Rmu_ssc0000410.1_g000040

pre-mRNA-splicing factor CWC22 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000410.1
Physical Location & Seq
Reverse (-)
237866 .. 240380
2515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000410.1_g000040.1.cds

Sequence Viewer

Length: 1350 bp
atggctagaaagcacagtgttgaattgagcgataatgattggcatagaagtaaaaacaatcccaggtcgaactatcgtcttgaacgtggcgatgaaattaattcttcagattctgatagaggatattctacaaaaagaaaaatttttgatagaagatgtagaacaaagcaacatgctgggatatgggatgagcatcataggaaggaatcacgaaataatgatcgacatagcagttcaaaaccacctcatggacgctccacattgctagggggaaaccgaaaccgaaacctgaatactgatgtgtcaagtttgggaaagagggatcgactttatgttccgccttataagttggcccgaaagatgaaagaggtcgaagataaaagtagcattgagtatcagaggctgacatgggatgccttaaaaaaaagcatcaatggggtagtgaacaaggtcaatgctggcaacataaagaatataatccctgagatcttttcagagaatctcattcgcgcttatgtgagaagaattgtcttgaagcttaagatagcattcaagcggaacgacaagccacagctactagctgcagttaaattcattgctcatcttgtaaaccaacaagtggctcatgagattgtagcattggaattgctaactgtactgcttgaaaaccctacagatgacagtgttgaagttgctgtatggtttgtgacagattgtggctcaatgctacaagacctttcaccgacagggctgcgccgaatctttgatcggtttttgaggattcttcatgaaggggaaattgacaaacgtgttcagtttttgattgagggcttattagctttaaggaaaggcaagtttaatggttacccagctgttcgtccagagttggacctcgtggagcaagaagaccagttcactcatttggtttctcttcaagatgagatagatccagaagatagccttaatctcttcaagccggaccctgatttccttaaggaccaaatcaaccccatattttttgctgttaatgagctcggccttgatcttgtcatcgtcggtctcgtccttgatgaaatcgaagaagcacggggccgagaactcataaatctcgtcgttcatcaaatacttccggtcttaatgagaaagagagggagagagaaaagcagagagaaagaggcaaacagatcgatagatcggactgggagtgcagatgatgatagatcaagctcgaggtctagaggtctgcagaatgagatcggggactcgggtcagagagcgaggcaggggaacacggggtcagagactgacgtcggggactcggggtcaggtcggaggcggcttggagaatga

Protein Analysis

449

Amino Acids

51.37

Weight (kDa)

