Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002528

Physical Location & Seq

Genomic Coordinates Forward (+)

85909004 .. 85914047

Gene Structure 5044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG508500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2637 bp

ATGGCTAGACGGCACAGTGGTGAATCGAGTGATGATGATGTGAGGGGTGGAAGAGATAAGTACCGTCAGCATAGGAGTAAAAGCGAATCGAGGTCAAACAATCATCTTGAGCAGGGTGAGATTGATTCCTCAGATTCTGATAGAGATAATAGAACAAAGAGACAAGGGAGACGGGATGATGAGAAGGAAAGGGAAAGGTCCAGTGAGAGGGTTCCCAGTGATAGACATGGGAGGTGGCGGGGTGATCGGCAAGATAGGGATCGACACACTTCTGATGAAGACGGCAAGGTGGCAGAGAAAGACAGGGATGGGCAAGAAAGGGAAAGGAAAAATGAAAATGGGAACAGACAACGTGAAAGGGATCCCAGTGATAGATATGGAAGGTGGCGGGCTGATCGTCAAGATAGGGATGTACAAACTTCTGATGAAGATGGTGAGCTGGCCGAGAAAGACAGGGGTGGGCAAGAAAGGGAAAGGAAAAATGAAAATGGGAACAGACAACGTGAAAATGGGAATGGTGATAGGGGGAGAGAAAATAGAAGTTCTGAAGATGATGAGCGACTGAAGAGATACCGACATGAGAGTGGACATAGAAGGCGGGAGGATGGTCGTAGAAACAGGGACATGCATTCACGTCACTACTCTGAGCGCAGGGATGAAAGGGAAGAGCGCAGAACTTCAGAACGGAAAAGGGATAGTAGAGATGATGGTGGGCAAAGTAGGCATAGAAACCGAGATGACGATGGTGAGATAAAGAATCGCAGAAATAAGGAGGTGAATGAAAGACGAGAAGACACTGAGCGAGATGATAGGATGCTTGAGAATTCAAAACCTCAAGGACGGTCAACATTGCAAGAGGGAAATCTGAATAATAATGTGGCAAATTTGGGAAAGAGTGGTGGGGTTTATATTCCGCCCTATAAGTTGGCTCGAATGATGAAAGAGGTCGAAGATAAAAGTAGCGTCGAGTATCAACGCTTGACATGGGATGCCCTCCGAAAGAGTATCAATGGGCTTGTGAACAAGGTCAATGCTGCAAACATTAAAAATATAATTCCAGAAATTTTTGCAGAGAATCTCATTCGTGGAAGAGGTCTCTTTTGTCGATCCTGTATGAAGTCACAGATGGCATCTCCAGGATTTACAGATGTCTTTGCTGGCTTGGTTGCTGTTGTTAACACAAAGTTTCCTGAGGTTGGTGAACTTCTGTTGAGAAGAATCGTCTTGCAGCTTAAGAGAGCATTTAAGCGGAACGACAAGCCACAACTACTAGCTGCTGTCAAATTTATTGCGCATCTCGTCAACCAACAAGTGGCTCATGAGATTATAGCATTGGAATTGCTTACTGTGCTGCTGGAGAACCCTACCGATGACAGTGTTGAAGTTGCTGTTGGCTTTGTCACAGAGTGTGGATCGATACTGCAAGACCTTTCACCTAAAGGGCTCCATGGCATCTTTGAGCGCTTTCGTGGAATTCTTCATGAAGGAGAAATTGACAAACGAGTTCAGTTTTTGATCGAAGGCTTATTTGCATTACGAAAAGCAAAATTTCAGGGGCACCCAGCTGTTCGTCCAGAACTGGACCTTGTTGAACAAGAAGACCAGTTAACTCATGAGATTTCTCTTCAAGAGGAGATAAATCCAGAAATTACCCTTGATATTTTCAAGCCTGATCCTGATTTCATTGAGAATGAGAAGCGCTATGAAGATGTGAAGAAAACAATTCTTGGTGAAGACTCTGAAGAGGAAGGTTCTGATGCAGCTTCAGATGGTGAGGATGATGATGATGAGGAGGAGGACGAAGATGATGATGAGGAGGAAGACGAGCAGGAAATGAAAATAAGAGATGAGACGGAGACAAATCTTGTGAATCTTCGAAGGACAATATATCTGACTATCATGTCCAGTGTAGATTTTGAGGAAGCAGGTCATAAGCTCCTTAAGATTAAGCTTGAGCCAGGCCAAGAGATGGAGCTATGTGTCATGCTTTTGGAATGTTGCAGTCAGGAGAGAACCTACCTCCGCTATTATGGTCTCTTGGGACAGCGGTTCTGCATGATCAACAGAATCCACCAGGAAAATTTTGAGAAATGTTTTGTCCAGCAGTATTCAATGATTCACCGGCTTGAAACAAACAAGCTACGTAATGTAGCCAAGTTTTTTGCGCATTTACTGGGAACAGATGCCCTTCCGTGGCATTGCTTAGCCTATATACGGTTAACTGAAGAGGATACCACTTCTTCTTCTCGTATTTTTATCAAGATCCTTTTCCAGGAATTGTCAGAGCATCTTGGTATCCGTCTGCTTAATGAGCGGTTGACTGATCCTGCAATGCAAGACTCTTACGAATCTATTTTCCCAAGGGATAATCCCAAGAACACCCGATTTGCTATTAACTTTTTCACATCCATTGGGCTTGGCGGCATCACTGAGAACCTGCGTGAGTATTTGAAGCACATGCCACGCCTTATTATGCAACAACAAAAAGCAGCGTCAGATGAAGAATCCAACAGTTCTGGTTCATCGGATTCGGACTCAGGGTCGGCTAGTTCTGAGTCGGAATCAGAATCATCAAGCTCTGAAAGTGAAAGTGATCGCGATGAAAGACGCAAGAAGAAACGTAGGAGGAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071006 GO:0071012 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

878

Amino Acids

102.34

Weight (kDa)

5.52

Isoelectric Point (pI)

62.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIF4G	PF02854	334 - 515	1.2e-13	MIF4G domain
MA3	PF02847	625 - 731	1e-30	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80930
fragaria_vesca	FvH4_3g01450 FvH4_3g43230 FvH4_3g43240 FvH4_3g43240
malus_domestica	MD03G1023500.v1.1 MD11G1028600.v1.1
prunus_persica	Prupe.6G022700_v2.0.a1 Prupe.6G022700_v2.0.a1
pyrus_communis	pycom03g02010 pycom11g02210
rosa_chinensis	RchiOBHm_Chr5g0002291 RchiOBHm_Chr5g0077281 RchiOBHm_Chr5g0077291
rosa_laevigata	RLG00000031014 RLG00000036681 RLG00000036682
rosa_multiflora	Rmu_co8446135.1_g000001 Rmu_sc0000433.1_g000042 Rmu_sc0001492.1_g000008 Rmu_sc0005576.1_g000001 Rmu_sc0006137.1_g000009 Rmu_sc0008383.1_g000001 Rmu_sc0013155.1_g000012 Rmu_ssc0000410.1_g000040
rosa_roxburghii	Rroxscaffold_1G00004680 Rroxscaffold_1G00073650
rosa_rugosa	Rorug04G0394900 Rorug05G0453500
rosa_samantha	Rh5AG017700 Rh5AG508400 Rh5AG508500 Rh5BG020300 Rh5BG529600 Rh5CG019100 Rh5CG019400 Rh5CG554100 Rh5DG018300 Rh5DG542200
rosa_wichuraiana	Rw5G046900 Rw5G046910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1900
Acc16I	TGCGCA	2 cut(s)	1293, 2166
Acc36I	ACCTGC	2 cut(s)	1916, 2445
AccB1I	GGYRCC	1 cut(s)	1557
AccB7I	CCANNNNNTGG	2 cut(s)	1312, 1969
