pycom03g02010

pre-mRNA-splicing factor CWC22 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
1521776 .. 1524014
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g02010.3

Sequence Viewer

Length: 1380 bp
ATGGCTAGAGGGTATGGTAGTGAGTCGAGTGATGATGATATCAGAGGTGAATATCGTCGTCATAGTAGTAGAACTAAGCATCATGATGAGCGTCGTAGAGATGTGGACAGGGGAAAGTCCACTGAAAGGGATCTCAGAGGCAGAGAAAGTTCTGATGAAGAAGGGGAGTTGATAGAGAGAGACAGGGGCAGCCAAAGGAATGAAAGAAAGTCTGAGAATGGGCGTAGAGAACGGGAAAAAGGTAGTTACCGGGATGAAAGGGAGAAACCACATAGGCGTGAGAGTGAACGTAGAGGGGTAGATACTGATGGTGGTCATAGAAGTAGGGGCCGAGATTCGCGTCACTATTCAGAGCGCAAGGATGAAAGGGAAGAGCATAGAACATTAGAACGGAAAAAGGATAAAAGAGATGATGATCAGAGAATGTTTCATAAAAACCTGGAAGATGAAAGACGAGAAGGAGAAGATAGGAGTTTGAGGGAAAATAATGGAAATTCAATACCTCAAGGACGGTTGCCAGAAGGAAAAATGAACACTGATGTGGCAAATACAGGAAAGAGTGGTGGGGTTTACATTCCCCCATTTAAGTTGGCCCGTATGATGAAAGAGGTTGAAGATAAAAGCAGCGTTCAGTATCAGCGACTGACATGGGATGCCCTTCGAAAGAGCATTAATGGTCTTGTGAACAAGGTCAATGCTGCAAACATAAAAAATATAATTCCTGAAATTTTTGCTGAGAATCTGATTCGTGGAAGGGGCCTCTTTTGCCGTTCGTGTATGAAATCACAGATGGCATCTCCAGGTTTCACTGATGTGTTTGCCGCCTTGGTTGCTGTTGTCAACACAAAGTTTCCTGAGGTTGGTGAACTTTTGTTGAGAAGAATTGTCTTACAGCTTAAGAGAGCATTTAAGCGGAATGACAAGCCGCAACTACTAGCTGCTGTTAAATTTATAGCTCATCTGGTCAACCAGCAAGTGGCTCATGAGATTATTGCCTTAGAATTGCTCACAGTTCTGTTGGAGAACCCTACGGATGACAGTGTTGAAGTTGCTGTTGGCTTTGTCACCGAGTGTGGATCATTACTGCAGGACCTTTCGCCTAAAGGGTTGCACGGCATCTTTGAGCGCTTTCGTGGAATTCTTCATGAGGGAGAAATAGACAAGAGAGTTCAATATCTGATTGAAAACTTATTTGCGATACGGAAAGCGAAGTTTCAGGGGCACCCAGCTGTTCGTCCAGAACTGGACCTTGTAGACCAGGAAGACCAGTTGACACATGAAATTTCTCTTGAAGAGAAAATAGATTCAGAAGTTACCCTTGATCGATCTTCAAGATCGATCCTGATTTCCTTGAGAACGAGAACCGCTATGAAGAACTAA

Protein Analysis

460

Amino Acids

53.04

Weight (kDa)

