Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Reverse (-)

17210072 .. 17211167

Gene Structure 1096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG195900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTCGACTTCATACAACAACGACGCTAATTACAGCATATATGTAATGGCCTATAGCGGAGGTTTCCCCGATGATCAAGAGCTTTTGAGTCCTCGTGTCTCGATCTCTTGGAATGTCATCGGAAGCTACAAGTCAGAGAATGTCAATTTCAAGAGGTCGATCGAATACCACAATTCAAGCCACTCATATCATGATATATTTACATCAATCGCATCTACCAATGATGATTATATGTCACCTCAATCCCGGGATATAATCTCCAGGATGATAGCTCATATAAACTTCCCCTTCGAATTAGATATGCTGAGCTGGAAACGTCGTTTCGATCGCAATAACACGATAAAGCCACTAAACAGCGTTGACGATATAATAAGCCAAATACTTGAAGTTATTAACGGCATGGTTGTTTCGGGACGCAAGAAGGTGGACTTAATTGTCGAAGTTGATAAGCAATATACACTAGCACATGAAGAATATCAAGCAAAGGTTCAGGCGATTAAAGAGAGGGAATTAACTGAAATTCGCAGGAATCTCGATGCTGTGCTAGTAAGGGAGCTGACTCGTGTACAAAATCAACATCAGGCTGATATGATAAAAAGAGCTTATGCTGAACAATGTAGACGAATTGAAGACGAAATGCGTGCCAATAATATTTCTCAAGAAAGGATCATGGATAATGCAAGGTTCTTGGAGCAAGAGGCTATTAGGGAGTCATTTGATCAAGCAGTGAACAGGCCGAGGCCTGCAAGTAAGGCGTCGATCCAGGCATTGGAGAAGTTTGTGTTGGAGGATAAAGACGGTGGCTCGAGTTCGATTTGTGTGATTTGCAGGGAGGAGTTGACTGCTTGTAAAGTCATTCGCATGCCATGCTCCCATATGTTCCATGATGACTGCATTGTAGAATGGTTAAACCACTGGGATCATACGTGTCCTCTTTGCAAGTTCAAGTTGCCAAAAGAGAGAAGAAACATGGAAGTGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

328

Amino Acids

38.27

Weight (kDa)