AccBSI	CCGCTC	1 cut(s)	2314
AccII	CGCG	1 cut(s)	2598
AciI	CCGC	9 cut(s)	238, 388, 598, 914, 1249, 2023, 2047, 2314, 2421
AclWI	GGATC	8 cut(s)	267, 356, 369, 1101, 1420, 1667, 2257, 2318
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	7 cut(s)	823, 883, 1062, 1283, 1473, 1547, 2080
AcuI	CTGAAG	6 cut(s)	567, 584, 663, 1749, 1761, 2244
AdeI	CACNNNGTG	1 cut(s)	1407
AfaI	GTAC	2 cut(s)	62, 414
AfeI	AGCGCT	2 cut(s)	1463, 1700
AfiI	CCNNNNNNNGG	7 cut(s)	207, 1196, 1312, 1969, 2193, 2214, 2272
AflII	CTTAAG	2 cut(s)	1232, 1940
AgsI	TTSAA	8 cut(s)	828, 1382, 1592, 1628, 1666, 2112, 2129, 2452
AhdI	GACNNNNNGTC	1 cut(s)	2539
AjiI	CACGTC	1 cut(s)	635
AjnI	CCWGG	4 cut(s)	1135, 1957, 2073, 2271
AjuI	GAANNNNNNNTTGG	2 cut(s)	1374, 1406
AleI	CACNNNNGTG	1 cut(s)	18
Alw26I	GTCTC	6 cut(s)	154, 163, 1100, 1844, 1850, 2039
AlwI	GGATC	8 cut(s)	267, 356, 369, 1101, 1420, 1667, 2257, 2318
AlwNI	CAGNNNCTG	1 cut(s)	137
Aor51HI	AGCGCT	2 cut(s)	1463, 1700
AoxI	GGCC	2 cut(s)	441, 1960
ApeKI	GCWGC	6 cut(s)	1034, 1228, 1274, 1351, 1760, 2489
ApoI	RAATTY	7 cut(s)	823, 883, 1062, 1283, 1473, 1547, 2080
AspLEI	GCGC	6 cut(s)	651, 672, 1294, 1464, 1701, 2167
AspS9I	GGNCC	2 cut(s)	198, 1582
AsuII	TTCGAA	1 cut(s)	1876
AvaII	GGWCC	2 cut(s)	198, 1582
AxyI	CCTNAGG	1 cut(s)	1191
BaeGI	GKGCMC	1 cut(s)	1560
BamHI	GGATCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	1557
BanII	GRGCYC	1 cut(s)	1446
BbsI	GAAGAC	5 cut(s)	285, 798, 1605, 1740, 1827
BbvI	GCAGC	6 cut(s)	1021, 1240, 1261, 1338, 1772, 2501
BccI	CCATC	8 cut(s)	302, 425, 599, 701, 737, 1120, 1763, 1963
BceAI	ACGGC	2 cut(s)	26, 298
BciT130I	CCWGG	4 cut(s)	1137, 1959, 2075, 2273
BciVI	GTATCC	2 cut(s)	2224, 2306
BclI	TGATCA	1 cut(s)	2058
BcoDI	GTCTC	6 cut(s)	154, 163, 1100, 1844, 1850, 2039
BfaI	CTAG	3 cut(s)	6, 1271, 2547
BfoI	RGCGCY	2 cut(s)	1465, 1702
BfrI	CTTAAG	2 cut(s)	1232, 1940
BfuAI	ACCTGC	2 cut(s)	1916, 2445
BfuI	GTATCC	2 cut(s)	2224, 2306
BisI	GCNGC	7 cut(s)	1035, 1229, 1275, 1352, 1761, 2422, 2490
BlpI	GCTNAGC	1 cut(s)	2203
BlsI	GCNGC	7 cut(s)	1036, 1230, 1276, 1353, 1762, 2423, 2491
Bme1390I	CCNGG	4 cut(s)	1137, 1959, 2075, 2273
Bme18I	GGWCC	2 cut(s)	198, 1582
BmeRI	GACNNNNNGTC	1 cut(s)	2539