9.18

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AatII GACGTC 1 cut(s) 1311
AccB7I CCANNNNNTGG 2 cut(s) 248, 619
AccII CGCG 1 cut(s) 510
AciI CCGC 3 cut(s) 338, 556, 1336
AclWI GGATC 2 cut(s) 330, 941
AcsI RAATTY 2 cut(s) 141, 590
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 1308
AfaI GTAC 1 cut(s) 657
AfiI CCNNNNNNNGG 2 cut(s) 248, 619
AflII CTTAAG 2 cut(s) 539, 992
AflIII ACRYGT 1 cut(s) 808
AgsI TTSAA 9 cut(s) 23, 83, 237, 535, 553, 665, 689, 935, 973
AhdI GACNNNNNGTC 1 cut(s) 1321
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 7 cut(s) 538, 574, 581, 839, 872, 1033, 1227
AluI AGCT 7 cut(s) 538, 574, 581, 839, 872, 1033, 1227
Alw21I GWGCWC 1 cut(s) 1035
Alw26I GTCTC 2 cut(s) 1064, 1295
AlwI GGATC 2 cut(s) 330, 941
AlwNI CAGNNNCTG 3 cut(s) 113, 403, 1304
Ama87I CYCGRG 3 cut(s) 1228, 1264, 1318
AoxI GGCC 3 cut(s) 351, 1036, 1090
ApeKI GCWGC 2 cut(s) 581, 751
ApoI RAATTY 2 cut(s) 141, 590
AseI ATTAAT 1 cut(s) 99
AspLEI GCGC 2 cut(s) 512, 756
AspS9I GGNCC 5 cut(s) 352, 889, 979, 997, 1090
AsuHPI GGTGA 1 cut(s) 732
AvaI CYCGRG 3 cut(s) 1228, 1264, 1318
AvaII GGWCC 3 cut(s) 889, 979, 997
BanII GRGCYC 1 cut(s) 1035
BauI CACGAG 1 cut(s) 893
BbsI GAAGAC 1 cut(s) 912
Bbv12I GWGCWC 1 cut(s) 1035
BbvI GCAGC 2 cut(s) 568, 738
BcgI CGANNNNNNTGC 4 cut(s) 733, 767, 1167, 1201
BciT130I CCWGG 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 1064, 1295
BfaI CTAG 4 cut(s) 6, 266, 578, 1236
BfmI CTRYAG 3 cut(s) 582, 672, 1244
BfrI CTTAAG 2 cut(s) 539, 992
BglII AGATCT 1 cut(s) 486
BisI GCNGC 3 cut(s) 582, 752, 1337
BlsI GCNGC 3 cut(s) 583, 753, 1338
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 3 cut(s) 889, 979, 997
BmeRI GACNNNNNGTC 1 cut(s) 1321
BmeT110I CYCGRG 3 cut(s) 1228, 1264, 1318
BmgT120I GGNCC 5 cut(s) 352, 889, 979, 997, 1090
BmiI GGNNCC 2 cut(s) 981, 1091
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 1209
BmsI GCATC 3 cut(s) 202, 403, 438
BmuI ACTGGG 1 cut(s) 1209
BoxI GACNNNNGTC 2 cut(s) 1266, 1307
BpiI GAAGAC 1 cut(s) 912
Bsa29I ATCGAT 1 cut(s) 1187
BsaBI GATNNNNATC 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 1308
BsaI GGTCTC 1 cut(s) 1064
BsaJI CCNNGG 1 cut(s) 62
BsaWI WCCGGW 1 cut(s) 1129
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 619
Bse1I ACTGG 2 cut(s) 910, 1204
Bse3DI GCAATG 2 cut(s) 260, 594
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 1 cut(s) 64
BseCI ATCGAT 1 cut(s) 1187
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 2 cut(s) 193, 418
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 248, 619
BseMI GCAATG 2 cut(s) 260, 594
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 2 cut(s) 910, 1204
BseXI GCAGC 2 cut(s) 568, 738
BseYI CCCAGC 2 cut(s) 176, 868
BsgI GTGCAG 1 cut(s) 1227
Bsh1236I CGCG 1 cut(s) 510
BshFI GGCC 3 cut(s) 353, 1038, 1092
BshVI ATCGAT 1 cut(s) 1187
BsiHKAI GWGCWC 1 cut(s) 1035
BsiHKCI CYCGRG 3 cut(s) 1228, 1264, 1318
BsiSI CCGG 2 cut(s) 977, 1130
BslFI GGGAC 2 cut(s) 1274, 1328
BslI CCNNNNNNNGG 2 cut(s) 248, 619
BsmAI GTCTC 2 cut(s) 1064, 1295
BsmFI GGGAC 2 cut(s) 1274, 1328
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 3 cut(s) 353, 1038, 1092
Bso31I GGTCTC 1 cut(s) 1064
BsoBI CYCGRG 3 cut(s) 1228, 1264, 1318
Bsp1286I GDGCHC 1 cut(s) 1035
BspACI CCGC 3 cut(s) 338, 556, 1336
BspANI GGCC 3 cut(s) 353, 1038, 1092
BspCNI CTCAG 1 cut(s) 475
BspDI ATCGAT 1 cut(s) 1187
BspFNI CGCG 1 cut(s) 510
BspHI TCATGA 2 cut(s) 625, 787
BspLI GGNNCC 2 cut(s) 981, 1091
BspMAI CTGCAG 2 cut(s) 586, 1248
BspPI GGATC 2 cut(s) 330, 941
BspTI CTTAAG 2 cut(s) 539, 992
BspTNI GGTCTC 1 cut(s) 1064
BsrDI GCAATG 2 cut(s) 260, 594
BsrI ACTGG 2 cut(s) 910, 1204
BssECI CCNNGG 1 cut(s) 62
BssNI GRCGYC 1 cut(s) 1308
BssSI CACGAG 1 cut(s) 893
Bst2BI CACGAG 1 cut(s) 893
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 3 cut(s) 17, 655, 683
Bst6I CTCTTC 2 cut(s) 936, 974
BstACI GRCGYC 1 cut(s) 1308
BstAFI CTTAAG 2 cut(s) 539, 992
BstC8I GCNNGC 1 cut(s) 460
BstDEI CTNAG 1 cut(s) 483
BstEII GGTNACC 1 cut(s) 863
BstF5I GGATG 2 cut(s) 193, 418
BstFNI CGCG 1 cut(s) 510
BstHHI GCGC 2 cut(s) 512, 756
BstMAI GTCTC 2 cut(s) 1064, 1295
BstNI CCWGG 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 176
BstPAI GACNNNNGTC 2 cut(s) 1266, 1307
BstPI GGTNACC 1 cut(s) 863
BstSCI CCNGG 1 cut(s) 62
BstSFI CTRYAG 3 cut(s) 582, 672, 1244
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 2 cut(s) 568, 738
BstV2I GAAGAC 1 cut(s) 912
BstX2I RGATCY 2 cut(s) 486, 946
BstYI RGATCY 2 cut(s) 486, 946
Bsu15I ATCGAT 1 cut(s) 1187
BsuRI GGCC 3 cut(s) 353, 1038, 1092
BsuTUI ATCGAT 1 cut(s) 1187
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 193, 418
BtsIMutI CAGTG 2 cut(s) 22, 688
Cac8I GCNNGC 1 cut(s) 460
CaiI CAGNNNCTG 3 cut(s) 113, 403, 1304
CciI TCATGA 2 cut(s) 625, 787
CfoI GCGC 2 cut(s) 512, 756
Cfr13I GGNCC 5 cut(s) 352, 889, 979, 997, 1090
ClaI ATCGAT 1 cut(s) 1187
CseI GACGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 656
CviAII CATG 5 cut(s) 173, 248, 408, 626, 788
CviQI GTAC 1 cut(s) 656