6.1

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	272 - 314	1.3e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	273 - 314	5.6e-09	Ring finger domain
zf-RING_11	PF17123	273 - 299	2.4e-06	RING-like zinc finger
zf-C3HC4_2	PF13923	273 - 313	1e-05	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
AccB7I	CCANNNNNTGG	1 cut(s)	769
AccI	GTMKAC	2 cut(s)	5, 619
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	3 cut(s)	674, 754, 927
AcsI	RAATTY	1 cut(s)	519
AcyI	GRCGYC	1 cut(s)	755
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	1 cut(s)	769
AflIII	ACRYGT	1 cut(s)	926
AgsI	TTSAA	5 cut(s)	151, 177, 386, 629, 946
AjnI	CCWGG	2 cut(s)	260, 762
AjuI	GAANNNNNNNTTGG	2 cut(s)	767, 799
AluBI	AGCT	6 cut(s)	82, 126, 272, 309, 556, 602
AluI	AGCT	6 cut(s)	82, 126, 272, 309, 556, 602
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	3 cut(s)	674, 754, 927
Ama87I	CYCGRG	2 cut(s)	246, 805
AoxI	GGCC	3 cut(s)	48, 734, 740
ApoI	RAATTY	1 cut(s)	519
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	1 cut(s)	228
AsuII	TTCGAA	1 cut(s)	291
AvaI	CYCGRG	2 cut(s)	246, 805
BauI	CACGAG	2 cut(s)	93, 561
BbsI	GAAGAC	1 cut(s)	636
BceAI	ACGGC	1 cut(s)	412
BcgI	CGANNNNNNTGC	4 cut(s)	514, 548, 623, 657
BciT130I	CCWGG	2 cut(s)	262, 764
BclI	TGATCA	2 cut(s)	73, 718
BcnI	CCSGG	2 cut(s)	247, 248
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	2 cut(s)	461, 545
BfmI	CTRYAG	1 cut(s)	52
BlpI	GCTNAGC	1 cut(s)	305
Bme1390I	CCNGG	4 cut(s)	247, 248, 262, 764
BmeT110I	CYCGRG	2 cut(s)	246, 805
BmrFI	CCNGG	4 cut(s)	247, 248, 262, 764
BmrI	ACTGGG	1 cut(s)	925
BmsI	GCATC	2 cut(s)	221, 526
BmuI	ACTGGG	1 cut(s)	925
BpiI	GAAGAC	1 cut(s)	636
BpmI	CTGGAG	1 cut(s)	244
Bpu1102I	GCTNAGC	1 cut(s)	305
Bpu14I	TTCGAA	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	642
BpuMI	CCSGG	2 cut(s)	247, 248
BsaAI	YACGTR	1 cut(s)	927
BsaHI	GRCGYC	1 cut(s)	755
BsaJI	CCNNGG	2 cut(s)	246, 737
Bsc4I	CCNNNNNNNGG	1 cut(s)	769
Bse1I	ACTGG	1 cut(s)	920
BseBI	CCWGG	2 cut(s)	262, 764
BseDI	CCNNGG	2 cut(s)	246, 737
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	769
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	920
BseRI	GAGGAG	1 cut(s)	848
Bsh1285I	CGRYCG	2 cut(s)	162, 328
BshFI	GGCC	3 cut(s)	50, 736, 742
BsiEI	CGRYCG	2 cut(s)	162, 328
BsiHKCI	CYCGRG	2 cut(s)	246, 805
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	769
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	3 cut(s)	50, 736, 742
BsoBI	CYCGRG	2 cut(s)	246, 805
Bsp119I	TTCGAA	1 cut(s)	291
Bsp1407I	TGTACA	1 cut(s)	565
Bsp143I	GATC	8 cut(s)	73, 102, 159, 325, 666, 718, 759, 919
Bsp1720I	GCTNAGC	1 cut(s)	305
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	3 cut(s)	50, 736, 742
BspCNI	CTCAG	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	190
BspPI	GGATC	3 cut(s)	674, 754, 927
BspT104I	TTCGAA	1 cut(s)	291
BsrGI	TGTACA	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	920