BmgBI	CACGTC	1 cut(s)	635
BmgT120I	GGNCC	2 cut(s)	198, 1582
BmiI	GGNNCC	4 cut(s)	213, 363, 1445, 1559
BmrFI	CCNGG	4 cut(s)	1137, 1959, 2075, 2273
BmrI	ACTGGG	3 cut(s)	210, 360, 2183
BmsI	GCATC	9 cut(s)	804, 979, 1139, 1303, 1461, 1747, 2173, 2296, 2433
BmuI	ACTGGG	3 cut(s)	210, 360, 2183
BpiI	GAAGAC	5 cut(s)	285, 798, 1605, 1740, 1827
BpmI	CTGGAG	2 cut(s)	1119, 1376
Bpu1102I	GCTNAGC	1 cut(s)	2203
Bpu14I	TTCGAA	1 cut(s)	1876
BpuEI	CTTGAG	4 cut(s)	128, 819, 839, 1973
Bsa29I	ATCGAT	1 cut(s)	1415
BsaAI	YACGTR	1 cut(s)	2144
BsaBI	GATNNNNATC	1 cut(s)	258
BsaI	GGTCTC	2 cut(s)	1100, 2039
BsaJI	CCNNGG	3 cut(s)	1447, 2192, 2360
Bsc4I	CCNNNNNNNGG	7 cut(s)	207, 1196, 1312, 1969, 2193, 2214, 2272
Bse118I	RCCGGY	1 cut(s)	2121
Bse1I	ACTGG	7 cut(s)	201, 216, 366, 1584, 1603, 1905, 2178
Bse21I	CCTNAGG	1 cut(s)	1191
Bse3DI	GCAATG	3 cut(s)	848, 2197, 2337
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	4 cut(s)	1137, 1959, 2075, 2273
BseCI	ATCGAT	1 cut(s)	1415
BseDI	CCNNGG	3 cut(s)	1447, 2192, 2360
BseGI	GGATG	9 cut(s)	181, 313, 415, 610, 661, 819, 994, 1783, 2405
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	7 cut(s)	207, 1196, 1312, 1969, 2193, 2214, 2272
BseMI	GCAATG	3 cut(s)	848, 2197, 2337
BseMII	CTCAG	7 cut(s)	144, 636, 789, 1182, 2421, 2544, 2550
BseNI	ACTGG	7 cut(s)	201, 216, 366, 1584, 1603, 1905, 2178
BseRI	GAGGAG	4 cut(s)	1646, 1805, 1808, 1829
BseSI	GKGCMC	1 cut(s)	1560
BseXI	GCAGC	6 cut(s)	1021, 1240, 1261, 1338, 1772, 2501
BseYI	CCCAGC	1 cut(s)	1561
Bsh1236I	CGCG	1 cut(s)	2598
BshFI	GGCC	2 cut(s)	443, 1962
BshNI	GGYRCC	1 cut(s)	1557
BshVI	ATCGAT	1 cut(s)	1415
BsiSI	CCGG	1 cut(s)	2122
BslFI	GGGAC	2 cut(s)	635, 2055
BslI	CCNNNNNNNGG	7 cut(s)	207, 1196, 1312, 1969, 2193, 2214, 2272
BsmAI	GTCTC	6 cut(s)	154, 163, 1100, 1844, 1850, 2039
BsmBI	CGTCTC	2 cut(s)	163, 1844
BsmFI	GGGAC	2 cut(s)	635, 2055
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	2 cut(s)	443, 1962
Bso31I	GGTCTC	2 cut(s)	1100, 2039
Bsp119I	TTCGAA	1 cut(s)	1876
Bsp1286I	GDGCHC	2 cut(s)	1446, 1560
Bsp1407I	TGTACA	1 cut(s)	412
Bsp1720I	GCTNAGC	1 cut(s)	2203
Bsp19I	CCATGG	1 cut(s)	1447
Bsp68I	TCGCGA	1 cut(s)	2598
BspACI	CCGC	9 cut(s)	238, 388, 598, 914, 1249, 2023, 2047, 2314, 2421
