Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006137.1

Orthogroup ID

OG0002528

Physical Location & Seq

Genomic Coordinates Forward (+)

61682 .. 62181

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006137.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 500 bp

atgatccatcggtttgaaacaaacaagattcgcaatgttgcttcattttacgcccacttactctcaacagatgctcttccatggcattgcatagcctatatgcgactaactgaaaaggacaccacttcgtcttctaggatttttgtcaagatccttttccaggagttgtcaaagcagcttggcactcgtatgcttaatgagcggctccatgatccggccatgcaagaaagtactgagtctattttgccgagggataatccgaggaactcccggttcgccataaattttttcacacaaatagggcttggtcctctcactgagaacctgcgtgagttctatgattacctgtcacagcttattaggcaacaacaaaaagcagtgtcggaggaagaatctgagagctctggttcatcggatttggaatcggaatcatcaagctctgatgatgaaagcgaaagtgatggggatgaaagacgcaagaataaacgtaggaggagaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071006 GO:0071012 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

166

Amino Acids

19.35

Weight (kDa)

5.86

Isoelectric Point (pI)

81.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80930
fragaria_vesca	FvH4_3g01450 FvH4_3g43230 FvH4_3g43240 FvH4_3g43240
malus_domestica	MD03G1023500.v1.1 MD11G1028600.v1.1
prunus_persica	Prupe.6G022700_v2.0.a1 Prupe.6G022700_v2.0.a1
pyrus_communis	pycom03g02010 pycom11g02210
rosa_chinensis	RchiOBHm_Chr5g0002291 RchiOBHm_Chr5g0077281 RchiOBHm_Chr5g0077291
rosa_laevigata	RLG00000031014 RLG00000036681 RLG00000036682
rosa_multiflora	Rmu_co8446135.1_g000001 Rmu_sc0000433.1_g000042 Rmu_sc0001492.1_g000008 Rmu_sc0005576.1_g000001 Rmu_sc0006137.1_g000009 Rmu_sc0008383.1_g000001 Rmu_sc0013155.1_g000012 Rmu_ssc0000410.1_g000040
rosa_roxburghii	Rroxscaffold_1G00004680 Rroxscaffold_1G00073650
rosa_rugosa	Rorug04G0394900 Rorug05G0453500
rosa_samantha	Rh5AG017700 Rh5AG508400 Rh5AG508500 Rh5BG020300 Rh5BG529600 Rh5CG019100 Rh5CG019400 Rh5CG554100 Rh5DG018300 Rh5DG542200
rosa_wichuraiana	Rw5G046900 Rw5G046910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	333
AccBSI	CCGCTC	1 cut(s)	202
AciI	CCGC	1 cut(s)	202
AclWI	GGATC	2 cut(s)	145, 206
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	2 cut(s)	160, 214
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	4 cut(s)	178, 355, 402, 438
AluI	AGCT	4 cut(s)	178, 355, 402, 438
Alw21I	GWGCWC	1 cut(s)	404
AlwI	GGATC	2 cut(s)	145, 206
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	175
ApoI	RAATTY	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	2 cut(s)	15, 455
BciT130I	CCWGG	1 cut(s)	161
BcnI	CCSGG	1 cut(s)	271
BfaI	CTAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	333
BisI	GCNGC	2 cut(s)	176, 203
BlsI	GCNGC	2 cut(s)	177, 204
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	161, 271
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	2 cut(s)	161, 271
BmsI	GCATC	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	271
BsaJI	CCNNGG	3 cut(s)	80, 248, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 214
Bse3DI	GCAATG	2 cut(s)	40, 85
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	3 cut(s)	80, 248, 260
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	2 cut(s)	160, 214
BseMI	GCAATG	2 cut(s)	40, 85
BseMII	CTCAG	3 cut(s)	225, 309, 387
BseXI	GCAGC	1 cut(s)	187
BshFI	GGCC	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	404
BsiSI	CCGG	2 cut(s)	215, 271
BslI	CCNNNNNNNGG	2 cut(s)	160, 214
BsnI	GGCC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp143I	GATC	3 cut(s)	3, 150, 211
Bsp19I	CCATGG	1 cut(s)	80
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	3 cut(s)	226, 310, 388
BspLI	GGNNCC	1 cut(s)	206
BspMI	ACCTGC	1 cut(s)	333
BspPI	GGATC	2 cut(s)	145, 206
BspQI	GCTCTTC	1 cut(s)	81
BsrBI	CCGCTC	1 cut(s)	202
BsrDI	GCAATG	2 cut(s)	40, 85
BssECI	CCNNGG	3 cut(s)	80, 248, 260
BssMI	GATC	3 cut(s)	3, 150, 211
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	81
BstDEI	CTNAG	3 cut(s)	234, 318, 396
BstDSI	CCRYGG	1 cut(s)	80
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	472
