Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Forward (+)

563178 .. 565191

Gene Structure 2014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g00951.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTCGACCTCCTACAACAACGATGGTAATTATAGCGTATATGTGACGGCCTATAGCAGAGGTTTGCTCGACAACAAATCGCTTTCGAGTCCTCGTGTCTTGATTGCTTGGAGAGTCGCTGAAAGCTACAAGTCGGAGAATCCCAGCATCAAGAAGTCGATCGTATGCCACAATTCAAACCACCCATGTAAGGCTGTATTTGCGTCACCTGAATTGCGGGATATGATCTCCGGGATGGTAGCCGGCATAAACCTTCCGTTTGAATTAGATAGGCTTATATGGAAACCTTTGGCACATGCCGCCAACAACACAGTACGGCAACTCCACAACGCCGATGATATGATAAGCCAAATACTTGAAGTCATTAACGGCATGGTTGTCTCAGGACGCAAGATAGTGGACTTAACTGTCGAAGTTGAAAAGGAACATGTAGTACCACATGAAGAATATGAAGCAAAGTTCAAGGCCGGAAAAGAGAGAGAGTTAGCTGAATGTATTGCAGATGTCGATACTAAGCTACGAATGGCGATGGCTAATACAGAAAATCGACAGATGGCTGGCATGATACGTAGAATTTGTCAGGAAAAGTATACAAATATTGAAAAAGAAATGCGTGCCTATAATGTTTCTGAAGAAAGGGTCATGGATATTGTAAGATCCTTGGATCCGGAGTCTGAGGCTATGAGGCAGTCATTTGATCAAGCTGCAGAGAACAAGCCGAGGCCGGCAAGCAAGGCCTCGATCGAGGCATTGGAGAAGTTCATATTGAAGTATGGAGATGTGATGATGTGTGTGATTTGCAAGGAGGAGATGACTGCTTGTAAAGTCATTCGCATGCCGTGCTCTCATGAGTTTCATGAAGACTGCATTGTACGATGGTTAAACGGTTACGATCATAGGTGCCCTCTCTGCAAATTCAAGTTGCCAAAGAGAAAGAAGAATCATGATGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

319

Amino Acids

36.41

Weight (kDa)