BspANI	GGCC	2 cut(s)	443, 1962
BspCNI	CTCAG	7 cut(s)	143, 637, 790, 1183, 2422, 2545, 2549
BspDI	ATCGAT	1 cut(s)	1415
BspFNI	CGCG	1 cut(s)	2598
BspHI	TCATGA	3 cut(s)	1318, 1480, 1612
BspLI	GGNNCC	4 cut(s)	213, 363, 1445, 1559
BspMI	ACCTGC	2 cut(s)	1916, 2445
BspPI	GGATC	8 cut(s)	267, 356, 369, 1101, 1420, 1667, 2257, 2318
BspQI	GCTCTTC	1 cut(s)	660
BspT104I	TTCGAA	1 cut(s)	1876
BspT107I	GGYRCC	1 cut(s)	1557
BspTI	CTTAAG	2 cut(s)	1232, 1940
BspTNI	GGTCTC	2 cut(s)	1100, 2039
BsrBI	CCGCTC	1 cut(s)	2314
BsrDI	GCAATG	3 cut(s)	848, 2197, 2337
BsrFI	RCCGGY	1 cut(s)	2121
BsrGI	TGTACA	1 cut(s)	412
BsrI	ACTGG	7 cut(s)	201, 216, 366, 1584, 1603, 1905, 2178
BssAI	RCCGGY	1 cut(s)	2121
BssECI	CCNNGG	3 cut(s)	1447, 2192, 2360
BssT1I	CCWWGG	2 cut(s)	1447, 2360
Bst2UI	CCWGG	4 cut(s)	1137, 1959, 2075, 2273
Bst4CI	ACNGT	7 cut(s)	17, 65, 843, 1348, 1376, 2217, 2513
Bst6I	CTCTTC	7 cut(s)	46, 560, 660, 1084, 1629, 1737, 2220
BstAFI	CTTAAG	2 cut(s)	1232, 1940
BstAUI	TGTACA	1 cut(s)	412
BstBAI	YACGTR	1 cut(s)	2144
BstBI	TTCGAA	1 cut(s)	1876
BstC8I	GCNNGC	3 cut(s)	390, 441, 1159
BstDEI	CTNAG	8 cut(s)	130, 645, 798, 1191, 2203, 2430, 2536, 2553
BstDSI	CCRYGG	2 cut(s)	1447, 2192
BstENI	CCTNNNNNAGG	1 cut(s)	2270
BstF5I	GGATG	9 cut(s)	181, 313, 415, 610, 661, 819, 994, 1783, 2405
BstFNI	CGCG	1 cut(s)	2598
BstH2I	RGCGCY	2 cut(s)	1465, 1702
BstHHI	GCGC	6 cut(s)	651, 672, 1294, 1464, 1701, 2167
BstMAI	GTCTC	6 cut(s)	154, 163, 1100, 1844, 1850, 2039
BstMWI	GCNNNNNNNGC	3 cut(s)	721, 1348, 2311
BstNI	CCWGG	4 cut(s)	1137, 1959, 2075, 2273
BstNSI	RCATGY	2 cut(s)	628, 2461
BstSCI	CCNGG	4 cut(s)	1135, 1957, 2073, 2271
BstSLI	GKGCMC	1 cut(s)	1560
BstSNI	TACGTA	1 cut(s)	2144
BstUI	CGCG	1 cut(s)	2598
BstV1I	GCAGC	6 cut(s)	1021, 1240, 1261, 1338, 1772, 2501
BstV2I	GAAGAC	5 cut(s)	285, 798, 1605, 1740, 1827
BstX2I	RGATCY	2 cut(s)	361, 2262
BstYI	RGATCY	2 cut(s)	361, 2262
Bsu15I	ATCGAT	1 cut(s)	1415
Bsu36I	CCTNAGG	1 cut(s)	1191
BsuI	GTATCC	2 cut(s)	2224, 2306
BsuRI	GGCC	2 cut(s)	443, 1962
BsuTUI	ATCGAT	1 cut(s)	1415
BtgI	CCRYGG	2 cut(s)	1447, 2192
BtgZI	GCGATG	1 cut(s)	2613
BtrI	CACGTC	1 cut(s)	635
BtsCI	GGATG	9 cut(s)	181, 313, 415, 610, 661, 819, 994, 1783, 2405
