Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005576.1

Orthogroup ID

OG0002528

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1832

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005576.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 898 bp

atggctagacggcacagtggtgaatcgagtgatgatgatgtgaggggtggaagagataagtaccgtcagcatagaagtaaaagcgaatcgaggtcaaacaatcatcttgagcaggatattttcaagcctgatcctgatttcattgagaatgagaagcgctatgaagatgtgaagaaaacaattcttggtgaagactctgaagaggaaggttctgatgcagcttcagatggtgaggatgatgatgatgaggaggaggacgaagatgatgatgaggaggaggatgagcaggaaatgaaaataagagatgagacggagacaaatcttgtgaatcttcgaaggacaatatatctgactatcatgtccagtgtagattttgaggaagcaggtcataagctccttaagattaagcttgagccaggccaagagatggagctatgtgtcatgcttttggaatgttgcagtcaggagagaacctacctccgctattatggtctcttgggacagcggctctgcatgatcaacagaatccaccaggaaaattttgagaaatgttttgtccagcagtattcaatgattcaccggcttgaaacaaacaagctacgtaatgtagccaagttttttgcgcatttactgggaacagatgcccttccgtggcattgcttagcctatatacggttaactgaagaggataccacttcttcttctcgtatttttatcaagatccttttccaggaattgtcagagcatcttggtatccgtctgcttaatgagcggttgactgatcctgcaatgcaagactcttacaaatctattttcccaagggataatcccaagaacacccgatttgctatcaactttttcacatccattgggcttggcggcataactgagaacctgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071006 GO:0071012 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

299

Amino Acids

34.98

Weight (kDa)