DdeI CTNAG 1 cut(s) 483
DriI GACNNNNNGTC 1 cut(s) 1321
Eam1104I CTCTTC 2 cut(s) 936, 974
Eam1105I GACNNNNNGTC 1 cut(s) 1321
EarI CTCTTC 2 cut(s) 936, 974
EciI GGCGGA 1 cut(s) 327
Ecl136II GAGCTC 1 cut(s) 1033
Eco24I GRGCYC 1 cut(s) 1035
Eco31I GGTCTC 1 cut(s) 1064
Eco47I GGWCC 3 cut(s) 889, 979, 997
Eco53kI GAGCTC 1 cut(s) 1033
Eco57I CTGAAG 1 cut(s) 90
Eco88I CYCGRG 3 cut(s) 1228, 1264, 1318
Eco91I GGTNACC 1 cut(s) 863
EcoICRI GAGCTC 1 cut(s) 1033
EcoO65I GGTNACC 1 cut(s) 863
EcoRII CCWGG 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 1035
FaeI CATG 5 cut(s) 176, 251, 411, 629, 791
FalI AAGNNNNNCTT 2 cut(s) 945, 977
FaqI GGGAC 2 cut(s) 1274, 1328
FatI CATG 5 cut(s) 172, 247, 407, 625, 787
Fnu4HI GCNGC 3 cut(s) 582, 752, 1337
FokI GGATG 2 cut(s) 200, 425
FriOI GRGCYC 1 cut(s) 1035
Fsp4HI GCNGC 3 cut(s) 582, 752, 1337
FspBI CTAG 4 cut(s) 6, 266, 578, 1236
GlaI GCGC 2 cut(s) 511, 755
GluI GCNGC 3 cut(s) 582, 752, 1337
GsaI CCCAGC 2 cut(s) 180, 872
HaeIII GGCC 3 cut(s) 353, 1038, 1092
HapII CCGG 2 cut(s) 977, 1130
HgaI GACGC 1 cut(s) 261
HhaI GCGC 2 cut(s) 512, 756
Hin1I GRCGYC 1 cut(s) 1308
Hin1II CATG 5 cut(s) 176, 251, 411, 629, 791
Hin6I GCGC 2 cut(s) 510, 754
HinP1I GCGC 2 cut(s) 510, 754
HindIII AAGCTT 1 cut(s) 536
HinfI GANTC 7 cut(s) 110, 206, 499, 759, 781, 1262, 1316
HpaII CCGG 2 cut(s) 977, 1130
HphI GGTGA 1 cut(s) 732
Hpy166II GTNNAC 3 cut(s) 445, 610, 915
Hpy188I TCNGA 8 cut(s) 109, 115, 399, 496, 1197, 1272, 1300, 1332
Hpy188III TCNNGA 9 cut(s) 80, 210, 532, 626, 788, 881, 935, 950, 1236
Hpy8I GTNNAC 3 cut(s) 445, 610, 915
Hpy99I CGWCG 3 cut(s) 1058, 1115, 1313
HpyAV CCTTC 2 cut(s) 196, 785
HpyCH4III ACNGT 3 cut(s) 17, 655, 683
HpyCH4IV ACGT 3 cut(s) 85, 808, 1308
HpyCH4V TGCA 3 cut(s) 584, 1208, 1246
HpyF3I CTNAG 1 cut(s) 483
HpySE526I ACGT 3 cut(s) 85, 808, 1308
Hsp92I GRCGYC 1 cut(s) 1308
Hsp92II CATG 5 cut(s) 176, 251, 411, 629, 791
HspAI GCGC 2 cut(s) 510, 754
LmnI GCTCC 2 cut(s) 260, 898
Lsp1109I GCAGC 2 cut(s) 568, 738
LweI GCATC 3 cut(s) 202, 403, 438
MaeI CTAG 4 cut(s) 6, 266, 578, 1236
MaeII ACGT 3 cut(s) 85, 808, 1308
MaeIII GTNAC 2 cut(s) 706, 863
MflI RGATCY 2 cut(s) 486, 946
MhlI GDGCHC 1 cut(s) 1035
MluCI AATT 8 cut(s) 23, 96, 100, 141, 525, 590, 644, 798
MlyI GAGTC 2 cut(s) 1256, 1310
MmeI TCCRAC 2 cut(s) 867, 1310
MspA1I CMGCKG 1 cut(s) 872
MspCI CTTAAG 2 cut(s) 539, 992
MspI CCGG 2 cut(s) 977, 1130
MspR9I CCNGG 1 cut(s) 64
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 1 cut(s) 64
MvnI CGCG 1 cut(s) 510
