Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002528

Physical Location & Seq

Genomic Coordinates Reverse (-)

62691325 .. 62691730

Gene Structure 406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0453500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATGAATATGGCAAACTTGAATGCTTCAGCTAAGGATGATGATCCTAATTTTCTGTATGTGAAGCGTAGGATGGCTGATGGTAAACACCACACTCTGGCGAAGCTTGATCCTCGTGAATTCGATGGAGGAAAGACTCTGCATGCGGCGGCCTTGCGACTCTGTAGGTCTGCATTTGCAGAGAACCAGACCGGCGCTGCTGTGGTCGTGTCGTTGAAGAAGCCACTCGGCGGGTTGGAAATCACTTGGTTTTATAACGACGAGCTGACTATTTCAATGCTGATGACTATCTGTAACTCGGCATATGAACCTGAGTTTGATATGGAAGAGGAGGATGATGAAGATGAGGTGGGAAACAAAGGTGGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071006 GO:0071012 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

123

Amino Acids

13.63

Weight (kDa)

4.69

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80930
fragaria_vesca	FvH4_3g01450 FvH4_3g43230 FvH4_3g43240 FvH4_3g43240
malus_domestica	MD03G1023500.v1.1 MD11G1028600.v1.1
prunus_persica	Prupe.6G022700_v2.0.a1 Prupe.6G022700_v2.0.a1
pyrus_communis	pycom03g02010 pycom11g02210
rosa_chinensis	RchiOBHm_Chr5g0002291 RchiOBHm_Chr5g0077281 RchiOBHm_Chr5g0077291
rosa_laevigata	RLG00000031014 RLG00000036681 RLG00000036682
rosa_multiflora	Rmu_co8446135.1_g000001 Rmu_sc0000433.1_g000042 Rmu_sc0001492.1_g000008 Rmu_sc0005576.1_g000001 Rmu_sc0006137.1_g000009 Rmu_sc0008383.1_g000001 Rmu_sc0013155.1_g000012 Rmu_ssc0000410.1_g000040
rosa_roxburghii	Rroxscaffold_1G00004680 Rroxscaffold_1G00073650
rosa_rugosa	Rorug04G0394900 Rorug05G0453500
rosa_samantha	Rh5AG017700 Rh5AG508400 Rh5AG508500 Rh5BG020300 Rh5BG529600 Rh5CG019100 Rh5CG019400 Rh5CG554100 Rh5DG018300 Rh5DG542200
rosa_wichuraiana	Rw5G046900 Rw5G046910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	97
AciI	CCGC	3 cut(s)	146, 149, 231
AclWI	GGATC	2 cut(s)	38, 104
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	97, 230
AgsI	TTSAA	3 cut(s)	22, 217, 276
AluBI	AGCT	3 cut(s)	32, 106, 265
AluI	AGCT	3 cut(s)	32, 106, 265
AlwI	GGATC	2 cut(s)	38, 104
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	197
BauI	CACGAG	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	3 cut(s)	67, 74, 119
BfmI	CTRYAG	1 cut(s)	163
BfoI	RGCGCY	1 cut(s)	198
BisI	GCNGC	3 cut(s)	147, 150, 198
BlsI	GCNGC	3 cut(s)	148, 151, 199
Bpu10I	CCTNAGC	1 cut(s)	33
BsaBI	GATNNNNATC	2 cut(s)	42, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 230
Bse118I	RCCGGY	1 cut(s)	191
Bse8I	GATNNNNATC	2 cut(s)	42, 287
BseGI	GGATG	3 cut(s)	43, 78, 340
BseJI	GATNNNNATC	2 cut(s)	42, 287
BseLI	CCNNNNNNNGG	2 cut(s)	97, 230
BseMII	CTCAG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	2 cut(s)	97, 230
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	43, 109
BspACI	CCGC	3 cut(s)	146, 149, 231
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	304
BspPI	GGATC	2 cut(s)	38, 104
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssMI	GATC	2 cut(s)	43, 109
BssSI	CACGAG	1 cut(s)	114
Bst2BI	CACGAG	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	33, 312
BstF5I	GGATG	3 cut(s)	43, 78, 340
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	2 cut(s)	46, 112
BstMBI	GATC	2 cut(s)	43, 109
BstNSI	RCATGY	1 cut(s)	146
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	43, 78, 340
Cac8I	GCNNGC	1 cut(s)	144
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	191
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	7 cut(s)	32, 77, 106, 152, 223, 265, 368
CviKI_1	RGCY	7 cut(s)	32, 77, 106, 152, 223, 265, 368
DdeI	CTNAG	2 cut(s)	33, 312
DpnI	GATC	2 cut(s)	45, 111
DpnII	GATC	2 cut(s)	43, 109
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	12
EcoRI	GAATTC	1 cut(s)	119
FaeI	CATG	1 cut(s)	146
FaiI	YATR	7 cut(s)	11, 60, 144, 255, 304, 306, 323
FatI	CATG	1 cut(s)	142
FauI	CCCGC	1 cut(s)	224
FauNDI	CATATG	1 cut(s)	304
Fnu4HI	GCNGC	3 cut(s)	147, 150, 198
FokI	GGATG	3 cut(s)	50, 85, 347
Fsp4HI	GCNGC	3 cut(s)	147, 150, 198
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	3 cut(s)	147, 150, 198
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	146
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	2 cut(s)	136, 159
HpaII	CCGG	1 cut(s)	192
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	86
Hpy99I	CGWCG	1 cut(s)	263
HpyCH4V	TGCA	3 cut(s)	142, 173, 179
HpyF3I	CTNAG	2 cut(s)	33, 312
Hsp92II	CATG	1 cut(s)	146
HspAI	GCGC	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	43, 109
LpnPI	CCDG	4 cut(s)	83, 200, 205, 324
Lsp1109I	GCAGC	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	2 cut(s)	45, 111
MboI	GATC	2 cut(s)	43, 109
MboII	GAAGA	3 cut(s)	229, 338, 353
MluCI	AATT	2 cut(s)	49, 119
MlyI	GAGTC	2 cut(s)	130, 153
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	5 cut(s)	122, 123, 322, 325, 340
MspI	CCGG	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	28
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	2 cut(s)	43, 109
NlaIII	CATG	1 cut(s)	146
NmeAIII	GCCGAG	2 cut(s)	207, 278
NspI	RCATGY	1 cut(s)	146
PaeI	GCATGC	1 cut(s)	146
PctI	GAATGC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	97
PkrI	GCNGC	3 cut(s)	148, 151, 199
PleI	GAGTC	2 cut(s)	130, 153
PpsI	GAGTC	2 cut(s)	130, 153
PsiI	TTATAA	1 cut(s)	255
SatI	GCNGC	3 cut(s)	147, 150, 198
Sau3AI	GATC	2 cut(s)	43, 109
SchI	GAGTC	2 cut(s)	130, 153
SetI	ASST	7 cut(s)	34, 108, 170, 267, 313, 351, 364
SfcI	CTRYAG	1 cut(s)	163
SphI	GCATGC	1 cut(s)	146
Sse9I	AATT	2 cut(s)	49, 119
SsiI	CCGC	3 cut(s)	146, 149, 231
TaqI	TCGA	1 cut(s)	123
TasI	AATT	2 cut(s)	49, 119
TauI	GCSGC	2 cut(s)	149, 152
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	3 cut(s)	20, 321, 354
Van91I	CCANNNNNTGG	1 cut(s)	97
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.