Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002528

Physical Location & Seq

Genomic Coordinates Forward (+)

36097210 .. 36100022

Gene Structure 2813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAGAAGGGTTTTGATTTCAATTCAGAAAACTGATTGTGAGATAGATGACTCTAGTTATGCCCAAACTATCAAGTCCCAAAGACCCAAACCGCCTAGCCCTGTCACCGGCCGAAACCGCCCAGCGACCGCTTTTTATAAAAACGAAGTTGGAGCTTTTCTCAATCGCCGCGCCTTTCTGAGTTTCTTCTTCCCCAAAGCTCGCAGATTTCTTCCAATATCCAGGTATCGTAACGATAAGATGCTTCAAAACGAACCTCAAGCACTGTCAACTTTGCTAGAAGGAAATGTGGATACTAATTTGTCAAATTTGGGACAGAATGGTGGAGTTTACATTCCGCCCAATGAGATTCCTCTTCAAGAGGAGACAAATCTGGTGAATCTTCGAAGGACAATATATCTGACAATCATGTCCGCCAGTGTAGATTATAAGGAAGCAGGTGATAAGCTCCTTCAGATTATGCTTGAGCCAGGTCAAGAGATGGAGTTATGCGTCATGCTTTTGAAATGTTGTAGTCAGGAGAGGTCTTACCTCCGCTATTATGGTCTCTTGGGACAGCGGCTCTGCATGATCAACAGAATCCACCAGGAAAATTTCGAGAAATGTTTTGTTGAACAGTATTCCATGATTCACCAGCTTGAGACGAATGAGCTACATAATGTAGCTAAGTTTTTTGCGCATTTACTCGGAACAGATGCCCTTCCGTGGCATTGCTTGGCCAATATACGGTTAACTGAAGAGGACACCACTGCATCTTCTCGAATTTTCATCAAGATCCTTTTCCAGGAATTGGCCGAACATCTTGGTATTCGTCTGCTTAATGAGCGGCTAGAAGATCCGGCAACGCAAGACTTTTACGACTCTATTTTACCAAGGGACACTCCCAAGAACACCCGTTTTGCTATTAACTTTTTCACATCCATTGGGCTTGGTGGCATCACTGGGAACTTGTGTGAGTATTTGAAGCACATATCACGCATTATCATGCAACAACAAAAAGCAGCGTCTGGTTCAGACTCAGAATCAGAGTTGGATAGTTCTGAGACAGAACCAGTATCAGAATCATCAAGTTCTGAAAGTGAAAGTGATCACGATGAAAGACGCGAGAAGAAACGTAGGAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071006 GO:0071012 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

376

Amino Acids

43.09

Weight (kDa)