BtsIMutI	CAGTG	8 cut(s)	22, 208, 223, 373, 795, 1381, 1912, 2427
BtuMI	TCGCGA	1 cut(s)	2598
BveI	ACCTGC	2 cut(s)	1916, 2445
Cac8I	GCNNGC	3 cut(s)	390, 441, 1159
CaiI	CAGNNNCTG	1 cut(s)	137
CciI	TCATGA	3 cut(s)	1318, 1480, 1612
CfoI	GCGC	6 cut(s)	651, 672, 1294, 1464, 1701, 2167
Cfr10I	RCCGGY	1 cut(s)	2121
Cfr13I	GGNCC	2 cut(s)	198, 1582
ClaI	ATCGAT	1 cut(s)	1415
CseI	GACGC	3 cut(s)	952, 2481, 2616
Csp6I	GTAC	2 cut(s)	61, 413
CviQI	GTAC	2 cut(s)	61, 413
DdeI	CTNAG	8 cut(s)	130, 645, 798, 1191, 2203, 2430, 2536, 2553
DraIII	CACNNNGTG	1 cut(s)	1407
DrdI	GACNNNNNNGTC	1 cut(s)	1900
DriI	GACNNNNNGTC	1 cut(s)	2539
DseDI	GACNNNNNNGTC	1 cut(s)	1900
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	7 cut(s)	46, 560, 660, 1084, 1629, 1737, 2220
Eam1105I	GACNNNNNGTC	1 cut(s)	2539
EarI	CTCTTC	7 cut(s)	46, 560, 660, 1084, 1629, 1737, 2220
EciI	GGCGGA	1 cut(s)	903
Eco105I	TACGTA	1 cut(s)	2144
Eco130I	CCWWGG	2 cut(s)	1447, 2360
Eco24I	GRGCYC	1 cut(s)	1446
Eco31I	GGTCTC	2 cut(s)	1100, 2039
Eco47I	GGWCC	2 cut(s)	198, 1582
Eco47III	AGCGCT	2 cut(s)	1463, 1700
Eco57I	CTGAAG	6 cut(s)	567, 584, 663, 1749, 1761, 2244
Eco81I	CCTNAGG	1 cut(s)	1191
EcoNI	CCTNNNNNAGG	1 cut(s)	2270
EcoRI	GAATTC	2 cut(s)	823, 1473
EcoRII	CCWGG	4 cut(s)	1135, 1957, 2073, 2271
EcoT14I	CCWWGG	2 cut(s)	1447, 2360
EcoT22I	ATGCAT	1 cut(s)	630
EcoT38I	GRGCYC	1 cut(s)	1446
ErhI	CCWWGG	2 cut(s)	1447, 2360
Esp3I	CGTCTC	2 cut(s)	163, 1844
FaqI	GGGAC	2 cut(s)	635, 2055
FauI	CCCGC	3 cut(s)	231, 381, 591
FbaI	TGATCA	1 cut(s)	2058
Fnu4HI	GCNGC	7 cut(s)	1035, 1229, 1275, 1352, 1761, 2422, 2490
FokI	GGATG	9 cut(s)	188, 320, 422, 617, 668, 826, 1001, 1790, 2392
FriOI	GRGCYC	1 cut(s)	1446
Fsp4HI	GCNGC	7 cut(s)	1035, 1229, 1275, 1352, 1761, 2422, 2490
FspBI	CTAG	3 cut(s)	6, 1271, 2547
FspI	TGCGCA	2 cut(s)	1293, 2166
GlaI	GCGC	6 cut(s)	650, 671, 1293, 1463, 1700, 2166
GluI	GCNGC	7 cut(s)	1035, 1229, 1275, 1352, 1761, 2422, 2490
GsaI	CCCAGC	1 cut(s)	1565
GsuI	CTGGAG	2 cut(s)	1119, 1376
HaeII	RGCGCY	2 cut(s)	1465, 1702
HaeIII	GGCC	2 cut(s)	443, 1962
HapII	CCGG	1 cut(s)	2122
HgaI	GACGC	3 cut(s)	952, 2481, 2616
HhaI	GCGC	6 cut(s)	651, 672, 1294, 1464, 1701, 2167