9.01

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1221
AccB7I CCANNNNNTGG 1 cut(s) 976
AccI GTMKAC 1 cut(s) 1254
AccII CGCG 1 cut(s) 340
AciI CCGC 4 cut(s) 822, 913, 926, 1365
AclWI GGATC 3 cut(s) 138, 1084, 1333
AcsI RAATTY 5 cut(s) 493, 726, 947, 1137, 1281
AdeI CACNNNGTG 1 cut(s) 1071
AfeI AGCGCT 1 cut(s) 1127
AfiI CCNNNNNNNGG 3 cut(s) 126, 860, 976
AflII CTTAAG 1 cut(s) 896
AgsI TTSAA 7 cut(s) 498, 614, 1046, 1172, 1184, 1292, 1332
AjnI CCWGG 3 cut(s) 438, 799, 1257
AjuI GAANNNNNNNTTGG 2 cut(s) 1038, 1070
AleI CACNNNNGTG 2 cut(s) 539, 812
AluBI AGCT 4 cut(s) 895, 938, 956, 1229
AluI AGCT 4 cut(s) 895, 938, 956, 1229
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 3 cut(s) 138, 1084, 1333
AlwNI CAGNNNCTG 1 cut(s) 643
Aor51HI AGCGCT 1 cut(s) 1127
AoxI GGCC 3 cut(s) 328, 591, 757
ApeKI GCWGC 4 cut(s) 189, 624, 698, 938
ApoI RAATTY 5 cut(s) 493, 726, 947, 1137, 1281
AseI ATTAAT 1 cut(s) 672
AspLEI GCGC 2 cut(s) 357, 1128
AspS9I GGNCC 5 cut(s) 328, 592, 757, 1090, 1246
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 3 cut(s) 59, 875, 1057
AsuII TTCGAA 1 cut(s) 661
AvaII GGWCC 2 cut(s) 1090, 1246
AxyI CCTNAGG 1 cut(s) 855
BaeGI GKGCMC 1 cut(s) 1224
BanI GGYRCC 1 cut(s) 1221
BbsI GAAGAC 1 cut(s) 1269
BbvI GCAGC 4 cut(s) 201, 636, 685, 925
BccI CCATC 2 cut(s) 302, 784
BceAI ACGGC 2 cut(s) 753, 1129
BciT130I CCWGG 3 cut(s) 440, 801, 1259
BclI TGATCA 1 cut(s) 415
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 2 cut(s) 6, 935
BfmI CTRYAG 1 cut(s) 1085
BfoI RGCGCY 1 cut(s) 1129
BfrI CTTAAG 1 cut(s) 896
BisI GCNGC 6 cut(s) 190, 625, 699, 822, 926, 939
BlsI GCNGC 6 cut(s) 191, 626, 700, 823, 927, 940
Bme1390I CCNGG 4 cut(s) 251, 440, 801, 1259
Bme18I GGWCC 2 cut(s) 1090, 1246
BmgT120I GGNCC 5 cut(s) 328, 592, 757, 1090, 1246
BmiI GGNNCC 3 cut(s) 329, 758, 1223
BmrFI CCNGG 4 cut(s) 251, 440, 801, 1259
BmsI GCATC 4 cut(s) 88, 643, 803, 1125
BpiI GAAGAC 1 cut(s) 1269
BpmI CTGGAG 1 cut(s) 783
Bpu14I TTCGAA 1 cut(s) 661
BpuEI CTTGAG 2 cut(s) 489, 1372
BpuMI CCSGG 1 cut(s) 251
Bsa29I ATCGAT 2 cut(s) 1324, 1337
BsaBI GATNNNNATC 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 825
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 860, 976
Bse1I ACTGG 2 cut(s) 1248, 1267
Bse21I CCTNAGG 1 cut(s) 855
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 3 cut(s) 440, 801, 1259
BseCI ATCGAT 2 cut(s) 1324, 1337
BseDI CCNNGG 1 cut(s) 825
BseGI GGATG 4 cut(s) 259, 367, 658, 1039
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 3 cut(s) 126, 860, 976
BseMII CTCAG 4 cut(s) 148, 204, 726, 846
BseNI ACTGG 2 cut(s) 1248, 1267
BseSI GKGCMC 1 cut(s) 1224