4.74

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80930
fragaria_vesca	FvH4_3g01450 FvH4_3g43230 FvH4_3g43240 FvH4_3g43240
malus_domestica	MD03G1023500.v1.1 MD11G1028600.v1.1
prunus_persica	Prupe.6G022700_v2.0.a1 Prupe.6G022700_v2.0.a1
pyrus_communis	pycom03g02010 pycom11g02210
rosa_chinensis	RchiOBHm_Chr5g0002291 RchiOBHm_Chr5g0077281 RchiOBHm_Chr5g0077291
rosa_laevigata	RLG00000031014 RLG00000036681 RLG00000036682
rosa_multiflora	Rmu_co8446135.1_g000001 Rmu_sc0000433.1_g000042 Rmu_sc0001492.1_g000008 Rmu_sc0005576.1_g000001 Rmu_sc0006137.1_g000009 Rmu_sc0008383.1_g000001 Rmu_sc0013155.1_g000012 Rmu_ssc0000410.1_g000040
rosa_roxburghii	Rroxscaffold_1G00004680 Rroxscaffold_1G00073650
rosa_rugosa	Rorug04G0394900 Rorug05G0453500
rosa_samantha	Rh5AG017700 Rh5AG508400 Rh5AG508500 Rh5BG020300 Rh5BG529600 Rh5CG019100 Rh5CG019400 Rh5CG554100 Rh5DG018300 Rh5DG542200
rosa_wichuraiana	Rw5G046900 Rw5G046910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	358
Acc16I	TGCGCA	1 cut(s)	624
Acc36I	ACCTGC	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	427
AccBSI	CCGCTC	1 cut(s)	772
AciI	CCGC	4 cut(s)	481, 505, 772, 879
AclWI	GGATC	3 cut(s)	125, 715, 776
AcsI	RAATTY	1 cut(s)	538
AcuI	CTGAAG	3 cut(s)	207, 219, 702
AfaI	GTAC	1 cut(s)	62
AfeI	AGCGCT	1 cut(s)	158
AfiI	CCNNNNNNNGG	4 cut(s)	427, 651, 672, 730
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	3 cut(s)	124, 570, 587
AjnI	CCWGG	3 cut(s)	415, 531, 729
AleI	CACNNNNGTG	1 cut(s)	18
AluBI	AGCT	5 cut(s)	221, 394, 409, 433, 598
AluI	AGCT	5 cut(s)	221, 394, 409, 433, 598
Alw26I	GTCTC	3 cut(s)	302, 308, 497
AlwI	GGATC	3 cut(s)	125, 715, 776
Aor51HI	AGCGCT	1 cut(s)	158
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	538
AspLEI	GCGC	2 cut(s)	159, 625
AsuHPI	GGTGA	4 cut(s)	32, 200, 242, 569
AsuII	TTCGAA	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	2 cut(s)	221, 421
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	3 cut(s)	417, 533, 731
BciVI	GTATCC	2 cut(s)	682, 764
BclI	TGATCA	1 cut(s)	516
BcoDI	GTCTC	3 cut(s)	302, 308, 497
BfaI	CTAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	160
BfrI	CTTAAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	374
BfuI	GTATCC	2 cut(s)	682, 764
BisI	GCNGC	3 cut(s)	219, 506, 880
BlpI	GCTNAGC	1 cut(s)	661
BlsI	GCNGC	3 cut(s)	220, 507, 881
Bme1390I	CCNGG	3 cut(s)	417, 533, 731
BmrFI	CCNGG	3 cut(s)	417, 533, 731
BmrI	ACTGGG	1 cut(s)	641
BmsI	GCATC	3 cut(s)	205, 631, 754
BmuI	ACTGGG	1 cut(s)	641
BpiI	GAAGAC	1 cut(s)	198
Bpu1102I	GCTNAGC	1 cut(s)	661
Bpu14I	TTCGAA	1 cut(s)	334
BpuEI	CTTGAG	2 cut(s)	128, 431
BsaAI	YACGTR	1 cut(s)	602
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	650, 818
Bsc4I	CCNNNNNNNGG	4 cut(s)	427, 651, 672, 730
Bse118I	RCCGGY	1 cut(s)	579
Bse1I	ACTGG	2 cut(s)	363, 636
Bse3DI	GCAATG	2 cut(s)	655, 795
BseBI	CCWGG	3 cut(s)	417, 533, 731
BseDI	CCNNGG	2 cut(s)	650, 818
BseGI	GGATG	3 cut(s)	241, 286, 863
BseLI	CCNNNNNNNGG	4 cut(s)	427, 651, 672, 730
BseMI	GCAATG	2 cut(s)	655, 795
BseMII	CTCAG	1 cut(s)	879
BseNI	ACTGG	2 cut(s)	363, 636
BseRI	GAGGAG	4 cut(s)	263, 266, 287, 290