6.13

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MA3	PF02847	128 - 235	1.9e-26	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80930
fragaria_vesca	FvH4_3g01450 FvH4_3g43230 FvH4_3g43240 FvH4_3g43240
malus_domestica	MD03G1023500.v1.1 MD11G1028600.v1.1
prunus_persica	Prupe.6G022700_v2.0.a1 Prupe.6G022700_v2.0.a1
pyrus_communis	pycom03g02010 pycom11g02210
rosa_chinensis	RchiOBHm_Chr5g0002291 RchiOBHm_Chr5g0077281 RchiOBHm_Chr5g0077291
rosa_laevigata	RLG00000031014 RLG00000036681 RLG00000036682
rosa_multiflora	Rmu_co8446135.1_g000001 Rmu_sc0000433.1_g000042 Rmu_sc0001492.1_g000008 Rmu_sc0005576.1_g000001 Rmu_sc0006137.1_g000009 Rmu_sc0008383.1_g000001 Rmu_sc0013155.1_g000012 Rmu_ssc0000410.1_g000040
rosa_roxburghii	Rroxscaffold_1G00004680 Rroxscaffold_1G00073650
rosa_rugosa	Rorug04G0394900 Rorug05G0453500
rosa_samantha	Rh5AG017700 Rh5AG508400 Rh5AG508500 Rh5BG020300 Rh5BG529600 Rh5CG019100 Rh5CG019400 Rh5CG554100 Rh5DG018300 Rh5DG542200
rosa_wichuraiana	Rw5G046900 Rw5G046910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	138, 429
AarI	CACCTGC	1 cut(s)	428
AasI	GACNNNNNNGTC	1 cut(s)	409
Acc16I	TGCGCA	1 cut(s)	678
Acc36I	ACCTGC	1 cut(s)	428
AccB7I	CCANNNNNTGG	1 cut(s)	790
AccBSI	CCGCTC	1 cut(s)	826
AccII	CGCG	2 cut(s)	171, 1104
AciI	CCGC	9 cut(s)	92, 118, 129, 169, 338, 414, 535, 559, 826
AclWI	GGATC	2 cut(s)	769, 830
AcoI	YGGCCR	3 cut(s)	109, 717, 792
AcsI	RAATTY	3 cut(s)	307, 592, 762
AcuI	CTGAAG	2 cut(s)	437, 756
AfiI	CCNNNNNNNGG	5 cut(s)	107, 705, 726, 784, 790
AgsI	TTSAA	6 cut(s)	21, 248, 359, 505, 614, 964
AjnI	CCWGG	4 cut(s)	221, 469, 585, 783
AluBI	AGCT	6 cut(s)	155, 200, 448, 637, 652, 665
AluI	AGCT	6 cut(s)	155, 200, 448, 637, 652, 665
Alw26I	GTCTC	4 cut(s)	359, 551, 635, 1037
AlwI	GGATC	2 cut(s)	769, 830
AlwNI	CAGNNNCTG	1 cut(s)	1007
AoxI	GGCC	3 cut(s)	109, 717, 792
ApeKI	GCWGC	1 cut(s)	1001
ApoI	RAATTY	3 cut(s)	307, 592, 762
AspLEI	GCGC	2 cut(s)	173, 679
AsuHPI	GGTGA	4 cut(s)	97, 388, 452, 623
AsuII	TTCGAA	1 cut(s)	385
BalI	TGGCCA	1 cut(s)	719
BbvI	GCAGC	1 cut(s)	1013
BccI	CCATC	1 cut(s)	475
BciT130I	CCWGG	4 cut(s)	223, 471, 587, 785
BciVI	GTATCC	1 cut(s)	286
BclI	TGATCA	2 cut(s)	570, 1087
BcoDI	GTCTC	4 cut(s)	359, 551, 635, 1037
BfaI	CTAG	4 cut(s)	54, 96, 278, 830
BfuAI	ACCTGC	1 cut(s)	428
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	4 cut(s)	169, 560, 827, 1002
BlsI	GCNGC	4 cut(s)	170, 561, 828, 1003
Bme1390I	CCNGG	4 cut(s)	223, 471, 587, 785
BmrFI	CCNGG	4 cut(s)	223, 471, 587, 785
BmrI	ACTGGG	1 cut(s)	951
BmsI	GCATC	4 cut(s)	231, 685, 761, 945
BmuI	ACTGGG	1 cut(s)	951
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
Bpu14I	TTCGAA	1 cut(s)	385