BseXI GCAGC 4 cut(s) 201, 636, 685, 925
BseYI CCCAGC 1 cut(s) 1225
Bsh1236I CGCG 1 cut(s) 340
BshFI GGCC 3 cut(s) 330, 593, 759
BshNI GGYRCC 1 cut(s) 1221
BshVI ATCGAT 2 cut(s) 1324, 1337
BsiSI CCGG 1 cut(s) 250
BslI CCNNNNNNNGG 3 cut(s) 126, 860, 976
BsmAI GTCTC 1 cut(s) 174
BsnI GGCC 3 cut(s) 330, 593, 759
Bsp119I TTCGAA 1 cut(s) 661
Bsp1286I GDGCHC 1 cut(s) 1224
Bsp143I GATC 7 cut(s) 130, 415, 1076, 1321, 1325, 1334, 1338
BspACI CCGC 4 cut(s) 822, 913, 926, 1365
BspANI GGCC 3 cut(s) 330, 593, 759
BspCNI CTCAG 4 cut(s) 147, 205, 727, 847
BspDI ATCGAT 2 cut(s) 1324, 1337
BspFNI CGCG 1 cut(s) 340
BspHI TCATGA 3 cut(s) 82, 982, 1144
BspLI GGNNCC 3 cut(s) 329, 758, 1223
BspMAI CTGCAG 1 cut(s) 1089
BspPI GGATC 3 cut(s) 138, 1084, 1333
BspQI GCTCTTC 1 cut(s) 366
BspT104I TTCGAA 1 cut(s) 661
BspT107I GGYRCC 1 cut(s) 1221
BspTI CTTAAG 1 cut(s) 896
BsrI ACTGG 2 cut(s) 1248, 1267
BssECI CCNNGG 1 cut(s) 825
BssMI GATC 7 cut(s) 130, 415, 1076, 1321, 1325, 1334, 1338
BssT1I CCWWGG 1 cut(s) 825
Bst2UI CCWGG 3 cut(s) 440, 801, 1259
Bst4CI ACNGT 3 cut(s) 513, 1012, 1040
Bst6I CTCTTC 2 cut(s) 366, 1287
BstAFI CTTAAG 1 cut(s) 896
BstBI TTCGAA 1 cut(s) 661
BstDEI CTNAG 6 cut(s) 75, 134, 213, 735, 855, 997
BstF5I GGATG 4 cut(s) 259, 367, 658, 1039
BstFNI CGCG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 1129
BstHHI GCGC 2 cut(s) 357, 1128
BstKTI GATC 7 cut(s) 133, 418, 1079, 1324, 1328, 1337, 1341
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 7 cut(s) 130, 415, 1076, 1321, 1325, 1334, 1338
BstMWI GCNNNNNNNGC 2 cut(s) 765, 830
BstNI CCWGG 3 cut(s) 440, 801, 1259
BstSCI CCNGG 4 cut(s) 249, 438, 799, 1257
BstSFI CTRYAG 1 cut(s) 1085
BstSLI GKGCMC 1 cut(s) 1224
BstUI CGCG 1 cut(s) 340
BstV1I GCAGC 4 cut(s) 201, 636, 685, 925
BstV2I GAAGAC 1 cut(s) 1269
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
Bsu15I ATCGAT 2 cut(s) 1324, 1337
Bsu36I CCTNAGG 1 cut(s) 855
BsuRI GGCC 3 cut(s) 330, 593, 759
BsuTUI ATCGAT 2 cut(s) 1324, 1337
BtsCI GGATG 4 cut(s) 259, 367, 658, 1039
BtsIMutI CAGTG 4 cut(s) 120, 534, 807, 1045
CaiI CAGNNNCTG 1 cut(s) 643
CciI TCATGA 3 cut(s) 82, 982, 1144
CfoI GCGC 2 cut(s) 357, 1128
Cfr13I GGNCC 5 cut(s) 328, 592, 757, 1090, 1246
ClaI ATCGAT 2 cut(s) 1324, 1337
CseI GACGC 2 cut(s) 80, 329
CviAII CATG 5 cut(s) 83, 648, 983, 1145, 1277
DdeI CTNAG 6 cut(s) 75, 134, 213, 735, 855, 997
DpnI GATC 7 cut(s) 132, 417, 1078, 1323, 1327, 1336, 1340
DpnII GATC 7 cut(s) 130, 415, 1076, 1321, 1325, 1334, 1338
DraIII CACNNNGTG 1 cut(s) 1071
Eam1104I CTCTTC 2 cut(s) 366, 1287
EarI CTCTTC 2 cut(s) 366, 1287
Eco130I CCWWGG 1 cut(s) 825
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 1090, 1246