NlaIII CATG 5 cut(s) 176, 251, 411, 629, 791
NlaIV GGNNCC 2 cut(s) 981, 1091
NmeAIII GCCGAG 2 cut(s) 1014, 1118
NmuCI GTSAC 1 cut(s) 706
NspI RCATGY 1 cut(s) 176
PaeR7I CTCGAG 1 cut(s) 1228
PagI TCATGA 2 cut(s) 625, 787
PcsI WCGNNNNNNNCGW 2 cut(s) 82, 1059
PctI GAATGC 1 cut(s) 548
PfeI GAWTC 5 cut(s) 110, 206, 499, 759, 781
PflMI CCANNNNNTGG 2 cut(s) 248, 619
PkrI GCNGC 3 cut(s) 583, 753, 1338
PleI GAGTC 2 cut(s) 1256, 1310
PpsI GAGTC 2 cut(s) 1256, 1310
PshAI GACNNNNGTC 2 cut(s) 1266, 1307
PshBI ATTAAT 1 cut(s) 99
PsiI TTATAA 1 cut(s) 345
Psp124BI GAGCTC 1 cut(s) 1035
Psp6I CCWGG 1 cut(s) 62
PspEI GGTNACC 1 cut(s) 863
PspFI CCCAGC 2 cut(s) 176, 868
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 981, 1091
PspPI GGNCC 5 cut(s) 352, 889, 979, 997, 1090
PspXI VCTCGAGB 1 cut(s) 1228
PstI CTGCAG 2 cut(s) 586, 1248
PstNI CAGNNNCTG 3 cut(s) 113, 403, 1304
PsuI RGATCY 2 cut(s) 486, 946
PvuII CAGCTG 1 cut(s) 872
RsaI GTAC 1 cut(s) 657
RsaNI GTAC 1 cut(s) 656
SacI GAGCTC 1 cut(s) 1035
SatI GCNGC 3 cut(s) 582, 752, 1337
Sau96I GGNCC 5 cut(s) 352, 889, 979, 997, 1090
SchI GAGTC 2 cut(s) 1256, 1310
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 1 cut(s) 1035
SfaNI GCATC 3 cut(s) 202, 403, 438
SfcI CTRYAG 3 cut(s) 582, 672, 1244
Sfr274I CTCGAG 1 cut(s) 1228
SinI GGWCC 3 cut(s) 889, 979, 997
SlaI CTCGAG 1 cut(s) 1228
SmlI CTYRAG 3 cut(s) 539, 992, 1228
SmoI CTYRAG 3 cut(s) 539, 992, 1228
Sse9I AATT 8 cut(s) 23, 96, 100, 141, 525, 590, 644, 798
SsiI CCGC 3 cut(s) 338, 556, 1336
SspMI CTAG 4 cut(s) 6, 266, 578, 1236
SstI GAGCTC 1 cut(s) 1035
StyD4I CCNGG 1 cut(s) 62
TaaI ACNGT 3 cut(s) 17, 655, 683
TaiI ACGT 3 cut(s) 88, 811, 1311
TaqI TCGA 7 cut(s) 68, 223, 325, 372, 1077, 1187, 1229
TaqII GACCGA 1 cut(s) 1046
TasI AATT 8 cut(s) 23, 96, 100, 141, 525, 590, 644, 798
TatI WGTACW 1 cut(s) 655
TauI GCSGC 1 cut(s) 1339
TfiI GAWTC 5 cut(s) 110, 206, 499, 759, 781
TscAI CASTG 2 cut(s) 22, 688
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 2 cut(s) 581, 751
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 7 cut(s) 108, 377, 583, 776, 804, 1086, 1106
TspRI CASTG 2 cut(s) 22, 688
Van91I CCANNNNNTGG 2 cut(s) 248, 619
Vha464I CTTAAG 2 cut(s) 539, 992
VpaK11BI GGWCC 3 cut(s) 889, 979, 997
VspI ATTAAT 1 cut(s) 99
XapI RAATTY 2 cut(s) 141, 590
XbaI TCTAGA 1 cut(s) 1235
XceI RCATGY 1 cut(s) 176
XhoI CTCGAG 1 cut(s) 1228
XspI CTAG 4 cut(s) 6, 266, 578, 1236
ZraI GACGTC 1 cut(s) 1309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.