BssECI	CCNNGG	2 cut(s)	246, 737
BssMI	GATC	8 cut(s)	73, 102, 159, 325, 666, 718, 759, 919
BssNI	GRCGYC	1 cut(s)	755
BssSI	CACGAG	2 cut(s)	93, 561
Bst2BI	CACGAG	2 cut(s)	93, 561
Bst2UI	CCWGG	2 cut(s)	262, 764
Bst4CI	ACNGT	1 cut(s)	800
BstACI	GRCGYC	1 cut(s)	755
BstAPI	GCANNNNNTGC	1 cut(s)	867
BstAUI	TGTACA	1 cut(s)	565
BstBAI	YACGTR	1 cut(s)	927
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	642, 744, 863
BstDEI	CTNAG	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	270
BstKTI	GATC	8 cut(s)	76, 105, 162, 328, 669, 721, 762, 922
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	8 cut(s)	73, 102, 159, 325, 666, 718, 759, 919
BstMCI	CGRYCG	2 cut(s)	162, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	752, 867
BstNI	CCWGG	2 cut(s)	262, 764
BstNSI	RCATGY	1 cut(s)	865
BstSCI	CCNGG	4 cut(s)	245, 246, 260, 762
BstSFI	CTRYAG	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	636
BsuRI	GGCC	3 cut(s)	50, 736, 742
BtsCI	GGATG	1 cut(s)	270
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	2 cut(s)	732, 913
Cac8I	GCNNGC	3 cut(s)	642, 744, 863
CciI	TCATGA	1 cut(s)	190
Cfr9I	CCCGGG	1 cut(s)	246
CseI	GACGC	3 cut(s)	32, 423, 744
Csp6I	GTAC	1 cut(s)	566
CviAII	CATG	8 cut(s)	191, 400, 467, 670, 862, 867, 884, 970
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	8 cut(s)	75, 104, 161, 327, 668, 720, 761, 921
DpnII	GATC	8 cut(s)	73, 102, 159, 325, 666, 718, 759, 919
DrdI	GACNNNNNNGTC	1 cut(s)	434
DseDI	GACNNNNNNGTC	1 cut(s)	434
Eco147I	AGGCCT	1 cut(s)	742
Eco88I	CYCGRG	2 cut(s)	246, 805
EcoRII	CCWGG	2 cut(s)	260, 762
FaeI	CATG	8 cut(s)	194, 403, 470, 673, 865, 870, 887, 973
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	8 cut(s)	190, 399, 466, 669, 861, 866, 883, 969
FauNDI	CATATG	1 cut(s)	876
FbaI	TGATCA	2 cut(s)	73, 718
FblI	GTMKAC	2 cut(s)	5, 619
FokI	GGATG	1 cut(s)	277
FspBI	CTAG	2 cut(s)	461, 545
GsuI	CTGGAG	1 cut(s)	244
HaeIII	GGCC	3 cut(s)	50, 736, 742
HapII	CCGG	1 cut(s)	247
HgaI	GACGC	3 cut(s)	32, 423, 744
Hin1I	GRCGYC	1 cut(s)	755
Hin1II	CATG	8 cut(s)	194, 403, 470, 673, 865, 870, 887, 973
HincII	GTYRAC	3 cut(s)	6, 361, 840
HindII	GTYRAC	3 cut(s)	6, 361, 840
HinfI	GANTC	4 cut(s)	88, 529, 559, 710
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	1 cut(s)	228
Hpy166II	GTNNAC	7 cut(s)	6, 361, 427, 566, 620, 730, 840
Hpy188I	TCNGA	2 cut(s)	122, 136
Hpy188III	TCNNGA	7 cut(s)	77, 100, 151, 191, 411, 533, 659
Hpy8I	GTNNAC	7 cut(s)	6, 361, 427, 566, 620, 730, 840
Hpy99I	CGWCG	3 cut(s)	26, 321, 760
HpyAV	CCTTC	2 cut(s)	298, 415
HpyCH4III	ACNGT	1 cut(s)	800
HpyCH4IV	ACGT	2 cut(s)	316, 926
HpyCH4V	TGCA	5 cut(s)	680, 746, 828, 894, 939
HpyF10VI	GCNNNNNNNGC	2 cut(s)	752, 867
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	2 cut(s)	316, 926
Hsp92I	GRCGYC	1 cut(s)	755
Hsp92II	CATG	8 cut(s)	194, 403, 470, 673, 865, 870, 887, 973
Ksp22I	TGATCA	2 cut(s)	73, 718
Kzo9I	GATC	8 cut(s)	73, 102, 159, 325, 666, 718, 759, 919