Eco47III AGCGCT 1 cut(s) 1127
Eco81I CCTNAGG 1 cut(s) 855
EcoO109I RGGNCCY 2 cut(s) 757, 1090
EcoRI GAATTC 1 cut(s) 1137
EcoRII CCWGG 3 cut(s) 438, 799, 1257
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 825
ErhI CCWWGG 1 cut(s) 825
FaeI CATG 5 cut(s) 86, 651, 986, 1148, 1280
FalI AAGNNNNNCTT 2 cut(s) 1302, 1334
FatI CATG 5 cut(s) 82, 647, 982, 1144, 1276
FbaI TGATCA 1 cut(s) 415
FblI GTMKAC 1 cut(s) 1254
Fnu4HI GCNGC 6 cut(s) 190, 625, 699, 822, 926, 939
FokI GGATG 4 cut(s) 266, 374, 665, 1046
Fsp4HI GCNGC 6 cut(s) 190, 625, 699, 822, 926, 939
FspBI CTAG 2 cut(s) 6, 935
GlaI GCGC 2 cut(s) 356, 1127
GluI GCNGC 6 cut(s) 190, 625, 699, 822, 926, 939
GsaI CCCAGC 1 cut(s) 1229
GsuI CTGGAG 1 cut(s) 783
HaeII RGCGCY 1 cut(s) 1129
HaeIII GGCC 3 cut(s) 330, 593, 759
HapII CCGG 1 cut(s) 250
HgaI GACGC 2 cut(s) 80, 329
HhaI GCGC 2 cut(s) 357, 1128
Hin1II CATG 5 cut(s) 86, 651, 986, 1148, 1280
Hin6I GCGC 2 cut(s) 355, 1126
HinP1I GCGC 2 cut(s) 355, 1126
HincII GTYRAC 3 cut(s) 841, 967, 1272
HindII GTYRAC 3 cut(s) 841, 967, 1272
HinfI GANTC 5 cut(s) 23, 335, 739, 745, 1304
HpaII CCGG 1 cut(s) 250
HphI GGTGA 3 cut(s) 59, 875, 1057
Hpy188I TCNGA 9 cut(s) 44, 137, 154, 214, 352, 420, 744, 1179, 1309
Hpy188III TCNNGA 9 cut(s) 83, 722, 854, 983, 1145, 1238, 1289, 1332, 1342
Hpy99I CGWCG 2 cut(s) 60, 96
HpyAV CCTTC 5 cut(s) 155, 452, 515, 668, 747
HpyCH4III ACNGT 3 cut(s) 513, 1012, 1040
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 3 cut(s) 701, 1087, 1111
HpyF10VI GCNNNNNNNGC 2 cut(s) 765, 830
HpyF3I CTNAG 6 cut(s) 75, 134, 213, 735, 855, 997
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 5 cut(s) 86, 651, 986, 1148, 1280
HspAI GCGC 2 cut(s) 355, 1126
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 7 cut(s) 130, 415, 1076, 1321, 1325, 1334, 1338
LguI GCTCTTC 1 cut(s) 366
Lsp1109I GCAGC 4 cut(s) 201, 636, 685, 925
LweI GCATC 4 cut(s) 88, 643, 803, 1125
MaeI CTAG 2 cut(s) 6, 935
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 4 cut(s) 245, 341, 1063, 1312
MalI GATC 7 cut(s) 132, 417, 1078, 1323, 1327, 1336, 1340
MboI GATC 7 cut(s) 130, 415, 1076, 1321, 1325, 1334, 1338
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 1224
MluCI AATT 8 cut(s) 493, 717, 726, 882, 947, 1001, 1137, 1281
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 999
MnlI CCTC 9 cut(s) 38, 131, 287, 471, 513, 601, 770, 850, 1141
MseI TTAA 5 cut(s) 585, 672, 897, 909, 945
MslI CAYNNNNRTG 4 cut(s) 84, 276, 539, 812
MspA1I CMGCKG 1 cut(s) 1229
MspCI CTTAAG 1 cut(s) 896
MspI CCGG 1 cut(s) 250
MspR9I CCNGG 4 cut(s) 251, 440, 801, 1259
MvaI CCWGG 3 cut(s) 440, 801, 1259