BstKTI	GATC	3 cut(s)	6, 153, 214
BstMBI	GATC	3 cut(s)	3, 150, 211
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 361
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	2 cut(s)	159, 269
BstV1I	GCAGC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	218
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	2 cut(s)	315, 384
BveI	ACCTGC	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	308
CseI	GACGC	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	3 cut(s)	81, 209, 220
CviJI	RGCY	8 cut(s)	95, 178, 205, 218, 304, 355, 402, 438
CviKI_1	RGCY	8 cut(s)	95, 178, 205, 218, 304, 355, 402, 438
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	3 cut(s)	234, 318, 396
DpnI	GATC	3 cut(s)	5, 152, 213
DpnII	GATC	3 cut(s)	3, 150, 211
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	404
Eco47I	GGWCC	1 cut(s)	308
Eco53kI	GAGCTC	1 cut(s)	402
EcoICRI	GAGCTC	1 cut(s)	402
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	3 cut(s)	84, 212, 223
FaiI	YATR	9 cut(s)	82, 92, 99, 101, 191, 210, 221, 281, 339
FatI	CATG	3 cut(s)	80, 208, 219
Fnu4HI	GCNGC	2 cut(s)	176, 203
FokI	GGATG	1 cut(s)	479
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	2 cut(s)	176, 203
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	2 cut(s)	176, 203
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	2 cut(s)	215, 271
HgaI	GACGC	1 cut(s)	483
Hin1II	CATG	3 cut(s)	84, 212, 223
HinfI	GANTC	5 cut(s)	28, 236, 392, 422, 428
HpaII	CCGG	2 cut(s)	215, 271
Hpy188I	TCNGA	6 cut(s)	261, 385, 397, 415, 427, 442
Hpy188III	TCNNGA	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	487
HpyCH4V	TGCA	2 cut(s)	90, 223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 361
HpyF3I	CTNAG	3 cut(s)	234, 318, 396
HpySE526I	ACGT	1 cut(s)	487
Hsp92II	CATG	3 cut(s)	84, 212, 223
Kzo9I	GATC	3 cut(s)	3, 150, 211
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	7 cut(s)	146, 173, 228, 284, 338, 359, 390
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	1 cut(s)	487
MaeIII	GTNAC	1 cut(s)	348
MalI	GATC	3 cut(s)	5, 152, 213
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	3 cut(s)	3, 150, 211
MboII	GAAGA	3 cut(s)	68, 123, 401
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	1 cut(s)	283
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	5 cut(s)	243, 255, 321, 379, 486
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	188
MspI	CCGG	2 cut(s)	215, 271
MspR9I	CCNGG	2 cut(s)	161, 271
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	2 cut(s)	199, 361
NciI	CCSGG	1 cut(s)	271
NcoI	CCATGG	1 cut(s)	80
NdeII	GATC	3 cut(s)	3, 150, 211
NlaIII	CATG	3 cut(s)	84, 212, 223
NlaIV	GGNNCC	1 cut(s)	206
NmeAIII	GCCGAG	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	81
PfeI	GAWTC	4 cut(s)	28, 392, 422, 428
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	177, 204
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	150
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	404
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	176, 203
Sau3AI	GATC	3 cut(s)	3, 150, 211
Sau96I	GGNCC	1 cut(s)	308
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	161, 271
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	7 cut(s)	180, 327, 348, 357, 404, 440, 490
SfaNI	GCATC	1 cut(s)	61
SinI	GGWCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	283
SsiI	CCGC	1 cut(s)	202
SspMI	CTAG	1 cut(s)	135
SstI	GAGCTC	1 cut(s)	404
StyD4I	CCNGG	2 cut(s)	159, 269
StyI	CCWWGG	1 cut(s)	80
TaiI	ACGT	1 cut(s)	490
TasI	AATT	1 cut(s)	283
TatI	WGTACW	1 cut(s)	230
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	4 cut(s)	28, 392, 422, 428
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	2 cut(s)	322, 384
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	4 cut(s)	33, 399, 462, 483
TspRI	CASTG	2 cut(s)	322, 384
VpaK11BI	GGWCC	1 cut(s)	308
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	283
XspI	CTAG	1 cut(s)	135
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.