7.12

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	263 - 305	1.3e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	263 - 305	9.8e-09	Ring finger domain
zf-C3HC4_2	PF13923	263 - 304	3.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	264 - 304	4.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	264 - 290	9e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	900
AccI	GTMKAC	2 cut(s)	5, 590
AccIII	TCCGGA	1 cut(s)	667
AciI	CCGC	2 cut(s)	217, 300
AclWI	GGATC	3 cut(s)	651, 659, 672
AcsI	RAATTY	2 cut(s)	573, 914
AcuI	CTGAAG	1 cut(s)	651
AfaI	GTAC	3 cut(s)	315, 435, 873
AfiI	CCNNNNNNNGG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	8 cut(s)	177, 263, 359, 419, 463, 602, 769, 919
AluBI	AGCT	4 cut(s)	126, 488, 517, 704
AluI	AGCT	4 cut(s)	126, 488, 517, 704
Alw21I	GWGCWC	1 cut(s)	845
Alw26I	GTCTC	1 cut(s)	385
AlwI	GGATC	3 cut(s)	651, 659, 672
Aor13HI	TCCGGA	1 cut(s)	667
AoxI	GGCC	4 cut(s)	48, 465, 722, 735
ApeKI	GCWGC	1 cut(s)	704
ApoI	RAATTY	2 cut(s)	573, 914
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	905
BamHI	GGATCC	1 cut(s)	664
BanI	GGYRCC	1 cut(s)	900
BauI	CACGAG	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	867
Bbv12I	GWGCWC	1 cut(s)	845
BbvI	GCAGC	1 cut(s)	691
BccI	CCATC	5 cut(s)	17, 229, 523, 547, 870
BceAI	ACGGC	4 cut(s)	63, 332, 385, 823
BclI	TGATCA	1 cut(s)	697
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	385
BfmI	CTRYAG	2 cut(s)	52, 705
BisI	GCNGC	2 cut(s)	300, 705
BlsI	GCNGC	2 cut(s)	301, 706
Bme1390I	CCNGG	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	666, 902
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	867
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BpuMI	CCSGG	1 cut(s)	232
BsaAI	YACGTR	1 cut(s)	569
BsaJI	CCNNGG	2 cut(s)	660, 719
BsaWI	WCCGGW	1 cut(s)	667
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse118I	RCCGGY	2 cut(s)	242, 724
BseAI	TCCGGA	1 cut(s)	667
BseDI	CCNNGG	2 cut(s)	660, 719
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	396, 666
BseRI	GAGGAG	1 cut(s)	821
BseSI	GKGCMC	1 cut(s)	905
BseXI	GCAGC	1 cut(s)	691
BseYI	CCCAGC	1 cut(s)	143
Bsh1285I	CGRYCG	2 cut(s)	162, 744
BshFI	GGCC	4 cut(s)	50, 467, 724, 737
BshNI	GGYRCC	1 cut(s)	900
BsiEI	CGRYCG	2 cut(s)	162, 744
BsiHKAI	GWGCWC	1 cut(s)	845
BsiSI	CCGG	5 cut(s)	231, 243, 468, 668, 725
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	385
BsnI	GGCC	4 cut(s)	50, 467, 724, 737
Bsp1286I	GDGCHC	2 cut(s)	845, 905
Bsp13I	TCCGGA	1 cut(s)	667
Bsp143I	GATC	7 cut(s)	159, 225, 656, 664, 697, 741, 892
BspACI	CCGC	2 cut(s)	217, 300
BspANI	GGCC	4 cut(s)	50, 467, 724, 737
BspCNI	CTCAG	2 cut(s)	395, 667
BspEI	TCCGGA	1 cut(s)	667
BspHI	TCATGA	3 cut(s)	847, 856, 943
BspLI	GGNNCC	2 cut(s)	666, 902
BspMAI	CTGCAG	1 cut(s)	709
BspPI	GGATC	3 cut(s)	651, 659, 672
BspT107I	GGYRCC	1 cut(s)	900
BsrFI	RCCGGY	2 cut(s)	242, 724
BssAI	RCCGGY	2 cut(s)	242, 724
BssECI	CCNNGG	2 cut(s)	660, 719
BssMI	GATC	7 cut(s)	159, 225, 656, 664, 697, 741, 892
BssNAI	GTATAC	1 cut(s)	591
BssSI	CACGAG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	660
Bst1107I	GTATAC	1 cut(s)	591
Bst2BI	CACGAG	1 cut(s)	93
Bst4CI	ACNGT	3 cut(s)	313, 409, 887
BstAPI	GCANNNNNTGC	1 cut(s)	840
BstBAI	YACGTR	1 cut(s)	569
BstC8I	GCNNGC	6 cut(s)	244, 559, 615, 726, 730, 836
BstDEI	CTNAG	3 cut(s)	382, 513, 675
BstF5I	GGATG	1 cut(s)	240
BstKTI	GATC	7 cut(s)	162, 228, 659, 667, 700, 744, 895
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	7 cut(s)	159, 225, 656, 664, 697, 741, 892
BstMCI	CGRYCG	2 cut(s)	162, 744
BstMWI	GCNNNNNNNGC	5 cut(s)	200, 299, 734, 840, 909
BstNSI	RCATGY	3 cut(s)	299, 431, 838
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	2 cut(s)	52, 705
BstSLI	GKGCMC	1 cut(s)	905
BstSNI	TACGTA	1 cut(s)	569
BstV1I	GCAGC	1 cut(s)	691
BstV2I	GAAGAC	1 cut(s)	867
BstX2I	RGATCY	2 cut(s)	656, 664
BstYI	RGATCY	2 cut(s)	656, 664
BstZ17I	GTATAC	1 cut(s)	591
BsuRI	GGCC	4 cut(s)	50, 467, 724, 737
BtgZI	GCGATG	1 cut(s)	542
BtsCI	GGATG	1 cut(s)	240
Cac8I	GCNNGC	6 cut(s)	244, 559, 615, 726, 730, 836
CciI	TCATGA	3 cut(s)	847, 856, 943
Cfr10I	RCCGGY	2 cut(s)	242, 724
CseI	GACGC	2 cut(s)	192, 396
Csp6I	GTAC	3 cut(s)	314, 434, 872
CviQI	GTAC	3 cut(s)	314, 434, 872
DdeI	CTNAG	3 cut(s)	382, 513, 675
DpnI	GATC	7 cut(s)	161, 227, 658, 666, 699, 743, 894
DpnII	GATC	7 cut(s)	159, 225, 656, 664, 697, 741, 892