MvnI CGCG 1 cut(s) 340
MwoI GCNNNNNNNGC 2 cut(s) 765, 830
NciI CCSGG 1 cut(s) 251
NdeII GATC 7 cut(s) 130, 415, 1076, 1321, 1325, 1334, 1338
NlaIII CATG 5 cut(s) 86, 651, 986, 1148, 1280
NlaIV GGNNCC 3 cut(s) 329, 758, 1223
NmeAIII GCCGAG 1 cut(s) 356
NmuCI GTSAC 2 cut(s) 341, 1063
NspV TTCGAA 1 cut(s) 661
OliI CACNNNNGTG 2 cut(s) 539, 812
PagI TCATGA 3 cut(s) 82, 982, 1144
PciSI GCTCTTC 1 cut(s) 366
PfeI GAWTC 4 cut(s) 335, 739, 745, 1304
PflMI CCANNNNNTGG 1 cut(s) 976
PkrI GCNGC 6 cut(s) 191, 626, 700, 823, 927, 940
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PpuMI RGGWCCY 1 cut(s) 1090
PshBI ATTAAT 1 cut(s) 672
Psp5II RGGWCCY 1 cut(s) 1090
Psp6I CCWGG 3 cut(s) 438, 799, 1257
PspFI CCCAGC 1 cut(s) 1225
PspGI CCWGG 3 cut(s) 438, 799, 1257
PspN4I GGNNCC 3 cut(s) 329, 758, 1223
PspPI GGNCC 5 cut(s) 328, 592, 757, 1090, 1246
PspPPI RGGWCCY 1 cut(s) 1090
PstI CTGCAG 1 cut(s) 1089
PstNI CAGNNNCTG 1 cut(s) 643
PsuI RGATCY 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 1229
RseI CAYNNNNRTG 4 cut(s) 84, 276, 539, 812
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 5 cut(s) 585, 672, 897, 909, 945
SatI GCNGC 6 cut(s) 190, 625, 699, 822, 926, 939
Sau3AI GATC 7 cut(s) 130, 415, 1076, 1321, 1325, 1334, 1338
Sau96I GGNCC 5 cut(s) 328, 592, 757, 1090, 1246
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 4 cut(s) 251, 440, 801, 1259
SduI GDGCHC 1 cut(s) 1224
SfaNI GCATC 4 cut(s) 88, 643, 803, 1125
SfcI CTRYAG 1 cut(s) 1085
SfuI TTCGAA 1 cut(s) 661
SinI GGWCC 2 cut(s) 1090, 1246
SmiMI CAYNNNNRTG 4 cut(s) 84, 276, 539, 812
SmlI CTYRAG 3 cut(s) 504, 896, 1351
SmoI CTYRAG 3 cut(s) 504, 896, 1351
Sse9I AATT 8 cut(s) 493, 717, 726, 882, 947, 1001, 1137, 1281
SsiI CCGC 4 cut(s) 822, 913, 926, 1365
SspMI CTAG 2 cut(s) 6, 935
StyD4I CCNGG 4 cut(s) 249, 438, 799, 1257
StyI CCWWGG 1 cut(s) 825
TaaI ACNGT 3 cut(s) 513, 1012, 1040
TaiI ACGT 1 cut(s) 292
TaqI TCGA 4 cut(s) 26, 661, 1324, 1337
TasI AATT 8 cut(s) 493, 717, 726, 882, 947, 1001, 1137, 1281
TauI GCSGC 2 cut(s) 824, 928
TfiI GAWTC 4 cut(s) 335, 739, 745, 1304
Tru1I TTAA 5 cut(s) 585, 672, 897, 909, 945
Tru9I TTAA 5 cut(s) 585, 672, 897, 909, 945
TscAI CASTG 4 cut(s) 127, 541, 814, 1045
TseFI GTSAC 2 cut(s) 341, 1063
TseI GCWGC 4 cut(s) 189, 624, 698, 938
Tsp45I GTSAC 2 cut(s) 341, 1063
TspGWI ACGGA 3 cut(s) 406, 1046, 1216
TspRI CASTG 4 cut(s) 127, 541, 814, 1045
Van91I CCANNNNNTGG 1 cut(s) 976
Vha464I CTTAAG 1 cut(s) 896
VpaK11BI GGWCC 2 cut(s) 1090, 1246
VspI ATTAAT 1 cut(s) 672
XapI RAATTY 5 cut(s) 493, 726, 947, 1137, 1281
XmiI GTMKAC 1 cut(s) 1254
XspI CTAG 2 cut(s) 6, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.