BpuEI	CTTGAG	3 cut(s)	243, 485, 659
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	704, 872
Bsc4I	CCNNNNNNNGG	5 cut(s)	107, 705, 726, 784, 790
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	3 cut(s)	417, 946, 1052
Bse3DI	GCAATG	1 cut(s)	709
BseBI	CCWGG	4 cut(s)	223, 471, 587, 785
BseDI	CCNNGG	2 cut(s)	704, 872
BseGI	GGATG	1 cut(s)	917
BseLI	CCNNNNNNNGG	5 cut(s)	107, 705, 726, 784, 790
BseMI	GCAATG	1 cut(s)	709
BseMII	CTCAG	3 cut(s)	170, 1032, 1032
BseNI	ACTGG	3 cut(s)	417, 946, 1052
BseRI	GAGGAG	1 cut(s)	377
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	1013
BseYI	CCCAGC	1 cut(s)	121
Bsh1236I	CGCG	2 cut(s)	171, 1104
Bsh1285I	CGRYCG	2 cut(s)	112, 129
BshFI	GGCC	3 cut(s)	111, 719, 794
BsiEI	CGRYCG	2 cut(s)	112, 129
BsiSI	CCGG	2 cut(s)	108, 839
BslFI	GGGAC	4 cut(s)	61, 327, 567, 890
BslI	CCNNNNNNNGG	5 cut(s)	107, 705, 726, 784, 790
BsmAI	GTCTC	4 cut(s)	359, 551, 635, 1037
BsmBI	CGTCTC	1 cut(s)	635
BsmFI	GGGAC	4 cut(s)	61, 327, 567, 890
BsnI	GGCC	3 cut(s)	111, 719, 794
Bso31I	GGTCTC	1 cut(s)	551
Bsp119I	TTCGAA	1 cut(s)	385
Bsp143I	GATC	4 cut(s)	570, 774, 835, 1087
BspACI	CCGC	9 cut(s)	92, 118, 129, 169, 338, 414, 535, 559, 826
BspANI	GGCC	3 cut(s)	111, 719, 794
BspCNI	CTCAG	3 cut(s)	171, 1031, 1033
BspFNI	CGCG	2 cut(s)	171, 1104
BspMI	ACCTGC	1 cut(s)	428
BspPI	GGATC	2 cut(s)	769, 830
BspT104I	TTCGAA	1 cut(s)	385
BspTNI	GGTCTC	1 cut(s)	551
BsrBI	CCGCTC	1 cut(s)	826
BsrDI	GCAATG	1 cut(s)	709
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	3 cut(s)	417, 946, 1052
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	704, 872
BssMI	GATC	4 cut(s)	570, 774, 835, 1087
BssT1I	CCWWGG	1 cut(s)	872
Bst2UI	CCWGG	4 cut(s)	223, 471, 587, 785
Bst4CI	ACNGT	3 cut(s)	267, 618, 729
Bst6I	CTCTTC	2 cut(s)	360, 732
BstBI	TTCGAA	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	4 cut(s)	179, 666, 1018, 1041
BstDSI	CCRYGG	1 cut(s)	704
BstENI	CCTNNNNNAGG	1 cut(s)	782
BstF5I	GGATG	1 cut(s)	917
BstFNI	CGCG	2 cut(s)	171, 1104
BstHHI	GCGC	2 cut(s)	173, 679
BstKTI	GATC	4 cut(s)	573, 777, 838, 1090
BstMAI	GTCTC	4 cut(s)	359, 551, 635, 1037
BstMBI	GATC	4 cut(s)	570, 774, 835, 1087
BstMCI	CGRYCG	2 cut(s)	112, 129
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 823
BstNI	CCWGG	4 cut(s)	223, 471, 587, 785
BstSCI	CCNGG	4 cut(s)	221, 469, 585, 783
BstUI	CGCG	2 cut(s)	171, 1104
BstV1I	GCAGC	1 cut(s)	1013
BstX2I	RGATCY	2 cut(s)	774, 835
BstYI	RGATCY	2 cut(s)	774, 835
BstZI	CGGCCG	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	111, 719, 794
BtgI	CCRYGG	1 cut(s)	704
BtsCI	GGATG	1 cut(s)	917
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	4 cut(s)	263, 424, 747, 939