Hin6I	GCGC	6 cut(s)	649, 670, 1292, 1462, 1699, 2165
HinP1I	GCGC	6 cut(s)	649, 670, 1292, 1462, 1699, 2165
HincII	GTYRAC	6 cut(s)	846, 1177, 1303, 1608, 2220, 2319
HindII	GTYRAC	6 cut(s)	846, 1177, 1303, 1608, 2220, 2319
HindIII	AAGCTT	1 cut(s)	1949
HpaI	GTTAAC	3 cut(s)	1177, 1608, 2220
HpaII	CCGG	1 cut(s)	2122
Hpy166II	GTNNAC	9 cut(s)	587, 846, 1021, 1177, 1202, 1303, 1608, 2220, 2319
Hpy8I	GTNNAC	9 cut(s)	587, 846, 1021, 1177, 1202, 1303, 1608, 2220, 2319
Hpy99I	CGWCG	1 cut(s)	968
HpyAV	CCTTC	8 cut(s)	178, 375, 588, 1478, 1514, 1742, 1872, 2198
HpyCH4III	ACNGT	7 cut(s)	17, 65, 843, 1348, 1376, 2217, 2513
HpyCH4IV	ACGT	5 cut(s)	352, 502, 634, 2143, 2620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	721, 1348, 2311
HpyF3I	CTNAG	8 cut(s)	130, 645, 798, 1191, 2203, 2430, 2536, 2553
HpySE526I	ACGT	5 cut(s)	352, 502, 634, 2143, 2620
HspAI	GCGC	6 cut(s)	649, 670, 1292, 1462, 1699, 2165
Ksp22I	TGATCA	1 cut(s)	2058
KspAI	GTTAAC	3 cut(s)	1177, 1608, 2220
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	3 cut(s)	1449, 1941, 1972
Lsp1109I	GCAGC	6 cut(s)	1021, 1240, 1261, 1338, 1772, 2501
LweI	GCATC	9 cut(s)	804, 979, 1139, 1303, 1461, 1747, 2173, 2296, 2433
MaeI	CTAG	3 cut(s)	6, 1271, 2547
MaeII	ACGT	5 cut(s)	352, 502, 634, 2143, 2620
MaeIII	GTNAC	3 cut(s)	635, 1119, 1399
MbiI	CCGCTC	1 cut(s)	2314
MflI	RGATCY	2 cut(s)	361, 2262
MhlI	GDGCHC	2 cut(s)	1446, 1560
MlyI	GAGTC	4 cut(s)	1730, 2333, 2528, 2564
MmeI	TCCRAC	2 cut(s)	2532, 2538
Mph1103I	ATGCAT	1 cut(s)	630
MslI	CAYNNNNRTG	2 cut(s)	18, 582
MspA1I	CMGCKG	2 cut(s)	1565, 2047
MspCI	CTTAAG	2 cut(s)	1232, 1940
MspI	CCGG	1 cut(s)	2122
MspR9I	CCNGG	4 cut(s)	1137, 1959, 2075, 2273
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	4 cut(s)	1137, 1959, 2075, 2273
MvnI	CGCG	1 cut(s)	2598
MwoI	GCNNNNNNNGC	3 cut(s)	721, 1348, 2311
NcoI	CCATGG	1 cut(s)	1447
NlaIV	GGNNCC	4 cut(s)	213, 363, 1445, 1559
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	3 cut(s)	635, 1119, 1399
NruI	TCGCGA	1 cut(s)	2598
NsbI	TGCGCA	2 cut(s)	1293, 2166
NsiI	ATGCAT	1 cut(s)	630
NspI	RCATGY	2 cut(s)	628, 2461
NspV	TTCGAA	1 cut(s)	1876
OliI	CACNNNNGTG	1 cut(s)	18
PagI	TCATGA	3 cut(s)	1318, 1480, 1612
PciSI	GCTCTTC	1 cut(s)	660