BseXI	GCAGC	1 cut(s)	230
BshFI	GGCC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	580
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	4 cut(s)	427, 651, 672, 730
BsmAI	GTCTC	3 cut(s)	302, 308, 497
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	1 cut(s)	420
Bso31I	GGTCTC	1 cut(s)	497
Bsp119I	TTCGAA	1 cut(s)	334
Bsp143I	GATC	4 cut(s)	130, 516, 720, 781
Bsp1720I	GCTNAGC	1 cut(s)	661
BspACI	CCGC	4 cut(s)	481, 505, 772, 879
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	1 cut(s)	880
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	3 cut(s)	125, 715, 776
BspT104I	TTCGAA	1 cut(s)	334
BspTI	CTTAAG	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	772
BsrDI	GCAATG	2 cut(s)	655, 795
BsrFI	RCCGGY	1 cut(s)	579
BsrI	ACTGG	2 cut(s)	363, 636
BssAI	RCCGGY	1 cut(s)	579
BssECI	CCNNGG	2 cut(s)	650, 818
BssMI	GATC	4 cut(s)	130, 516, 720, 781
BssT1I	CCWWGG	1 cut(s)	818
Bst2UI	CCWGG	3 cut(s)	417, 533, 731
Bst4CI	ACNGT	3 cut(s)	17, 65, 675
Bst6I	CTCTTC	3 cut(s)	46, 195, 678
BstAFI	CTTAAG	1 cut(s)	398
BstBAI	YACGTR	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	661, 888
BstDSI	CCRYGG	1 cut(s)	650
BstENI	CCTNNNNNAGG	1 cut(s)	728
BstF5I	GGATG	3 cut(s)	241, 286, 863
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	2 cut(s)	159, 625
BstKTI	GATC	4 cut(s)	133, 519, 723, 784
BstMAI	GTCTC	3 cut(s)	302, 308, 497
BstMBI	GATC	4 cut(s)	130, 516, 720, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	769
BstNI	CCWGG	3 cut(s)	417, 533, 731
BstSCI	CCNGG	3 cut(s)	415, 531, 729
BstSNI	TACGTA	1 cut(s)	602
BstV1I	GCAGC	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BsuI	GTATCC	2 cut(s)	682, 764
BsuRI	GGCC	1 cut(s)	420
BtgI	CCRYGG	1 cut(s)	650
BtsCI	GGATG	3 cut(s)	241, 286, 863
BtsIMutI	CAGTG	2 cut(s)	22, 370
BveI	ACCTGC	1 cut(s)	374
CfoI	GCGC	2 cut(s)	159, 625
Cfr10I	RCCGGY	1 cut(s)	579
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	3 cut(s)	358, 442, 514
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	661, 888
DpnI	GATC	4 cut(s)	132, 518, 722, 783
DpnII	GATC	4 cut(s)	130, 516, 720, 781
DrdI	GACNNNNNNGTC	1 cut(s)	358
DseDI	GACNNNNNNGTC	1 cut(s)	358
Eam1104I	CTCTTC	3 cut(s)	46, 195, 678
EarI	CTCTTC	3 cut(s)	46, 195, 678
Eco105I	TACGTA	1 cut(s)	602
Eco130I	CCWWGG	1 cut(s)	818
Eco31I	GGTCTC	1 cut(s)	497
Eco47III	AGCGCT	1 cut(s)	158
Eco57I	CTGAAG	3 cut(s)	207, 219, 702
EcoNI	CCTNNNNNAGG	1 cut(s)	728
EcoRII	CCWGG	3 cut(s)	415, 531, 729
EcoT14I	CCWWGG	1 cut(s)	818
ErhI	CCWWGG	1 cut(s)	818
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	3 cut(s)	361, 445, 517
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	3 cut(s)	357, 441, 513
FbaI	TGATCA	1 cut(s)	516
Fnu4HI	GCNGC	3 cut(s)	219, 506, 880
FokI	GGATG	3 cut(s)	248, 293, 850
Fsp4HI	GCNGC	3 cut(s)	219, 506, 880
FspBI	CTAG	1 cut(s)	6
FspI	TGCGCA	1 cut(s)	624
GlaI	GCGC	2 cut(s)	158, 624
GluI	GCNGC	3 cut(s)	219, 506, 880
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	1 cut(s)	580
HhaI	GCGC	2 cut(s)	159, 625
Hin1II	CATG	3 cut(s)	361, 445, 517
Hin6I	GCGC	2 cut(s)	157, 623
HinP1I	GCGC	2 cut(s)	157, 623
HincII	GTYRAC	2 cut(s)	678, 777