BveI	ACCTGC	1 cut(s)	428
Cac8I	GCNNGC	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	1007
CfoI	GCGC	2 cut(s)	173, 679
Cfr10I	RCCGGY	1 cut(s)	107
CseI	GACGC	3 cut(s)	481, 993, 1110
CviAII	CATG	5 cut(s)	409, 496, 568, 625, 985
DdeI	CTNAG	4 cut(s)	179, 666, 1018, 1041
DpnI	GATC	4 cut(s)	572, 776, 837, 1089
DpnII	GATC	4 cut(s)	570, 774, 835, 1087
DrdI	GACNNNNNNGTC	1 cut(s)	409
DseDI	GACNNNNNNGTC	1 cut(s)	409
EaeI	YGGCCR	3 cut(s)	109, 717, 792
EagI	CGGCCG	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	360, 732
EarI	CTCTTC	2 cut(s)	360, 732
EciI	GGCGGA	2 cut(s)	327, 403
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	872
Eco31I	GGTCTC	1 cut(s)	551
Eco52I	CGGCCG	1 cut(s)	109
Eco57I	CTGAAG	2 cut(s)	437, 756
EcoNI	CCTNNNNNAGG	1 cut(s)	782
EcoRII	CCWGG	4 cut(s)	221, 469, 585, 783
EcoT14I	CCWWGG	1 cut(s)	872
ErhI	CCWWGG	1 cut(s)	872
Esp3I	CGTCTC	1 cut(s)	635
FaeI	CATG	5 cut(s)	412, 499, 571, 628, 988
FaqI	GGGAC	4 cut(s)	61, 327, 567, 890
FatI	CATG	5 cut(s)	408, 495, 567, 624, 984
FbaI	TGATCA	2 cut(s)	570, 1087
Fnu4HI	GCNGC	4 cut(s)	169, 560, 827, 1002
FokI	GGATG	1 cut(s)	904
Fsp4HI	GCNGC	4 cut(s)	169, 560, 827, 1002
FspBI	CTAG	4 cut(s)	54, 96, 278, 830
FspI	TGCGCA	1 cut(s)	678
GlaI	GCGC	2 cut(s)	172, 678
GluI	GCNGC	4 cut(s)	169, 560, 827, 1002
GsaI	CCCAGC	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	111, 719, 794
HapII	CCGG	2 cut(s)	108, 839
HgaI	GACGC	3 cut(s)	481, 993, 1110
HhaI	GCGC	2 cut(s)	173, 679
Hin1II	CATG	5 cut(s)	412, 499, 571, 628, 988
Hin6I	GCGC	2 cut(s)	171, 677
HinP1I	GCGC	2 cut(s)	171, 677
HincII	GTYRAC	2 cut(s)	270, 732
HindII	GTYRAC	2 cut(s)	270, 732
HinfI	GANTC	9 cut(s)	50, 349, 379, 579, 628, 860, 1016, 1022, 1061
HpaI	GTTAAC	1 cut(s)	732
HpaII	CCGG	2 cut(s)	108, 839
HphI	GGTGA	4 cut(s)	97, 388, 452, 623
Hpy166II	GTNNAC	3 cut(s)	270, 331, 732
Hpy188III	TCNNGA	7 cut(s)	359, 476, 518, 598, 759, 772, 1091
Hpy8I	GTNNAC	3 cut(s)	270, 331, 732
HpyAV	CCTTC	4 cut(s)	275, 381, 461, 710
HpyCH4III	ACNGT	3 cut(s)	267, 618, 729
HpyCH4IV	ACGT	1 cut(s)	1114
HpyCH4V	TGCA	3 cut(s)	567, 752, 988
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 823
HpyF3I	CTNAG	4 cut(s)	179, 666, 1018, 1041
HpySE526I	ACGT	1 cut(s)	1114
Hsp92II	CATG	5 cut(s)	412, 499, 571, 628, 988
HspAI	GCGC	2 cut(s)	171, 677
Ksp22I	TGATCA	2 cut(s)	570, 1087
KspAI	GTTAAC	1 cut(s)	732
Kzo9I	GATC	4 cut(s)	570, 774, 835, 1087
LmnI	GCTCC	2 cut(s)	152, 453
Lsp1109I	GCAGC	1 cut(s)	1013
LweI	GCATC	4 cut(s)	231, 685, 761, 945
MaeI	CTAG	4 cut(s)	54, 96, 278, 830
MaeII	ACGT	1 cut(s)	1114
MaeIII	GTNAC	2 cut(s)	103, 230
MalI	GATC	4 cut(s)	572, 776, 837, 1089
MbiI	CCGCTC	1 cut(s)	826
MboI	GATC	4 cut(s)	570, 774, 835, 1087