PctI	GAATGC	1 cut(s)	628
PflMI	CCANNNNNTGG	2 cut(s)	1312, 1969
PfoI	TCCNGGA	2 cut(s)	1135, 2271
PkrI	GCNGC	7 cut(s)	1036, 1230, 1276, 1353, 1762, 2423, 2491
PleI	GAGTC	4 cut(s)	1730, 2333, 2528, 2563
PpsI	GAGTC	4 cut(s)	1730, 2333, 2528, 2563
Ppu21I	YACGTR	1 cut(s)	2144
Psp6I	CCWGG	4 cut(s)	1135, 1957, 2073, 2271
PspFI	CCCAGC	1 cut(s)	1561
PspGI	CCWGG	4 cut(s)	1135, 1957, 2073, 2271
PspN4I	GGNNCC	4 cut(s)	213, 363, 1445, 1559
PspPI	GGNCC	2 cut(s)	198, 1582
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	2 cut(s)	361, 2262
PvuII	CAGCTG	1 cut(s)	1565
RruI	TCGCGA	1 cut(s)	2598
RsaI	GTAC	2 cut(s)	62, 414
RsaNI	GTAC	2 cut(s)	61, 413
RseI	CAYNNNNRTG	2 cut(s)	18, 582
SapI	GCTCTTC	1 cut(s)	660
SatI	GCNGC	7 cut(s)	1035, 1229, 1275, 1352, 1761, 2422, 2490
Sau96I	GGNCC	2 cut(s)	198, 1582
SchI	GAGTC	4 cut(s)	1730, 2333, 2528, 2564
ScrFI	CCNGG	4 cut(s)	1137, 1959, 2075, 2273
SduI	GDGCHC	2 cut(s)	1446, 1560
SfaNI	GCATC	9 cut(s)	804, 979, 1139, 1303, 1461, 1747, 2173, 2296, 2433
SfuI	TTCGAA	1 cut(s)	1876
SinI	GGWCC	2 cut(s)	198, 1582
SmiMI	CAYNNNNRTG	2 cut(s)	18, 582
SmlI	CTYRAG	6 cut(s)	107, 818, 834, 1232, 1940, 1952
SmoI	CTYRAG	6 cut(s)	107, 818, 834, 1232, 1940, 1952
SnaBI	TACGTA	1 cut(s)	2144
SsiI	CCGC	9 cut(s)	238, 388, 598, 914, 1249, 2023, 2047, 2314, 2421
SspMI	CTAG	3 cut(s)	6, 1271, 2547
StyD4I	CCNGG	4 cut(s)	1135, 1957, 2073, 2271
StyI	CCWWGG	2 cut(s)	1447, 2360
TaaI	ACNGT	7 cut(s)	17, 65, 843, 1348, 1376, 2217, 2513
TaiI	ACGT	5 cut(s)	355, 505, 637, 2146, 2623
TatI	WGTACW	1 cut(s)	412
TauI	GCSGC	1 cut(s)	2424
TscAI	CASTG	8 cut(s)	22, 208, 223, 373, 802, 1381, 1912, 2434
TseFI	GTSAC	3 cut(s)	635, 1119, 1399
TseI	GCWGC	6 cut(s)	1034, 1228, 1274, 1351, 1760, 2489
Tsp45I	GTSAC	3 cut(s)	635, 1119, 1399
TspGWI	ACGGA	4 cut(s)	700, 1868, 2181, 2288
TspRI	CASTG	8 cut(s)	22, 208, 223, 373, 802, 1381, 1912, 2434
Van91I	CCANNNNNTGG	2 cut(s)	1312, 1969
Vha464I	CTTAAG	2 cut(s)	1232, 1940
VpaK11BI	GGWCC	2 cut(s)	198, 1582
XagI	CCTNNNNNAGG	1 cut(s)	2270
XapI	RAATTY	7 cut(s)	823, 883, 1062, 1283, 1473, 1547, 2080
XceI	RCATGY	2 cut(s)	628, 2461
XspI	CTAG	3 cut(s)	6, 1271, 2547
Zsp2I	ATGCAT	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.