DrdI	GACNNNNNNGTC	1 cut(s)	407
DseDI	GACNNNNNNGTC	1 cut(s)	407
Eco105I	TACGTA	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	660
Eco147I	AGGCCT	1 cut(s)	737
Eco57I	CTGAAG	1 cut(s)	651
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
FauI	CCCGC	1 cut(s)	210
FbaI	TGATCA	1 cut(s)	697
FblI	GTMKAC	2 cut(s)	5, 590
Fnu4HI	GCNGC	2 cut(s)	300, 705
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	2 cut(s)	300, 705
GluI	GCNGC	2 cut(s)	300, 705
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	4 cut(s)	50, 467, 724, 737
HapII	CCGG	5 cut(s)	231, 243, 468, 668, 725
HgaI	GACGC	2 cut(s)	192, 396
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	5 cut(s)	88, 114, 139, 671, 940
HpaII	CCGG	5 cut(s)	231, 243, 468, 668, 725
HphI	GGTGA	1 cut(s)	198
Hpy166II	GTNNAC	3 cut(s)	6, 400, 591
Hpy188I	TCNGA	3 cut(s)	136, 631, 676
Hpy188III	TCNNGA	8 cut(s)	100, 151, 384, 581, 668, 848, 857, 944
Hpy8I	GTNNAC	3 cut(s)	6, 400, 591
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	3 cut(s)	313, 409, 887
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	5 cut(s)	500, 707, 801, 867, 912
HpyF10VI	GCNNNNNNNGC	5 cut(s)	200, 299, 734, 840, 909
HpyF3I	CTNAG	3 cut(s)	382, 513, 675
HpySE526I	ACGT	1 cut(s)	568
Kpn2I	TCCGGA	1 cut(s)	667
KroI	GCCGGC	2 cut(s)	242, 724
KroNI	GCCGGC	2 cut(s)	244, 726
Ksp22I	TGATCA	1 cut(s)	697
Kzo9I	GATC	7 cut(s)	159, 225, 656, 664, 697, 741, 892
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	1 cut(s)	156
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	3 cut(s)	43, 204, 887
MalI	GATC	7 cut(s)	161, 227, 658, 666, 699, 743, 894
MboI	GATC	7 cut(s)	159, 225, 656, 664, 697, 741, 892
MboII	GAAGA	4 cut(s)	455, 644, 872, 949
MflI	RGATCY	2 cut(s)	656, 664
MhlI	GDGCHC	2 cut(s)	845, 905
MluCI	AATT	6 cut(s)	28, 172, 212, 263, 573, 914
MlyI	GAGTC	3 cut(s)	97, 123, 680
MmeI	TCCRAC	1 cut(s)	114
MroI	TCCGGA	1 cut(s)	667
MroNI	GCCGGC	2 cut(s)	242, 724
MseI	TTAA	3 cut(s)	366, 404, 881
MslI	CAYNNNNRTG	1 cut(s)	833
MspI	CCGG	5 cut(s)	231, 243, 468, 668, 725
MspR9I	CCNGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	5 cut(s)	200, 299, 734, 840, 909
NaeI	GCCGGC	2 cut(s)	244, 726
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	7 cut(s)	159, 225, 656, 664, 697, 741, 892
NgoMIV	GCCGGC	2 cut(s)	242, 724
NlaIV	GGNNCC	2 cut(s)	666, 902
NmeAIII	GCCGAG	1 cut(s)	744
NmuCI	GTSAC	2 cut(s)	43, 204
NspI	RCATGY	3 cut(s)	299, 431, 838
PaeI	GCATGC	1 cut(s)	838
PagI	TCATGA	3 cut(s)	847, 856, 943
PceI	AGGCCT	1 cut(s)	737
PciI	ACATGT	1 cut(s)	427
PdiI	GCCGGC	2 cut(s)	244, 726
PfeI	GAWTC	2 cut(s)	139, 940
PfoI	TCCNGGA	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	301, 706
Ple19I	CGATCG	2 cut(s)	162, 744
PleI	GAGTC	3 cut(s)	96, 122, 679
PpsI	GAGTC	3 cut(s)	96, 122, 679
Ppu21I	YACGTR	1 cut(s)	569
PscI	ACATGT	1 cut(s)	427
PspFI	CCCAGC	1 cut(s)	143
PspN4I	GGNNCC	2 cut(s)	666, 902
PsrI	GAACNNNNNNTAC	2 cut(s)	417, 449
PstI	CTGCAG	1 cut(s)	709
PsuI	RGATCY	2 cut(s)	656, 664
PvuI	CGATCG	2 cut(s)	162, 744
RsaI	GTAC	3 cut(s)	315, 435, 873
RsaNI	GTAC	3 cut(s)	314, 434, 872
RseI	CAYNNNNRTG	1 cut(s)	833
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	366, 404, 881
SatI	GCNGC	2 cut(s)	300, 705
Sau3AI	GATC	7 cut(s)	159, 225, 656, 664, 697, 741, 892
SchI	GAGTC	3 cut(s)	97, 123, 680
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	2 cut(s)	845, 905
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	2 cut(s)	52, 705
SmiMI	CAYNNNNRTG	1 cut(s)	833
SnaBI	TACGTA	1 cut(s)	569
SphI	GCATGC	1 cut(s)	838
Sse9I	AATT	6 cut(s)	28, 172, 212, 263, 573, 914
SseBI	AGGCCT	1 cut(s)	737
SsiI	CCGC	2 cut(s)	217, 300
SspI	AATATT	1 cut(s)	598
StuI	AGGCCT	1 cut(s)	737
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	3 cut(s)	313, 409, 887
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	9 cut(s)	5, 69, 86, 158, 411, 507, 547, 740, 744
TasI	AATT	6 cut(s)	28, 172, 212, 263, 573, 914
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	2 cut(s)	139, 940
Tru1I	TTAA	3 cut(s)	366, 404, 881
Tru9I	TTAA	3 cut(s)	366, 404, 881
TseFI	GTSAC	2 cut(s)	43, 204
TseI	GCWGC	1 cut(s)	704
Tsp45I	GTSAC	2 cut(s)	43, 204
TspDTI	ATGAA	5 cut(s)	456, 465, 751, 845, 873
TspGWI	ACGGA	1 cut(s)	246
XapI	RAATTY	2 cut(s)	573, 914
XceI	RCATGY	3 cut(s)	299, 431, 838
XmiI	GTMKAC	2 cut(s)	5, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.