Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005530

Physical Location & Seq

Genomic Coordinates Forward (+)

9604115 .. 9605015

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G083100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAAAGAGGAGATCAAGGCCAGGGCACTCAAGAAAGAGTGGGACTTACTGATAAAGGATTACAACGTTTGCGTTGCGTTTCTGCTGGTCTTGTCCAACTCCGCAGAAGAGGCTGCTGTGAGAGAACCGTTAGATCAAGCTGCAGTGTTGTTGAGACCAAAACCTGCAAGCAAAGCGTCGGTTGAGGCCTTGGAGAAGTTGGTGTTTGATGGAGAAGTAGATTATCAGTGTGTGGTTTGCATGGAGGAGATCGTGCGTGGGGATCAAGTCACATGCTTGCCATGCTCTCATGTGTTTCATGGAAACTGCGTTGTCAAATGGCTAAAGCTGAGTCATACCTGCCCTGTTTGCAGGTTCAAGTTACCAACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

125

Amino Acids

13.95

Weight (kDa)

5.94

Isoelectric Point (pI)

23.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28951 FvH4_5g00951
malus_domestica	MD04G1076500.v1.1 MD04G1076600.v1.1 MD04G1076700.v1.1
prunus_persica	Prupe.5G082500_v2.0.a1 Prupe.5G082700_v2.0.a1 Prupe.5G082800_v2.0.a1 Prupe.5G083100_v2.0.a1 Prupe.5G083200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0200431
rosa_laevigata	RLG00000003726 RLG00000034854
rosa_multiflora	Rmu_sc0000068.1_g000008 Rmu_sc0000617.1_g000040 Rmu_sc0014686.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256000
rosa_rugosa	Rorug07G0060200
rosa_samantha	Rh5BG360300 Rh5BG360400 Rh5CG385300 Rh5DG375000 Rh5DG375100 Rh7AG185600 Rh7BG188700 Rh7CG195900 Rh7DG189700
rosa_wichuraiana	Rw5G032940 Rw7G016270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	172, 342, 347
AciI	CCGC	1 cut(s)	102
AclI	AACGTT	1 cut(s)	66
AclWI	GGATC	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	2 cut(s)	140, 328
AluI	AGCT	2 cut(s)	140, 328
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	270
AoxI	GGCC	2 cut(s)	18, 186
ApeKI	GCWGC	2 cut(s)	113, 140
BaeGI	GKGCMC	1 cut(s)	28
BbvI	GCAGC	2 cut(s)	100, 127
BccI	CCATC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	148
BfmI	CTRYAG	1 cut(s)	141
BfuAI	ACCTGC	3 cut(s)	172, 342, 347
BisI	GCNGC	2 cut(s)	114, 141
BlsI	GCNGC	2 cut(s)	115, 142
Bme1390I	CCNGG	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	21, 189
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	21, 189
BseMII	CTCAG	1 cut(s)	320
BseRI	GAGGAG	2 cut(s)	23, 260
BseSI	GKGCMC	1 cut(s)	28
BseXI	GCAGC	2 cut(s)	100, 127
BshFI	GGCC	2 cut(s)	20, 188
BslFI	GGGAC	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	20, 188
Bso31I	GGTCTC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	4 cut(s)	12, 133, 249, 262
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	2 cut(s)	20, 188
BspCNI	CTCAG	1 cut(s)	321
BspMAI	CTGCAG	1 cut(s)	145
BspMI	ACCTGC	3 cut(s)	172, 342, 347
BspPI	GGATC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	21, 189
BssMI	GATC	4 cut(s)	12, 133, 249, 262
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	169, 278
BstDEI	CTNAG	1 cut(s)	329
BstKTI	GATC	4 cut(s)	15, 136, 252, 265
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	4 cut(s)	12, 133, 249, 262
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 173, 282, 348
BstNI	CCWGG	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	100, 127
BsuRI	GGCC	2 cut(s)	20, 188
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	150, 233
BveI	ACCTGC	3 cut(s)	172, 342, 347
Cac8I	GCNNGC	2 cut(s)	169, 278
CseI	GACGC	1 cut(s)	165
CviAII	CATG	5 cut(s)	241, 273, 282, 290, 299
CviJI	RGCY	6 cut(s)	20, 113, 140, 188, 322, 328
CviKI_1	RGCY	6 cut(s)	20, 113, 140, 188, 322, 328
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	4 cut(s)	14, 135, 251, 264
DpnII	GATC	4 cut(s)	12, 133, 249, 262
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	189
Eco147I	AGGCCT	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	5 cut(s)	244, 276, 285, 293, 302
FaiI	YATR	6 cut(s)	242, 274, 283, 291, 300, 336
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	5 cut(s)	240, 272, 281, 289, 298
Fnu4HI	GCNGC	2 cut(s)	114, 141
Fsp4HI	GCNGC	2 cut(s)	114, 141
GluI	GCNGC	2 cut(s)	114, 141
HaeIII	GGCC	2 cut(s)	20, 188
HgaI	GACGC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	244, 276, 285, 293, 302
HinfI	GANTC	1 cut(s)	331
Hpy188III	TCNNGA	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	4 cut(s)	143, 167, 240, 351
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 173, 282, 348
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	5 cut(s)	244, 276, 285, 293, 302
Kzo9I	GATC	4 cut(s)	12, 133, 249, 262
LpnPI	CCDG	7 cut(s)	7, 34, 71, 177, 337, 352, 357
Lsp1109I	GCAGC	2 cut(s)	100, 127
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	268, 360
MalI	GATC	4 cut(s)	14, 135, 251, 264
MboI	GATC	4 cut(s)	12, 133, 249, 262
MboII	GAAGA	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	3 cut(s)	103, 178, 238
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	4 cut(s)	110, 173, 282, 348
NdeII	GATC	4 cut(s)	12, 133, 249, 262
NlaIII	CATG	5 cut(s)	244, 276, 285, 293, 302
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	276
PceI	AGGCCT	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	115, 142
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
Psp1406I	AACGTT	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PstI	CTGCAG	1 cut(s)	145
SatI	GCNGC	2 cut(s)	114, 141
Sau3AI	GATC	4 cut(s)	12, 133, 249, 262
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	6 cut(s)	69, 142, 166, 330, 341, 356
SfcI	CTRYAG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SseBI	AGGCCT	1 cut(s)	188
SsiI	CCGC	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	1 cut(s)	69
TscAI	CASTG	2 cut(s)	150, 233
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	113, 140
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	17, 287
TspRI	CASTG	2 cut(s)	150, 233
XceI	RCATGY	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.