LmnI	GCTCC	3 cut(s)	553, 691, 875
LweI	GCATC	2 cut(s)	221, 526
MaeI	CTAG	2 cut(s)	461, 545
MaeII	ACGT	2 cut(s)	316, 926
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	8 cut(s)	75, 104, 161, 327, 668, 720, 761, 921
MboI	GATC	8 cut(s)	73, 102, 159, 325, 666, 718, 759, 919
MboII	GAAGA	3 cut(s)	482, 641, 975
MluCI	AATT	8 cut(s)	28, 145, 172, 293, 432, 509, 519, 624
MlyI	GAGTC	3 cut(s)	97, 553, 719
MmeI	TCCRAC	1 cut(s)	765
MseI	TTAA	5 cut(s)	393, 431, 498, 512, 908
MslI	CAYNNNNRTG	2 cut(s)	860, 974
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	4 cut(s)	247, 248, 262, 764
MvaI	CCWGG	2 cut(s)	262, 764
MwoI	GCNNNNNNNGC	2 cut(s)	752, 867
NciI	CCSGG	2 cut(s)	247, 248
NdeI	CATATG	1 cut(s)	876
NdeII	GATC	8 cut(s)	73, 102, 159, 325, 666, 718, 759, 919
NlaIII	CATG	8 cut(s)	194, 403, 470, 673, 865, 870, 887, 973
NmeAIII	GCCGAG	1 cut(s)	762
NmuCI	GTSAC	1 cut(s)	234
NspI	RCATGY	1 cut(s)	865
NspV	TTCGAA	1 cut(s)	291
PaeI	GCATGC	1 cut(s)	865
PaeR7I	CTCGAG	1 cut(s)	805
PagI	TCATGA	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	742
PfeI	GAWTC	1 cut(s)	529
PflMI	CCANNNNNTGG	1 cut(s)	769
PfoI	TCCNGGA	1 cut(s)	260
Ple19I	CGATCG	2 cut(s)	162, 328
PleI	GAGTC	3 cut(s)	96, 553, 718
PpsI	GAGTC	3 cut(s)	96, 553, 718
Ppu21I	YACGTR	1 cut(s)	927
Psp6I	CCWGG	2 cut(s)	260, 762
PspGI	CCWGG	2 cut(s)	260, 762
PspXI	VCTCGAGB	1 cut(s)	805
PvuI	CGATCG	2 cut(s)	162, 328
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
RseI	CAYNNNNRTG	2 cut(s)	860, 974
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	5 cut(s)	393, 431, 498, 512, 908
Sau3AI	GATC	8 cut(s)	73, 102, 159, 325, 666, 718, 759, 919
SchI	GAGTC	3 cut(s)	97, 553, 719
ScrFI	CCNGG	4 cut(s)	247, 248, 262, 764
SfaNI	GCATC	2 cut(s)	221, 526
SfcI	CTRYAG	1 cut(s)	52
Sfr274I	CTCGAG	1 cut(s)	805
SfuI	TTCGAA	1 cut(s)	291
SlaI	CTCGAG	1 cut(s)	805
SmaI	CCCGGG	1 cut(s)	248
SmiMI	CAYNNNNRTG	2 cut(s)	860, 974
SmlI	CTYRAG	2 cut(s)	657, 805
SmoI	CTYRAG	2 cut(s)	657, 805
SphI	GCATGC	1 cut(s)	865
Sse9I	AATT	8 cut(s)	28, 145, 172, 293, 432, 509, 519, 624
SseBI	AGGCCT	1 cut(s)	742
SsiI	CCGC	1 cut(s)	57
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	2 cut(s)	461, 545
StuI	AGGCCT	1 cut(s)	742
StyD4I	CCNGG	4 cut(s)	245, 246, 260, 762
TaaI	ACNGT	1 cut(s)	800
TaiI	ACGT	2 cut(s)	319, 929
TasI	AATT	8 cut(s)	28, 145, 172, 293, 432, 509, 519, 624
TatI	WGTACW	1 cut(s)	565
TfiI	GAWTC	1 cut(s)	529
Tru1I	TTAA	5 cut(s)	393, 431, 498, 512, 908
Tru9I	TTAA	5 cut(s)	393, 431, 498, 512, 908
TscAI	CASTG	2 cut(s)	732, 920
TseFI	GTSAC	1 cut(s)	234
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	483
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	2 cut(s)	732, 920
Van91I	CCANNNNNTGG	1 cut(s)	769
XapI	RAATTY	1 cut(s)	519
XceI	RCATGY	1 cut(s)	865
XhoI	CTCGAG	1 cut(s)	805
XmaI	CCCGGG	1 cut(s)	246
XmiI	GTMKAC	2 cut(s)	5, 619
XspI	CTAG	2 cut(s)	461, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.