HindII	GTYRAC	2 cut(s)	678, 777
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	7 cut(s)	23, 86, 194, 328, 525, 574, 797
HpaI	GTTAAC	1 cut(s)	678
HpaII	CCGG	1 cut(s)	580
HphI	GGTGA	4 cut(s)	32, 200, 242, 569
Hpy166II	GTNNAC	2 cut(s)	678, 777
Hpy188I	TCNGA	5 cut(s)	199, 214, 226, 351, 742
Hpy188III	TCNNGA	4 cut(s)	107, 134, 464, 718
Hpy8I	GTNNAC	2 cut(s)	678, 777
HpyAV	CCTTC	3 cut(s)	200, 330, 656
HpyCH4III	ACNGT	3 cut(s)	17, 65, 675
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	5 cut(s)	218, 459, 513, 788, 793
HpyF10VI	GCNNNNNNNGC	1 cut(s)	769
HpyF3I	CTNAG	2 cut(s)	661, 888
HpySE526I	ACGT	1 cut(s)	601
Hsp92II	CATG	3 cut(s)	361, 445, 517
HspAI	GCGC	2 cut(s)	157, 623
Ksp22I	TGATCA	1 cut(s)	516
KspAI	GTTAAC	1 cut(s)	678
Kzo9I	GATC	4 cut(s)	130, 516, 720, 781
LmnI	GCTCC	2 cut(s)	399, 430
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	3 cut(s)	205, 631, 754
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	601
MalI	GATC	4 cut(s)	132, 518, 722, 783
MbiI	CCGCTC	1 cut(s)	772
MboI	GATC	4 cut(s)	130, 516, 720, 781
MflI	RGATCY	1 cut(s)	720
MluCI	AATT	3 cut(s)	180, 538, 734
MlyI	GAGTC	2 cut(s)	188, 791
MseI	TTAA	4 cut(s)	399, 405, 677, 765
MslI	CAYNNNNRTG	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	505
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	1 cut(s)	580
MspR9I	CCNGG	3 cut(s)	417, 533, 731
MvaI	CCWGG	3 cut(s)	417, 533, 731
MwoI	GCNNNNNNNGC	1 cut(s)	769
NdeII	GATC	4 cut(s)	130, 516, 720, 781
NlaIII	CATG	3 cut(s)	361, 445, 517
NsbI	TGCGCA	1 cut(s)	624
NspV	TTCGAA	1 cut(s)	334
OliI	CACNNNNGTG	1 cut(s)	18
PfeI	GAWTC	5 cut(s)	23, 86, 328, 525, 574
PflMI	CCANNNNNTGG	1 cut(s)	427
PfoI	TCCNGGA	1 cut(s)	729
PkrI	GCNGC	3 cut(s)	220, 507, 881
PleI	GAGTC	2 cut(s)	188, 791
PpsI	GAGTC	2 cut(s)	188, 791
Ppu21I	YACGTR	1 cut(s)	602
Psp6I	CCWGG	3 cut(s)	415, 531, 729
PspGI	CCWGG	3 cut(s)	415, 531, 729
PsuI	RGATCY	1 cut(s)	720
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	4 cut(s)	399, 405, 677, 765
SatI	GCNGC	3 cut(s)	219, 506, 880
Sau3AI	GATC	4 cut(s)	130, 516, 720, 781
SchI	GAGTC	2 cut(s)	188, 791
ScrFI	CCNGG	3 cut(s)	417, 533, 731
SfaNI	GCATC	3 cut(s)	205, 631, 754
SfuI	TTCGAA	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	3 cut(s)	107, 398, 410
SmoI	CTYRAG	3 cut(s)	107, 398, 410
SnaBI	TACGTA	1 cut(s)	602
Sse9I	AATT	3 cut(s)	180, 538, 734
SsiI	CCGC	4 cut(s)	481, 505, 772, 879
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	3 cut(s)	415, 531, 729
StyI	CCWWGG	1 cut(s)	818
TaaI	ACNGT	3 cut(s)	17, 65, 675
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	3 cut(s)	26, 89, 334
TasI	AATT	3 cut(s)	180, 538, 734
TauI	GCSGC	2 cut(s)	508, 882
TfiI	GAWTC	5 cut(s)	23, 86, 328, 525, 574
Tru1I	TTAA	4 cut(s)	399, 405, 677, 765
Tru9I	TTAA	4 cut(s)	399, 405, 677, 765
TscAI	CASTG	2 cut(s)	22, 370
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	130, 177, 308
TspGWI	ACGGA	3 cut(s)	326, 639, 746
TspRI	CASTG	2 cut(s)	22, 370
Van91I	CCANNNNNTGG	1 cut(s)	427
Vha464I	CTTAAG	1 cut(s)	398
XagI	CCTNNNNNAGG	1 cut(s)	728
XapI	RAATTY	1 cut(s)	538
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.