ACGT	2 cut(s)	274, 884
Hsp92I	GRCGYC	2 cut(s)	274, 713
Hsp92II	CATG	8 cut(s)	149, 361, 428, 631, 823, 828, 845, 931
Ksp22I	TGATCA	2 cut(s)	28, 676
Kzo9I	GATC	6 cut(s)	28, 57, 114, 624, 676, 717
LmnI	GCTCC	3 cut(s)	511, 649, 833
LweI	GCATC	3 cut(s)	167, 176, 484
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	2 cut(s)	274, 884
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	6 cut(s)	30, 59, 116, 626, 678, 719
MboI	GATC	6 cut(s)	28, 57, 114, 624, 676, 717
MboII	GAAGA	3 cut(s)	440, 599, 933
MluCI	AATT	7 cut(s)	100, 127, 248, 390, 467, 477, 582
MlyI	GAGTC	2 cut(s)	52, 677
MmeI	TCCRAC	1 cut(s)	723
MseI	TTAA	4 cut(s)	351, 389, 470, 866
MslI	CAYNNNNRTG	2 cut(s)	818, 932
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	4 cut(s)	202, 203, 217, 722
MvaI	CCWGG	2 cut(s)	217, 722
MwoI	GCNNNNNNNGC	3 cut(s)	164, 710, 825
NciI	CCSGG	2 cut(s)	202, 203
NdeI	CATATG	1 cut(s)	834
NdeII	GATC	6 cut(s)	28, 57, 114, 624, 676, 717
NlaIII	CATG	8 cut(s)	149, 361, 428, 631, 823, 828, 845, 931
NmeAIII	GCCGAG	1 cut(s)	720
NmuCI	GTSAC	1 cut(s)	189
NspI	RCATGY	1 cut(s)	823
NspV	TTCGAA	1 cut(s)	246
PaeI	GCATGC	1 cut(s)	823
PagI	TCATGA	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	700
PfeI	GAWTC	1 cut(s)	487
Pfl23II	CGTACG	1 cut(s)	881
PflMI	CCANNNNNTGG	1 cut(s)	727
PfoI	TCCNGGA	1 cut(s)	215
Ple19I	CGATCG	1 cut(s)	117
PleI	GAGTC	2 cut(s)	51, 676
PpsI	GAGTC	2 cut(s)	51, 676
Ppu21I	YACGTR	1 cut(s)	885
Psp6I	CCWGG	2 cut(s)	215, 720
PspGI	CCWGG	2 cut(s)	215, 720
PspLI	CGTACG	1 cut(s)	881
PstNI	CAGNNNCTG	1 cut(s)	727
PvuI	CGATCG	1 cut(s)	117
RsaI	GTAC	2 cut(s)	525, 883
RsaNI	GTAC	2 cut(s)	524, 882
RseI	CAYNNNNRTG	2 cut(s)	818, 932
SaqAI	TTAA	4 cut(s)	351, 389, 470, 866
Sau3AI	GATC	6 cut(s)	28, 57, 114, 624, 676, 717
SchI	GAGTC	2 cut(s)	52, 677
ScrFI	CCNGG	4 cut(s)	202, 203, 217, 722
SfaNI	GCATC	3 cut(s)	167, 176, 484
SfcI	CTRYAG	1 cut(s)	7
SfuI	TTCGAA	1 cut(s)	246
SmaI	CCCGGG	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	818, 932
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
SphI	GCATGC	1 cut(s)	823
Sse9I	AATT	7 cut(s)	100, 127, 248, 390, 467, 477, 582
SseBI	AGGCCT	1 cut(s)	700
SsiI	CCGC	1 cut(s)	12
SspI	AATATT	1 cut(s)	610
SspMI	CTAG	1 cut(s)	419
StuI	AGGCCT	1 cut(s)	700
StyD4I	CCNGG	4 cut(s)	200, 201, 215, 720
TaaI	ACNGT	1 cut(s)	758
TaiI	ACGT	2 cut(s)	277, 887
TaqI	TCGA	7 cut(s)	56, 113, 117, 246, 716, 764, 770
TasI	AATT	7 cut(s)	100, 127, 248, 390, 467, 477, 582
TatI	WGTACW	1 cut(s)	523
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	4 cut(s)	351, 389, 470, 866
Tru9I	TTAA	4 cut(s)	351, 389, 470, 866
TscAI	CASTG	2 cut(s)	732, 878
TseFI	GTSAC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	1 cut(s)	441
TspMI	CCCGGG	1 cut(s)	201
TspRI	CASTG	2 cut(s)	732, 878
Van91I	CCANNNNNTGG	1 cut(s)	727
XapI	RAATTY	1 cut(s)	477
XceI	RCATGY	1 cut(s)	823
XmaI	CCCGGG	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	577
XspI	CTAG	1 cut(s)	419
ZraI	GACGTC	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.