MboII	GAAGA	9 cut(s)	178, 181, 203, 347, 374, 747, 749, 845, 1120
MflI	RGATCY	2 cut(s)	774, 835
MlsI	TGGCCA	1 cut(s)	719
MluCI	AATT	7 cut(s)	21, 298, 307, 592, 762, 788, 1123
MluNI	TGGCCA	1 cut(s)	719
MlyI	GAGTC	3 cut(s)	44, 854, 1010
MmeI	TCCRAC	2 cut(s)	130, 1011
MnlI	CCTC	6 cut(s)	267, 355, 363, 516, 542, 733
Mox20I	TGGCCA	1 cut(s)	719
MscI	TGGCCA	1 cut(s)	719
MseI	TTAA	3 cut(s)	731, 819, 906
MslI	CAYNNNNRTG	1 cut(s)	983
Msp20I	TGGCCA	1 cut(s)	719
MspA1I	CMGCKG	1 cut(s)	559
MspI	CCGG	2 cut(s)	108, 839
MspR9I	CCNGG	4 cut(s)	223, 471, 587, 785
MvaI	CCWGG	4 cut(s)	223, 471, 587, 785
MvnI	CGCG	2 cut(s)	171, 1104
MwoI	GCNNNNNNNGC	2 cut(s)	117, 823
NdeII	GATC	4 cut(s)	570, 774, 835, 1087
NlaIII	CATG	5 cut(s)	412, 499, 571, 628, 988
NmuCI	GTSAC	1 cut(s)	103
NsbI	TGCGCA	1 cut(s)	678
NspV	TTCGAA	1 cut(s)	385
PaqCI	CACCTGC	1 cut(s)	428
PfeI	GAWTC	6 cut(s)	349, 379, 579, 628, 1022, 1061
PflMI	CCANNNNNTGG	1 cut(s)	790
PfoI	TCCNGGA	1 cut(s)	783
PkrI	GCNGC	4 cut(s)	170, 561, 828, 1003
PleI	GAGTC	3 cut(s)	44, 854, 1010
PpsI	GAGTC	3 cut(s)	44, 854, 1010
PsiI	TTATAA	2 cut(s)	138, 429
Psp6I	CCWGG	4 cut(s)	221, 469, 585, 783
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	4 cut(s)	221, 469, 585, 783
PstNI	CAGNNNCTG	1 cut(s)	1007
PsuI	RGATCY	2 cut(s)	774, 835
RseI	CAYNNNNRTG	1 cut(s)	983
SaqAI	TTAA	3 cut(s)	731, 819, 906
SatI	GCNGC	4 cut(s)	169, 560, 827, 1002
Sau3AI	GATC	4 cut(s)	570, 774, 835, 1087
SchI	GAGTC	3 cut(s)	44, 854, 1010
ScrFI	CCNGG	4 cut(s)	223, 471, 587, 785
SfaNI	GCATC	4 cut(s)	231, 685, 761, 945
SfuI	TTCGAA	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	983
SmlI	CTYRAG	3 cut(s)	258, 464, 638
SmoI	CTYRAG	3 cut(s)	258, 464, 638
Sse9I	AATT	7 cut(s)	21, 298, 307, 592, 762, 788, 1123
SsiI	CCGC	9 cut(s)	92, 118, 129, 169, 338, 414, 535, 559, 826
SspMI	CTAG	4 cut(s)	54, 96, 278, 830
StyD4I	CCNGG	4 cut(s)	221, 469, 585, 783
StyI	CCWWGG	1 cut(s)	872
TaaI	ACNGT	3 cut(s)	267, 618, 729
TaiI	ACGT	1 cut(s)	1117
TaqI	TCGA	3 cut(s)	385, 597, 760
TasI	AATT	7 cut(s)	21, 298, 307, 592, 762, 788, 1123
TauI	GCSGC	3 cut(s)	171, 562, 829
TfiI	GAWTC	6 cut(s)	349, 379, 579, 628, 1022, 1061
Tru1I	TTAA	3 cut(s)	731, 819, 906
Tru9I	TTAA	3 cut(s)	731, 819, 906
TscAI	CASTG	4 cut(s)	270, 424, 754, 946
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	1001
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	2 cut(s)	757, 1110
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	4 cut(s)	270, 424, 754, 946
Van91I	CCANNNNNTGG	1 cut(s)	790
XagI	CCTNNNNNAGG	1 cut(s)	782
XapI	RAATTY	3 cut(s)	307, 592, 762
XspI	CTAG	4 cut(s)	54, 96, 278, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.